BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G66480.1
Length=965
Score E
Sequences producing significant alignments: (Bits) Value
Ahg475748 jgi|Araly1|475748|fgenesh2_kg.2__878__AT1G66480.1 1369 0.0
> Ahg475748 jgi|Araly1|475748|fgenesh2_kg.2__878__AT1G66480.1
Length=967
Score = 1369 bits (741), Expect = 0.0
Identities = 900/975 (92%), Gaps = 18/975 (2%)
Strand=Plus/Plus
Query 1 CAGCTTCACACACACTAAAATTCaaaaaaaTAACATTTTCAACCAAACCTCCTCAACATA 60
||||||||||||| ||||||||||||||||||| | ||||||||||||||||||||||||
Sbjct 1 CAGCTTCACACACTCTAAAATTCAAAAAAATAATA-TTTCAACCAAACCTCCTCAACATA 59
Query 61 TATAAATAGTAACATAGCCACTTTATAACACATTTTCACATTATCAAATCAAATAAACaa 120
||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||
Sbjct 60 TATAAATAGTAACATAGCCACTTTATAACACATTTTCACATTATCCAATCAAAAAAACAA 119
Query 121 aaaaaaaaaaaaagcaaagcgaagaaaaaa-a-aaTGGGAAACAGCATTACTGTGAAGAG 178
|||||||||||| |||||| ||| ||| | | |||||||||||||||||||||||||||
Sbjct 120 AAAAAAAAAAAA--CAAAGCAAAGCAAAGAGACAATGGGAAACAGCATTACTGTGAAGAG 177
Query 179 AAAAAGAGCTAAAGTAATGAAGATCGACGGCGAAACTTTCCGAATTAAAACTCCGGTGAC 238
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 178 AAAGAGAGCTAAAGTAATGAAGATCGACGGCGAAACTTTCCGAATTAAAACTCCGGTGAC 237
Query 239 GGCGAGAGAAGTCACCGCGGATTATCCCGGTTACGTTTTGTTAGATTCTCAAGCCGTTAA 298
|||||| |||||||| |||||||||||||||||||||||| |||||||||||||||||||
Sbjct 238 GGCGAGGGAAGTCACGGCGGATTATCCCGGTTACGTTTTGCTAGATTCTCAAGCCGTTAA 297
Query 299 ACACTTTGGAGTTCGCTCTAAGCCGCTTGAACCGAACCAAACCTTGAAGCCGAA-AAAGA 357
||||||||||||||||||||| ||||||||||||| ||||| |||||||||||| ||| |
Sbjct 298 ACACTTTGGAGTTCGCTCTAAACCGCTTGAACCGAGCCAAATCTTGAAGCCGAAGAAA-A 356
Query 358 CTTATTTTCTCGTCGAGCTTCCTAAGCTTCCACCGGAGACGACGGCGGTG-GATACAGAA 416
||||||||||||||||||||||||||||||| ||||||||||||||| | ||||| ||
Sbjct 357 CTTATTTTCTCGTCGAGCTTCCTAAGCTTCCGCCGGAGACGACGGCG-TCAGATACGGAC 415
Query 417 AATAAGCTACCGTACCGGAGAGTGATGTCTGGTATCCACGTTGGCGCAAAGGAGCGGTTA 476
|||||||| |||||||||||||| |||||||| |||||||||||||| ||||||||||||
Sbjct 416 AATAAGCTTCCGTACCGGAGAGTTATGTCTGGAATCCACGTTGGCGCGAAGGAGCGGTTA 475
Query 477 GATATGTTGATGTTGTCTCGGAGAACGGTTTCTGACGTCACAATCGGAAGATCTGACGGT 536
|| ||||||||| ||||||||||||||||||||||||| || ||||| |||||||||||
Sbjct 476 GAAATGTTGATGCTGTCTCGGAGAACGGTTTCTGACGTTACGATCGGGAGATCTGACGGC 535
Query 537 GGAGATGGGTTTGGGCCTGAGCTTGGGCCTGGACATACGAGTGTGAGGTTGAGGTTGCCT 596
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 536 GGAGATGGGTTTGGGCCTGGGCTTGGGCCTGGACATACGAGTGTGAGGTTGAGGTTGCCT 595
Query 597 CGTTCTCAGATCACGAAGCTTATGGAAGAGAATAATAATGATGCTTCGGCCATAGCTGAG 656
||||||||||| ||||||||||||||||||||||||||||||||||| || |||||||||
Sbjct 596 CGTTCTCAGATTACGAAGCTTATGGAAGAGAATAATAATGATGCTTCAGCGATAGCTGAG 655
Query 657 AAGATTTTAGGTATCTATATGGAGAGGTCTGGCGAGCTTGGCGGCGGTAGAGGTGGTGTT 716
||||||||||||||||| ||||||||||| || ||||||||||||||||||||||| | |
Sbjct 656 AAGATTTTAGGTATCTACATGGAGAGGTCCGGTGAGCTTGGCGGCGGTAGAGGTGGCGGT 715
Query 717 GACGGCCGCCGGGAACTTGGAAGTGGGGAGATTAAAGCGCGTGAGAAGCAGGTGAGTTTC 776
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 716 GACGGCCGCCGGAAACTTGGAAGTGGGGAGATTAAAGCGCGTGAGAAGCAGGTGAGTTTC 775
Query 777 GCCGGAGAAGGTGGACGGGAGCTTCCTGTTCTATGGAGTAGAAGTGGAAAATAATCATCA 836
|||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 776 GCCGGAGATGGTGGACGGGAGCTTCCTGTTCTATGGAGCAGAAGTGGAAAATAATCATCA 835
Query 837 AATATTCAAA-TAGACAAACTAATTCTC--tttttt-gaaccccttttattttt-t-ttC 890
| || |||| || | || || || |||||| |||||| |||| | ||| | |||
Sbjct 836 ATTAGACAAACTA-ATT--CTCCTTTTCCATTTTTTAGAACCCTTTTTCTATTTATGTTC 892
Query 891 TTATATGAAGTTATTGTGGTAGGACTCATATATTATGTGTATAAATCTCTTTTATCTAGC 950
|||||| |||||||||||||||||||| |||||||||||||||||| |||||||| ||||
Sbjct 893 TTATATAAAGTTATTGTGGTAGGACTCCTATATTATGTGTATAAATATCTTTTATATAGC 952
Query 951 AACTAGAGATTATTT 965
|| ||||||| ||||
Sbjct 953 AAGTAGAGATGATTT 967
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 35835541980
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5