BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G66420.1
Length=849
Score E
Sequences producing significant alignments: (Bits) Value
Ahg475744 jgi|Araly1|475744|fgenesh2_kg.2__874__AT1G66420.1 974 0.0
> Ahg475744 jgi|Araly1|475744|fgenesh2_kg.2__874__AT1G66420.1
Length=742
Score = 974 bits (527), Expect = 0.0
Identities = 673/744 (90%), Gaps = 7/744 (1%)
Strand=Plus/Plus
Query 109 GAGGAGTTTTGTGGCGGCTCCGGCAAGGTACAACCGTCTGAGATGAAGCGTCGGAGTGAA 168
|||||||||| |||| |||| ||||||||||| ||||||||||||||||| ||||| |||
Sbjct 1 GAGGAGTTTTCTGGCAGCTCTGGCAAGGTACAGCCGTCTGAGATGAAGCGGCGGAGAGAA 60
Query 169 GGGACCTCAACGGACATGACTTCGAAGAGAGCCAAGAAGGTTTCAGCAGAAGATGAGAAG 228
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 GGGACCTCAACGGACGTGACTTCGAAGAGAGCCAAGAAGGTTTCAGCAGAAGATGAGAAG 120
Query 229 -A-AAG-TTGGAGAATGGACAAAAAACCCATATTTTCAAAGACTGTGGAGTGAGGAAGAT 285
| ||| | |||||||| |||||||| | |||||||||||||||||||| ||||||||||
Sbjct 121 AAGAAGATGGGAGAATGTACAAAAAAACAATATTTTCAAAGACTGTGGAATGAGGAAGAT 180
Query 286 GAGATTGTTATGCTACAAGGAATTATTAAATTTGAAGATGTTACAGGGAAAAGTCCGTTT 345
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 181 GAGATTGTTATGCTACAAGGAATTATAAAATTTGAAGATGTTACAGGGAAAAGTCCGTTT 240
Query 346 GAGGATAGACACGGGTTTATAGAATTCGTCAAGAACTCCATTAGCTTCGAGGCTAGTGTG 405
|| ||||| ||||| |||||||||||||||||||| | ||||||||||||||||||||||
Sbjct 241 GACGATAGTCACGGATTTATAGAATTCGTCAAGAAATTCATTAGCTTCGAGGCTAGTGTG 300
Query 406 CAACAATACATTGGCAAGATTAGCCAATTGAAGAGGAAAT-ATACG-AGGAAAAGGAAGA 463
|| ||||||| |||||||||||| |||||||||| | | | | | | | |||||| ||||
Sbjct 301 CACCAATACACTGGCAAGATTAGGCAATTGAAGA-G-ACTAAAAGGAACGAAAAGAAAGA 358
Query 464 ACGGTTTTTCTGAAGGTCATGAACAGAAATGTTTCAAACTGGCCATGTCTATTTGGGGAA 523
|||||||||||||| |||||| || ||||||||||| || |||| ||||||||||||||
Sbjct 359 GCGGTTTTTCTGAAGCTCATGATCAAAAATGTTTCAAGCTTGCCAAGTCTATTTGGGGAA 418
Query 524 CTAAAGAAACGTCTAAGAAGACGGACTTGTGCTCTTCACCTAAAGGTAAAAAAGTTAAAG 583
||||||||||| |||||||||||||||||| |||||||||||| ||||||| ||| |||
Sbjct 419 CTAAAGAAACGGCTAAGAAGACGGACTTGTTCTCTTCACCTAATGGTAAAATGGTTGAAG 478
Query 584 AAGAAGATGGAGATGTGACAAACTCTGATTGGTTTGAGAATTCGTTTCTACTTCCATCAA 643
| || |||| ||||||||| ||||||||||||||||||||||||||||||||||| | ||
Sbjct 479 AGGATGATGTAGATGTGACCAACTCTGATTGGTTTGAGAATTCGTTTCTACTTCCCTTAA 538
Query 644 TTGAGAGTCTTGGTGTGGATTCGGTTAAACGTAAATGGAATGTTGTGCCTATGGAGTTTA 703
|||||||||||||||||||||| || |||| |||||||| |||||||||||||||| ||
Sbjct 539 TTGAGAGTCTTGGTGTGGATTCCGTGAAACATAAATGGAGTGTTGTGCCTATGGAGGCTA 598
Query 704 AGAAGAAAATTGAAGAGAGGTTGGAGTTGTTGGAGGCTGATGAAAGTGAATGCAAGAAAA 763
|||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||
Sbjct 599 AGAAGAAAATTGAAGAGAGGTTGGAGTTGTTGGAGGCTGATGAAGGTGAATGTAAGAAAA 658
Query 764 TGGAAGAGATGTTGAAGGTTAAAAATAGCGAATGCGTGAAACAAAAGACTAACCTTTTGA 823
| |||||| ||||||| ||||||| | |||||| ||| |||||||||| || ||||||
Sbjct 659 TTAAAGAGACGTTGAAGATTAAAAAGCGTGAATGCTTGATACAAAAGACTGACTTTTTGA 718
Query 824 ATGAGGTGATCGATGTGATGACTT 847
||||||||||||||||||||||||
Sbjct 719 ATGAGGTGATCGATGTGATGACTT 742
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 31413283608
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5