BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G66470.1
Length=1399
Score E
Sequences producing significant alignments: (Bits) Value
Ahg925811 jgi|Araly1|925811|scaffold_201372.1 1461 0.0
Ahg493759 jgi|Araly1|493759|fgenesh2_kg.7__3192__AT5G37800.1 433 2e-120
> Ahg925811 jgi|Araly1|925811|scaffold_201372.1
Length=935
Score = 1461 bits (791), Expect = 0.0
Identities = 892/940 (95%), Gaps = 10/940 (1%)
Strand=Plus/Plus
Query 93 ATCAAACTTATTAGTGTCTAATGGCACTCGTTAATGACCATCCCAACGAGACCAATTACT 152
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 4 ATCAAACTTATTAGTGTCTAATGGCACTCGTTAATGACCATCCCAACGAGACTAATTACT 63
Query 153 TGTCAAAACAAAATTCCTCCTCTTCCGAAGATCTCTCCTCGCCGGGACTGGATCAGCCAG 212
||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||
Sbjct 64 TGTCAAAACAAAATTCCTCCTCTTCCGAAGATCTCTCTTCGCCGGGATTGGATCAGCCAG 123
Query 213 ATGCAGCTTATGCCGGTggaggaggaggaggaggCTCGGCTTCGAGCAGTAGCACGATGA 272
||||||||||||||||| |||||||||||||||||||||||||||||||| ||||
Sbjct 124 ATGCAGCTTATGCCGGT------GGAGGAGGAGGCTCGGCTTCGAGCAGTAGCACTATGA 177
Query 273 ATTCAGATCATCAACAACATCAGGGGTTTGTATTTTACCCATCCGGTGAAGATCATCACA 332
|||||||||||||||||||||| |||||||| ||||| |||||||||||||||| ||| |
Sbjct 178 ATTCAGATCATCAACAACATCAAGGGTTTGTGTTTTATCCATCCGGTGAAGATCCTCAAA 237
Query 333 ACTCTTTGATGGATTTCAACGGATCATCATTTCTTAACTTTGATCATCACGAGAGCTTTC 392
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 238 ACTCTTTGATGGATTTCAACGGATCATCATTTCTTAACTTCGATCATCACGAGAGCTTTC 297
Query 393 CTCCTCCAGCCATAAGCTGTGGTGGTAGTAGCGGTGGGGGCGGCTTCTCCTTCTTGGAGG 452
||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||
Sbjct 298 CTCCTCCAGCCATAAGCTGTGGTGGTAATAGCGGTGCCGGCGGCTTCTCCTTCTTGGAGG 357
Query 453 GCAACAACATGAGCTACGGCTTCACAAACTGGAATCATCAACATCATATGGATATTATTA 512
|||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 358 GCAATAACATGAGCTACGGCTTCACAAATTGGAATCATCAACATCATATGGATATTATTA 417
Query 513 GCCCTAGATCCACCGAAACTCCCCAAGGCCAGAAAGACTGGTTATATTCTGATTCAACTG 572
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 418 GCCCTAGATCCACCGAAACTCCCCAAGGCCAGAAAGATTGGTTATATTCTGATTCAACTG 477
Query 573 TTGTAACCACTGGTTCTAGAAACGAGTCTCTTTCGCCTAAATCCGCTGGAAACAAACGTT 632
|||||||||||||||||||| |||||||| | ||||||||||| ||||||||||||||||
Sbjct 478 TTGTAACCACTGGTTCTAGACACGAGTCTATGTCGCCTAAATCAGCTGGAAACAAACGTT 537
Query 633 CTCACACGGGAGAGAGCACTCAACCGTCGAAGAAACTGAGTAGCGGTGTGACCGGAAAGA 692
|||| |||||||||||||||||||| || ||||||| || ||| || ||||| ||||||
Sbjct 538 CTCAGACGGGAGAGAGCACTCAACCATCCAAGAAACCGAATAGTGGCGTGACTGGAAAGG 597
Query 693 CCAAGCCTAAGCCAACAACTTCACCTAAAGATCCACAAAGCCTAGCAGCCAAGAATCGAA 752
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 598 CCAAGCCTAAGCCAACAACTTCACCTAAAGATCCACAAAGCCTAGCAGCCAAGAATCGAA 657
Query 753 GAGAAAGGATAAGTGAACGTCTCAAGATATTGCAAGAACTTGTTCCCAATGGCACCAAGG 812
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 658 GAGAAAGGATAAGTGAACGTCTCAAGATATTGCAAGAACTTGTTCCCAATGGTACCAAGG 717
Query 813 TTGATTTGGTGACAATGCTTGAAAAGGCTATTAGTTATGTCAAGTTCCTTCAAGTACAAG 872
|||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||
Sbjct 718 TTGATTTGGTGACAATGCTTGAGAAGGCTATTAGTTATGTCAAGTTTCTTCAAGTACAAG 777
Query 873 TTAAGGTA-TTAGCGACCGATGAGTTTTGGCCGGCTCAAGGAGGAAAAGCTCCTGACATT 931
|||||||| || || |||||||||||||||||||| ||||||||||||||||| ||||||
Sbjct 778 TTAAGGTACTT-GCAACCGATGAGTTTTGGCCGGCCCAAGGAGGAAAAGCTCCAGACATT 836
Query 932 TCTCAAGTTAAAGACGCCATTGATGCCATTCTCTCCTCATCACAACGAGACAGGAATTCG 991
|||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||
Sbjct 837 TCTCAAGTTAAAGACGCCATTGATGCTATCCTCTCCTCATCACAACGAGACAGGAATTCG 896
Query 992 AATCTGATCACCAATTAATGAAGGGTTTTATCA-TTAATA 1030
|||||||||||||||||||||||||||| || | ||||||
Sbjct 897 AATCTGATCACCAATTAATGAAGGGTTT-ATTAATTAATA 935
> Ahg493759 jgi|Araly1|493759|fgenesh2_kg.7__3192__AT5G37800.1
Length=903
Score = 433 bits (234), Expect = 2e-120
Identities = 375/442 (85%), Gaps = 14/442 (3%)
Strand=Plus/Plus
Query 547 AGACTGGTTATATTCTGATTCAACTGTTGTAACCACTGGTTCT-AGAAACGAGTCT-CTT 604
||||||||||||||| |||||||| |||||| ||| |||| | || |||||||| |
Sbjct 453 AGACTGGTTATATTCAGATTCAACCATTGTAAACACCGGTT-TAAGGCACGAGTCTGC-G 510
Query 605 TCGCCTAAATC-CGCTGGAAACAAACGTTCTCACACGGGAGAGAGCACTCAACC-GTCGA 662
|| |||||| | |||||||| |||||| || ||||||||| | ||||| ||| ||||
Sbjct 511 TCCCCTAAA-CTGGCTGGAAATAAACGTCCTTTCACGGGAGATAACACTC-ACCTTTCGA 568
Query 663 AGAAACTGAGTAGCGGTGTGACCGGAAAGACCAAGCCTAAGCCAACAACTTCACCTAAAG 722
|||| | ||||| ||| | ||| || |||| |||||| ||||||||||||||||||
Sbjct 569 AGAAGCCAAGTAGTGGTACCAATGGAGAGGCCAAACCTAAGGCAACAACTTCACCTAAAG 628
Query 723 ATCCACAAAGCCTAGCAGCCAAGAATCGAAGAGAAAGGATAAGTGAACGTCTCAA-GATA 781
||||||||||||||||||| ||||| ||||||||||||||||| || || ||||| | ||
Sbjct 629 ATCCACAAAGCCTAGCAGCTAAGAACCGAAGAGAAAGGATAAGCGAGCGCCTCAAAG-TA 687
Query 782 TTGCAAGAACTTGTTCCCAATGGCACCAAGGTTGATTTGGTGACAATGCTTGA-AAAGGC 840
|||||||||||||| ||||||||||||||||| ||||||||||| |||||||| |||| |
Sbjct 688 TTGCAAGAACTTGTACCCAATGGCACCAAGGTGGATTTGGTGACTATGCTTGAGAAAG-C 746
Query 841 TATTAGTTATGTCAAGTTCCTTCAAGTACAAGTTAAGGTA-TTAGCGACCGATGAGTTTT 899
||| | ||||||||||| ||||||||||||||||||||| || ||| ||||||||||||
Sbjct 747 AATTGGCTATGTCAAGTTTCTTCAAGTACAAGTTAAGGTACTT-GCGGCCGATGAGTTTT 805
Query 900 GGCCGGCTCAAGGAGGAAAAGCTCCTGACATTTCTCAAGTTAAAGACGCCATTGATGCCA 959
||||||| ||||||||||||||||| |||||||||||||||||||| |||||||| || |
Sbjct 806 GGCCGGCGCAAGGAGGAAAAGCTCCGGACATTTCTCAAGTTAAAGAAGCCATTGACGCAA 865
Query 960 TTCTCTCCTCATCACAACGAGA 981
| ||||| ||| | ||| ||||
Sbjct 866 TCCTCTCATCAACGCAAAGAGA 887
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 52297906385
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5