BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G66430.1
Length=1520
Score E
Sequences producing significant alignments: (Bits) Value
Ahg475745 jgi|Araly1|475745|fgenesh2_kg.2__875__AT1G66430.1 1921 0.0
> Ahg475745 jgi|Araly1|475745|fgenesh2_kg.2__875__AT1G66430.1
Length=1423
Score = 1921 bits (1040), Expect = 0.0
Identities = 1297/1414 (92%), Gaps = 45/1414 (3%)
Strand=Plus/Plus
Query 62 aaaacaaaaaGTAGCTTCTCCAAGACGCGGTTCCCAATATCTGCGTTTCCCGTTTGCGTT 121
||||| |||| |||| ||||||| ||||| ||| | || ||||||||||||||||| ||
Sbjct 42 AAAACCAAAACTAGCGTCTCCAAAACGCGTTTCTCTATCCCTGCGTTTCCCGTTTGCTTT 101
Query 122 TTCCGGCAATGGCTCTCCAAGCCACTACTACTACGTTCTGCTTCTCCGGTCCAACTTTCC 181
||||||| ||||||||||||| | | ||||| ||||||||||||||||||||||||||||
Sbjct 102 TTCCGGCGATGGCTCTCCAAG-C-C-ACTACGACGTTCTGCTTCTCCGGTCCAACTTTCC 158
Query 182 GATCAACTCCTCACTCACTCACTTCAAAACGTCC-TATCTCCATCAAAGCTA------CT 234
||||||||||||||||||||||||||||||| || ||||||||||||||||| ||
Sbjct 159 GATCAACTCCTCACTCACTCACTTCAAAACG-CCGTATCTCCATCAAAGCTACTTCTTCT 217
Query 235 ACTTCTTC-TC--CTTCAAGACTCTCCAATTCACGATCTAATCTCAAAGGAAGAGCATTG 291
||||||| || ||||||||||||| || ||| ||||||||||||||||||||||||||
Sbjct 218 TCTTCTTCTTCTTCTTCAAGACTCTCAAACTCAAGATCTAATCTCAAAGGAAGAGCATTG 277
Query 292 TCTAGTGATGG-T--TCAACACAAGAATCTCCTTATGTAGTCTGTTTTGGAGAAATGCTA 348
||||||||||| | ||||||||||| ||||||||||| |||||||||||||||||| ||
Sbjct 278 TCTAGTGATGGTTCATCAACACAAGAGTCTCCTTATGTGGTCTGTTTTGGAGAAATGTTA 337
Query 349 ATCGATTTTGTACCGACGACAAGCGGACTTTCATTAGCCGATGCACCGGCTTTTAAAAAA 408
||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||
Sbjct 338 ATCGATTTTGTACCGACAACTAGCGGACTTTCATTAGCCGATGCACCGGCTTTTAAAAAA 397
Query 409 GCTCCAGGTGGTGCACCTGCTAATGTAGCTGTTGGTATTGCTCGTCTTGGTGGTTCTTCA 468
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 398 GCTCCAGGTGGTGCACCTGCTAATGTAGCTGTTGGTATTGCTCGTCTTGGTGGTTCTTCA 457
Query 469 GCTTTCATTGGAAAGGTTGGTGAAGATGAGTTTGGTTATATGCTTGCGAATATTTTGAAA 528
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 458 GCTTTCATTGGGAAGGTTGGTGAAGATGAGTTTGGTTATATGCTTGCGAATATTTTGAAA 517
Query 529 GATAATAATGTGAACAATGATGGTATGAGGTTTGATCCAGGAGCAAGAACTGCTTTAGCT 588
||||||||||| ||||| || ||||||||||||||||| ||||| |||||||||||||||
Sbjct 518 GATAATAATGTAAACAACGAAGGTATGAGGTTTGATCCTGGAGCTAGAACTGCTTTAGCT 577
Query 589 TTTGTGACTTTGACTAATGAAGGTGAAAGAGAGTTTATGTTTTACCGAAACCCGAGTGCT 648
|||||||||||||||| |||||||||||| |||||||||||||| |||||||||||||||
Sbjct 578 TTTGTGACTTTGACTAGTGAAGGTGAAAGGGAGTTTATGTTTTATCGAAACCCGAGTGCT 637
Query 649 GATATGTTGTTAGAGGAGTCTGAGCTTGATTTTGATTTGATCAAAAAGGCAAAGATATTT 708
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 638 GATATGTTGTTAGAGGAGTCTGAGCTTGATTTTGATTTGATCAAAAAGGCGAAGATATTC 697
Query 709 CATTACGGTTCGATAAGTCTTATCACCGAACCGTGCAAGTCTGCGCATATTTCTGCAGCT 768
||||| |||||||||||||||||||| ||||||||||||||||| ||||| |||||||
Sbjct 698 CATTATGGTTCGATAAGTCTTATCACAGAACCGTGCAAGTCTGCTCATATAGCTGCAGCA 757
Query 769 AAGGCGGCTAAGGAGGCTGGTGTTATACTCTCTTATGACCCTAACCTTAGGCTTCCGTTG 828
||||| |||||||||||||||||||| || || |||||||| ||||||||||| || |||
Sbjct 758 AAGGCTGCTAAGGAGGCTGGTGTTATTCTTTCCTATGACCCAAACCTTAGGCTCCCATTG 817
Query 829 TGGCCTTCTGCAGACAATGCTAGGGAAGAGATTCTGAGCATTTGGGAGACTGCTGATATT 888
||||||||| ||||||| ||||||||||||||||| |||||||||||||||||||||||
Sbjct 818 TGGCCTTCTCCAGACAACGCTAGGGAAGAGATTCTAAGCATTTGGGAGACTGCTGATATC 877
Query 889 ATAAAGATAAGTGAAGAGGAGATTGTCTTTCTAACGAAAGGAGAAGATCCGTATGATGAT 948
||||||||||| ||||||||||| |||||| |||||||||||||||||||||||||||||
Sbjct 878 ATAAAGATAAGCGAAGAGGAGATCGTCTTTTTAACGAAAGGAGAAGATCCGTATGATGAT 937
Query 949 AATGTTGTACGCAAGTTGTTTCATCCTAAGCTGAAACTTCTCCTTGTCACTGAAGGTCCT 1008
|||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 938 AATGTTGTCCGCAAGTTGTTTCATCCTAAGCTGAAACTTCTTCTTGTCACTGAAGGTCCT 997
Query 1009 GAAGGCTGTCGGTACTACACCAAGGATTTTAGTGGGAGAGTGCATGGATTGAAGGTGGAT 1068
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 998 GAAGGCTGTCGGTACTACACCAAGGATTTTAGCGGGAGAGTGCATGGATTGAAGGTGGAT 1057
Query 1069 GTAGTGGACACAACAGGTGCTGGTGATGCATTTGTTGCGGGGATACTATCGCAACTAGCC 1128
||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||
Sbjct 1058 GTAGTGGACACAACAGGTGCTGGTGATGCATTTGTTGCGGGAATACTTTCGCAACTAGCC 1117
Query 1129 AATGATCTCTCCTTGCTTCAGGACGAAGAGCGACTGAGAGAGGCTCTTATGTTTGCGAAT 1188
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1118 AATGATCTTTCCTTGCTTCAGGACGAAGAGCGACTGAGAGAGGCTCTTATGTTTGCGAAT 1177
Query 1189 GCATGCGGGGCATTAACCGTTAAAGTGAGAGGCGCAATCCCGGCCCTTCCAACCAAAGAA 1248
|| |||||||| ||||| |||||||||||||||||||| ||||||||||| |||||||||
Sbjct 1178 GCTTGCGGGGCCTTAACTGTTAAAGTGAGAGGCGCAATTCCGGCCCTTCCCACCAAAGAA 1237
Query 1249 GCTGTACATGAGGCTCTACTCAAAGCCGTCGTTTAACATTCAATAACATCACCAATATGA 1308
|||||||||||||||||||||||||| ||||||||||||||||||||||||| |
Sbjct 1238 GCTGTACATGAGGCTCTACTCAAAGCGGTCGTTTAACATTCAATAACATCAC---T---- 1290
Query 1309 GAAACAGTTTGTACGCCAGCAGATTTCGCAAGTCTGCATTTTGTTGTTGTAAAATTGTTG 1368
| | ||| |||||||||||| |||||||||||||||||||||||| |
Sbjct 1291 ----C--T--GTAAGCCAGCAGATTTTGCAAGTCTGCATTTTGTTGTTGTA---T----- 1334
Query 1369 TATAATGTACTTACCAATGTTTGTATTCTAGTAGCTGTAGAGCTTTAAGCCTTTGAATAT 1428
| | |||||| ||| ||||||||||||||||||||||||| || | ||||||||| ||
Sbjct 1335 -A-A-TGTACTCGCCATTGTTTGTATTCTAGTAGCTGTAGAGATT-A-GCCTTTGAAAAT 1389
Query 1429 ATTGTTGAGCCAAGAACTAGAATCCATCTTTTGA 1462
|||||||||||||||||| |||||||||||||||
Sbjct 1390 ATTGTTGAGCCAAGAACTTGAATCCATCTTTTGA 1423
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 56906826030
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5