BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G66460.1 Length=1563 Score E Sequences producing significant alignments: (Bits) Value Ahg475746 jgi|Araly1|475746|fgenesh2_kg.2__876__AT1G66460.1 2255 0.0 > Ahg475746 jgi|Araly1|475746|fgenesh2_kg.2__876__AT1G66460.1 Length=1545 Score = 2255 bits (1221), Expect = 0.0 Identities = 1446/1553 (93%), Gaps = 21/1553 (1%) Strand=Plus/Plus Query 1 ATGATTCTTGATTTGGGTTTTCCTTGTTTTGTTCCTCCTCGAACCAGCT-CTCGTGAGGA 59 ||||||||||||||||||||| |||||| ||| |||||||||||||| || ||||||| Sbjct 1 ATGATTCTTGATTTGGGTTTTGGTTGTTTCCTTCTTCCTCGAACCAGCTCCT-GTGAGGA 59 Query 60 CAACAAAGCTTGGCTTCTGGCTGAAACAGAGCCGAAGCTTATTGACTCAGAACAACATTC 119 |||||||||||||||||||| || |||||||||||| |||| |||||||||| |||||| Sbjct 60 CAACAAAGCTTGGCTTCTGGAGGAGACAGAGCCGAAGTTTATAGACTCAGAACCACATTC 119 Query 120 GTTGCAGTCTTCGTTTAGGTTTAGTCTTTGCTCAC-AGTTGGAGCTGGAGAAGATTAAAA 178 |||||||||||| ||||||||||||||||| || | || |||||||||||||||| |||| Sbjct 120 GTTGCAGTCTTCATTTAGGTTTAGTCTTTGTTCGCAAG-TGGAGCTGGAGAAGATGAAAA 178 Query 179 AGGAGAAACCTTCGTTGTCTTATCGGAATTTTCCAGTGTCTGAAGGATCAGAGACGGTTC 238 ||||| ||||||||| |||||||||||||||||| ||||||||||||||||||||||||| Sbjct 179 AGGAGCAACCTTCGTCGTCTTATCGGAATTTTCCGGTGTCTGAAGGATCAGAGACGGTTC 238 Query 239 TGCTAGTGAATCTGGAGAATGAGACAGGAGAATTGACAG-GTGAGATGAATTGGTCGAGA 297 ||||||||||||||||||||||||||||||||||||| | ||||||||||| |||||| Sbjct 239 TGCTAGTGAATCTGGAGAATGAGACAGGAGAATTGAC-GAATGAGATGAATTTTTCGAGA 297 Query 298 GGCCTTTCACTGGAGAAGAGTATTTCTCCGGTGGCCGATTCTTTGATCCGATTCAGTTAC 357 || |||||||||||||||||||||||||| ||||| || ||||| |||||||||||||| Sbjct 298 GGTCTTTCACTGGAGAAGAGTATTTCTCCTGTGGCTAATACTTTGGTCCGATTCAGTTAC 357 Query 358 CGCGAACTCCTCACTGCCACGCGCAATTTCTCAAAACGGAGGGTTTTGGGAAGAGGAGCT 417 ||||||||||| |||| |||| ||||||||||||||| || || ||||||||||||||| Sbjct 358 AGCGAACTCCTCGCTGCTACGCACAATTTCTCAAAACGTAGAGTGTTGGGAAGAGGAGCT 417 Query 418 TGTAGCTATGTTTTTAAGGGAAGAATCGGG-ATTTGGCGTAAAGCCGTGGCCATCAAAAG 476 ||||||||||| |||||||||||||| ||| |||||||||||||| || ||||||||||| Sbjct 418 TGTAGCTATGTGTTTAAGGGAAGAAT-GGGCATTTGGCGTAAAGCAGTAGCCATCAAAAG 476 Query 477 ACTTGATAAAAAAGATAAAGAATCTCCAAAGTCGTTTTGCAGAGAGTTGATGATTGCAAG 536 |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 477 ACTTGATAAAAAGGATAAAGAATCTCCAAAGTCGTTTTGCAGAGAGTTGATGATTGCAAG 536 Query 537 CTCTCTT-AATAGCCCCAACGTTGTGCCTCTGCTAGGTTTCTGTATCGATCCCGATCAAG 595 ||||||| ||| |||| |||||||| ||||| ||||| |||||||| ||||||||||||| Sbjct 537 CTCTCTTAAAT-GCCCTAACGTTGTACCTCTACTAGGGTTCTGTATTGATCCCGATCAAG 595 Query 596 GGCTTTTCTTGGTGTACAAGTATGTGTCTGGTGGCAGCCTCGAACGCTTTTTACATGAT- 654 ||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||| Sbjct 596 GGCTTTTCTTGGTGTACAAGTATGTCTCTGGTGGCAGCCTTGAACGCTTTTTACATGATA 655 Query 655 --AAGAAGAAAAAGAAGAGTAGGAAGACCCCCTTGAATCTGCCTTGGTCTACAAGGTACA 712 |||||||| |||||| | ||||| |||||||||||||||||||||||||||||||||| Sbjct 656 ACAAGAAGAAGAAGAAGGGAAGGAAAACCCCCTTGAATCTGCCTTGGTCTACAAGGTACA 715 Query 713 AGGTTGCCTTAGGTATTGCAGATGCCATAGCCTATTTACATAATGGCACTGAGCAATGCG 772 ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| | Sbjct 716 AGGTTGCCTTAGGTATTGCAGATGCCATAGCCTATTTACATAATGGCACAGAGCAATGTG 775 Query 773 TTGTGCATAGAGACATTAAACCCTCAAATATTCTTCTTTCCTCAAACAAAATTCCAAAGT 832 |||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||| Sbjct 776 TTGTGCATAGAGACATCAAACCCTCAAATATTCTTCTTTCCTCAAACAAAATTCCGAAGT 835 Query 833 TGTGTGATTTTGGGTTGGCTACTTGGACCGCTGCGCCTTCGGTTCCTTTCCTCTGTAAAA 892 ||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||| Sbjct 836 TGTGTGATTTTGGGTTGGCGACTTGGACCGCTGCACCTTCGGTTCCTTTCCTCTGTAAAA 895 Query 893 CCGTGAAAGGAACTTTTGGTTATCTGGCTCCTGAGTATTTCCAACACGGCAAGATATCTG 952 |||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||| Sbjct 896 CCGTGAAAGGAACTTTCGGTTATCTAGCTCCTGAGTATTTCCAACACGGCAAGATATCTG 955 Query 953 ACAAGACCGATGTTTACGCATTTGGAGTCGTGTTGCTTGAGCTAATAACTGGTCGGAAGC 1012 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 956 ACAAGACCGATGTTTACGCATTTGGAGTCGTGTTGCTTGAGCTAATAACTGGTCGGAAGC 1015 Query 1013 CAATTGAAGCAAGAAGACCATCTGGTGAAGAAAATTTGGTAGTTTGGGCAAAACCGTTGT 1072 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1016 CAATTGAAGCAAGAAGACCATCTGGTGAAGAAAATTTGGTAGTTTGGGCAAAACCGTTGT 1075 Query 1073 TGCATAGAGGGATAGAAGCTACAGAGGAGTTGCTAGAT-CCAAGGCTGAAATGTACTAGA 1131 | ||||||||||| ||||||| |||||||||||| ||| ||| ||||||||| ||| ||| Sbjct 1076 TACATAGAGGGATTGAAGCTATAGAGGAGTTGCTTGATTCCA-GGCTGAAATATACAAGA 1134 Query 1132 AAAAACTCGGCTTCGATGGAGCGTATGATCCGAGCTGCGGCAGCGTGTGTGATCAATGAG 1191 || || |||| ||||||||||||||||||||||||||| || || |||||||||| |||| Sbjct 1135 AAGAATTCGGTTTCGATGGAGCGTATGATCCGAGCTGCAGCGGCCTGTGTGATCAGTGAG 1194 Query 1192 GAATCACGAAGACCGGGGATGAAGGAGATACTTTCAATCCTAAAAGGCGGTGAAGGGATA 1251 || || |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1195 GAGTCGCGAAGACCGGGGATGAAGGAGATACTTTCAATCCTAAAAGGCGGTGAAGGGATA 1254 Query 1252 GAACTAAGGACGTTATCAAGCCGGAAGAAATCAAATCTTCCGGGTATAATGGACTGTTAT 1311 ||||||||| |||| |||||||||||||||||||||||||||||||| ||||| |||||| Sbjct 1255 GAACTAAGGGCGTTTTCAAGCCGGAAGAAATCAAATCTTCCGGGTATGATGGATTGTTAT 1314 Query 1312 CCGCAGTTGCAACGGACAAAATCTGAGATGAAGAGTCATCTTACGCTTGCGATGCTCGGA 1371 || |||||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1315 CCCCAGTTGCAGCGGACAAAATCTGAGATGAAGAGTCATCTTACGCTTGCGATGCTCGGA 1374 Query 1372 GTAACGGAATTTGAAGCTGATGATCTTTTGTAGGGAAGGTAACAGA-CCGGAGACATGGT 1430 |||||||||||||||| |||||||||||||||||||| |||||| | ||||||| ||||| Sbjct 1375 GTAACGGAATTTGAAGATGATGATCTTTTGTAGGGAATGTAACA-ATCCGGAGATATGGT 1433 Query 1431 AAGAAACAAACAATAAGAAGGTGGTAAGTA-AGTGTAGATATCAAATGTAAATGTTTACT 1489 ||||||||||||||||||||||||||||| ||||||||||||| |||||||||||| | Sbjct 1434 AAGAAACAAACAATAAGAAGGTGGTAAGTGTAGTGTAGATATCAT-TGTAAATGTTTATT 1492 Query 1490 GAGATACCCGGTTAAGATTTTAATTTCCGGTTTGGTTAATAATCATAAATAAA 1542 || |||||||||||||||||| |||||||||||| ||||||||||||||||| Sbjct 1493 GA--TACCCGGTTAAGATTTTATTTTCCGGTTTGGGTAATAATCATAAATAAA 1543 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 58544706565 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5