BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G66460.1
Length=1563
Score E
Sequences producing significant alignments: (Bits) Value
Ahg475746 jgi|Araly1|475746|fgenesh2_kg.2__876__AT1G66460.1 2255 0.0
> Ahg475746 jgi|Araly1|475746|fgenesh2_kg.2__876__AT1G66460.1
Length=1545
Score = 2255 bits (1221), Expect = 0.0
Identities = 1446/1553 (93%), Gaps = 21/1553 (1%)
Strand=Plus/Plus
Query 1 ATGATTCTTGATTTGGGTTTTCCTTGTTTTGTTCCTCCTCGAACCAGCT-CTCGTGAGGA 59
||||||||||||||||||||| |||||| ||| |||||||||||||| || |||||||
Sbjct 1 ATGATTCTTGATTTGGGTTTTGGTTGTTTCCTTCTTCCTCGAACCAGCTCCT-GTGAGGA 59
Query 60 CAACAAAGCTTGGCTTCTGGCTGAAACAGAGCCGAAGCTTATTGACTCAGAACAACATTC 119
|||||||||||||||||||| || |||||||||||| |||| |||||||||| ||||||
Sbjct 60 CAACAAAGCTTGGCTTCTGGAGGAGACAGAGCCGAAGTTTATAGACTCAGAACCACATTC 119
Query 120 GTTGCAGTCTTCGTTTAGGTTTAGTCTTTGCTCAC-AGTTGGAGCTGGAGAAGATTAAAA 178
|||||||||||| ||||||||||||||||| || | || |||||||||||||||| ||||
Sbjct 120 GTTGCAGTCTTCATTTAGGTTTAGTCTTTGTTCGCAAG-TGGAGCTGGAGAAGATGAAAA 178
Query 179 AGGAGAAACCTTCGTTGTCTTATCGGAATTTTCCAGTGTCTGAAGGATCAGAGACGGTTC 238
||||| ||||||||| |||||||||||||||||| |||||||||||||||||||||||||
Sbjct 179 AGGAGCAACCTTCGTCGTCTTATCGGAATTTTCCGGTGTCTGAAGGATCAGAGACGGTTC 238
Query 239 TGCTAGTGAATCTGGAGAATGAGACAGGAGAATTGACAG-GTGAGATGAATTGGTCGAGA 297
||||||||||||||||||||||||||||||||||||| | ||||||||||| ||||||
Sbjct 239 TGCTAGTGAATCTGGAGAATGAGACAGGAGAATTGAC-GAATGAGATGAATTTTTCGAGA 297
Query 298 GGCCTTTCACTGGAGAAGAGTATTTCTCCGGTGGCCGATTCTTTGATCCGATTCAGTTAC 357
|| |||||||||||||||||||||||||| ||||| || ||||| ||||||||||||||
Sbjct 298 GGTCTTTCACTGGAGAAGAGTATTTCTCCTGTGGCTAATACTTTGGTCCGATTCAGTTAC 357
Query 358 CGCGAACTCCTCACTGCCACGCGCAATTTCTCAAAACGGAGGGTTTTGGGAAGAGGAGCT 417
||||||||||| |||| |||| ||||||||||||||| || || |||||||||||||||
Sbjct 358 AGCGAACTCCTCGCTGCTACGCACAATTTCTCAAAACGTAGAGTGTTGGGAAGAGGAGCT 417
Query 418 TGTAGCTATGTTTTTAAGGGAAGAATCGGG-ATTTGGCGTAAAGCCGTGGCCATCAAAAG 476
||||||||||| |||||||||||||| ||| |||||||||||||| || |||||||||||
Sbjct 418 TGTAGCTATGTGTTTAAGGGAAGAAT-GGGCATTTGGCGTAAAGCAGTAGCCATCAAAAG 476
Query 477 ACTTGATAAAAAAGATAAAGAATCTCCAAAGTCGTTTTGCAGAGAGTTGATGATTGCAAG 536
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 477 ACTTGATAAAAAGGATAAAGAATCTCCAAAGTCGTTTTGCAGAGAGTTGATGATTGCAAG 536
Query 537 CTCTCTT-AATAGCCCCAACGTTGTGCCTCTGCTAGGTTTCTGTATCGATCCCGATCAAG 595
||||||| ||| |||| |||||||| ||||| ||||| |||||||| |||||||||||||
Sbjct 537 CTCTCTTAAAT-GCCCTAACGTTGTACCTCTACTAGGGTTCTGTATTGATCCCGATCAAG 595
Query 596 GGCTTTTCTTGGTGTACAAGTATGTGTCTGGTGGCAGCCTCGAACGCTTTTTACATGAT- 654
||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||
Sbjct 596 GGCTTTTCTTGGTGTACAAGTATGTCTCTGGTGGCAGCCTTGAACGCTTTTTACATGATA 655
Query 655 --AAGAAGAAAAAGAAGAGTAGGAAGACCCCCTTGAATCTGCCTTGGTCTACAAGGTACA 712
|||||||| |||||| | ||||| ||||||||||||||||||||||||||||||||||
Sbjct 656 ACAAGAAGAAGAAGAAGGGAAGGAAAACCCCCTTGAATCTGCCTTGGTCTACAAGGTACA 715
Query 713 AGGTTGCCTTAGGTATTGCAGATGCCATAGCCTATTTACATAATGGCACTGAGCAATGCG 772
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
Sbjct 716 AGGTTGCCTTAGGTATTGCAGATGCCATAGCCTATTTACATAATGGCACAGAGCAATGTG 775
Query 773 TTGTGCATAGAGACATTAAACCCTCAAATATTCTTCTTTCCTCAAACAAAATTCCAAAGT 832
|||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||
Sbjct 776 TTGTGCATAGAGACATCAAACCCTCAAATATTCTTCTTTCCTCAAACAAAATTCCGAAGT 835
Query 833 TGTGTGATTTTGGGTTGGCTACTTGGACCGCTGCGCCTTCGGTTCCTTTCCTCTGTAAAA 892
||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||
Sbjct 836 TGTGTGATTTTGGGTTGGCGACTTGGACCGCTGCACCTTCGGTTCCTTTCCTCTGTAAAA 895
Query 893 CCGTGAAAGGAACTTTTGGTTATCTGGCTCCTGAGTATTTCCAACACGGCAAGATATCTG 952
|||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||
Sbjct 896 CCGTGAAAGGAACTTTCGGTTATCTAGCTCCTGAGTATTTCCAACACGGCAAGATATCTG 955
Query 953 ACAAGACCGATGTTTACGCATTTGGAGTCGTGTTGCTTGAGCTAATAACTGGTCGGAAGC 1012
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 956 ACAAGACCGATGTTTACGCATTTGGAGTCGTGTTGCTTGAGCTAATAACTGGTCGGAAGC 1015
Query 1013 CAATTGAAGCAAGAAGACCATCTGGTGAAGAAAATTTGGTAGTTTGGGCAAAACCGTTGT 1072
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1016 CAATTGAAGCAAGAAGACCATCTGGTGAAGAAAATTTGGTAGTTTGGGCAAAACCGTTGT 1075
Query 1073 TGCATAGAGGGATAGAAGCTACAGAGGAGTTGCTAGAT-CCAAGGCTGAAATGTACTAGA 1131
| ||||||||||| ||||||| |||||||||||| ||| ||| ||||||||| ||| |||
Sbjct 1076 TACATAGAGGGATTGAAGCTATAGAGGAGTTGCTTGATTCCA-GGCTGAAATATACAAGA 1134
Query 1132 AAAAACTCGGCTTCGATGGAGCGTATGATCCGAGCTGCGGCAGCGTGTGTGATCAATGAG 1191
|| || |||| ||||||||||||||||||||||||||| || || |||||||||| ||||
Sbjct 1135 AAGAATTCGGTTTCGATGGAGCGTATGATCCGAGCTGCAGCGGCCTGTGTGATCAGTGAG 1194
Query 1192 GAATCACGAAGACCGGGGATGAAGGAGATACTTTCAATCCTAAAAGGCGGTGAAGGGATA 1251
|| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1195 GAGTCGCGAAGACCGGGGATGAAGGAGATACTTTCAATCCTAAAAGGCGGTGAAGGGATA 1254
Query 1252 GAACTAAGGACGTTATCAAGCCGGAAGAAATCAAATCTTCCGGGTATAATGGACTGTTAT 1311
||||||||| |||| |||||||||||||||||||||||||||||||| ||||| ||||||
Sbjct 1255 GAACTAAGGGCGTTTTCAAGCCGGAAGAAATCAAATCTTCCGGGTATGATGGATTGTTAT 1314
Query 1312 CCGCAGTTGCAACGGACAAAATCTGAGATGAAGAGTCATCTTACGCTTGCGATGCTCGGA 1371
|| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1315 CCCCAGTTGCAGCGGACAAAATCTGAGATGAAGAGTCATCTTACGCTTGCGATGCTCGGA 1374
Query 1372 GTAACGGAATTTGAAGCTGATGATCTTTTGTAGGGAAGGTAACAGA-CCGGAGACATGGT 1430
|||||||||||||||| |||||||||||||||||||| |||||| | ||||||| |||||
Sbjct 1375 GTAACGGAATTTGAAGATGATGATCTTTTGTAGGGAATGTAACA-ATCCGGAGATATGGT 1433
Query 1431 AAGAAACAAACAATAAGAAGGTGGTAAGTA-AGTGTAGATATCAAATGTAAATGTTTACT 1489
||||||||||||||||||||||||||||| ||||||||||||| |||||||||||| |
Sbjct 1434 AAGAAACAAACAATAAGAAGGTGGTAAGTGTAGTGTAGATATCAT-TGTAAATGTTTATT 1492
Query 1490 GAGATACCCGGTTAAGATTTTAATTTCCGGTTTGGTTAATAATCATAAATAAA 1542
|| |||||||||||||||||| |||||||||||| |||||||||||||||||
Sbjct 1493 GA--TACCCGGTTAAGATTTTATTTTCCGGTTTGGGTAATAATCATAAATAAA 1543
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 58544706565
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5