BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G66400.1
Length=797
Score E
Sequences producing significant alignments: (Bits) Value
Ahg475742 jgi|Araly1|475742|fgenesh2_kg.2__872__AT1G66400.1 1005 0.0
> Ahg475742 jgi|Araly1|475742|fgenesh2_kg.2__872__AT1G66400.1
Length=738
Score = 1005 bits (544), Expect = 0.0
Identities = 660/714 (92%), Gaps = 16/714 (2%)
Strand=Plus/Plus
Query 38 aaaaaaTGTCGAAGAACGTTTCGAGAAACTGCTTAGGATCAATGGAAGACATCAAGAAAG 97
||| |||||| ||||||||||| |||||||||||||| ||||||||||||||||||||||
Sbjct 1 AAACAATGTCAAAGAACGTTTCAAGAAACTGCTTAGGTTCAATGGAAGACATCAAGAAAG 60
Query 98 TATTCCAACGATTCGACAAAAACAACGATGGGAAAATCTCTATCGATGAGCTTAAAGACG 157
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 TTTTCCAACGATTCGACAAAAACAACGATGGGAAAATCTCTATCGATGAGCTTAAAGACG 120
Query 158 TGATAGGAGCTCTCTCTCCAAACGCTTCACAAGAAGAAACCAAAGCAATGATGAAAGAGT 217
|||||||||||||||||||||||||| | ||||||||||||||| | |||||||||||||
Sbjct 121 TGATAGGAGCTCTCTCTCCAAACGCTACGCAAGAAGAAACCAAATCTATGATGAAAGAGT 180
Query 218 TTGATCTTGACGGTAATGGTTTCATTGATTTGGATGAGTTTGTTGCTTTGTTTCAAATCA 277
|||||||||| |||||||| ||||||||||||||||| ||||||||||||||||||| ||
Sbjct 181 TTGATCTTGATGGTAATGGATTCATTGATTTGGATGAATTTGTTGCTTTGTTTCAAAACA 240
Query 278 GTGATCAAAGTAGCAACAATAGTGCGATTAGAGATTTGAAAGAAGCTTTTGATTTGTATG 337
||||||||||| | | | || || |||||||||||||||||||||||||||||||||||
Sbjct 241 ATGATCAAAGTACCGATAGTAATGAGATTAGAGATTTGAAAGAAGCTTTTGATTTGTATG 300
Query 338 ATTTGGATCGTAATGGAAGGATCTCGGCTAATGAGTTACACTCGGTTATGAAGAATCTTG 397
||||||||||||||||||| |||||||| | |||||||||||||||||||||||||||||
Sbjct 301 ATTTGGATCGTAATGGAAGAATCTCGGCGACTGAGTTACACTCGGTTATGAAGAATCTTG 360
Query 398 GTGAGAAGTGTTCGATTCAAGATTGTCAAAGGATGATTAATAAAGTTGATTCTGATGGTG 457
|||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 361 GTGAGAAGTGTTCGGTTCAAGATTGTCAAAGGATGATTAGTAAAGTTGATTCTGATGGTG 420
Query 458 ATGGTTGTGTTGATTTTGAAGAGTTTAAGAAGATGATGATGATTAATGGTAGTGCTTGAT 517
|||||||||||||||||||||||||||||||||||||||| | ||||| | ||||||||
Sbjct 421 ATGGTTGTGTTGATTTTGAAGAGTTTAAGAAGATGATGAT--T-AATGGAAATGCTTGAT 477
Query 518 AGAA-TCGATTTAGAATTTGGAAA-AGTGATATCCATTTTTTGT-TTGTAAATATTGTgt 574
||| |||||||||||||||| || | | | |||| |||||| | |||||||||| || |
Sbjct 478 -GAAATCGATTTAGAATTTGGGAAGATTTA-ATCCTTTTTTT-TCTTGTAAATATCGTTT 534
Query 575 ttt---atgatttcgttaatctaatcttttttaggatttaggttaattaggagtttttaa 631
||| |||| || || |||||||||||||||||||||||||||||||||||||||||||
Sbjct 535 TTTTTTATGAATTGGTCAATCTAATCTTTTTTAGGATTTAGGTTAATTAGGAGTTTTTAA 594
Query 632 tttttta-ggttttaTCGATTAATCTAGAAGAATCTCTATGTTGCTTCTTTAATGGCTCT 690
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 595 TTTTTTAAGGTTTTATCGATTAATCTAGAAGAATCTCTATGTTGCTTCTTTAATGGCTCT 654
Query 691 CTGACCTAATGTTAGGGAATATTGTTGATGACCTTAAATAATCGATTAACAATA 744
|||||||||||||||||||||||||||||||| || ||||||||||| ||||
Sbjct 655 --GACCTAATGTTAGGGAATATTGTTGATGACCT-AATTAATCGATTAATAATA 705
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 29430891924
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5