BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G66490.1
Length=1083
Score E
Sequences producing significant alignments: (Bits) Value
Ahg315612 jgi|Araly1|315612|fgenesh1_pm.C_scaffold_2000645 592 2e-168
Ahg312135 jgi|Araly1|312135|fgenesh1_pm.C_scaffold_1000915 104 1e-21
> Ahg315612 jgi|Araly1|315612|fgenesh1_pm.C_scaffold_2000645
Length=966
Score = 592 bits (320), Expect = 2e-168
Identities = 618/755 (82%), Gaps = 48/755 (6%)
Strand=Plus/Plus
Query 277 TTTAAAGTCTTTCATTGCGAAGGCTTGTTGTTATGCGTCTTCAGAGGTAACCGATGGCCT 336
||| |||| |||||||| || ||||| |||||||||||| |||||| ||| | ||||
Sbjct 124 TTTCAAGTATTTCATTGGGACGGCTTATTGTTATGCGTCATCAGAGACAACAGGTGGCGG 183
Query 337 GTAGTGTGGAACCCTTATCTGGGGGGAAC-AGGGTGGATTCAACCCATAAGCGATTTCCA 395
|| ||||||||||||||| |||||| ||| | ||| |||| ||||||||| | | |||||
Sbjct 184 GTGGTGTGGAACCCTTATTTGGGGGAAACTA-GGTTGATTAAACCCATAAACAAATTCCA 242
Query 396 CAAATATC-AAGTATCAGACAAGTTTGCTTTCGGATACG------AGAACAAGAACCACT 448
|| ||| | || ||| |||| ||||||||| ||||||| | ||||||||||| |
Sbjct 243 CAGATA-CAAAATATTGGACATGTTTGCTTTAGGATACGATAACAACAACAAGAACCA-T 300
Query 449 -TTTTTGGATTTTATGATATCTACGATCTTAACTCTAGTGCATGGAAGGTTCTTGATGTC 507
|| || |||| ||| |||||| || ||||||||| |||||||| |||||||||||||
Sbjct 301 CTTCCTGTCTTTTTTGAAATCTACAATTTTAACTCTAATGCATGGAGGGTTCTTGATGTC 360
Query 508 AATCCCGATTGTGATATAAAATGTGGCGTGTCTTTGAAAGGAAAAACTTACTTTTTTGCT 567
||||| | ||||| |||||| | || || |||||||| ||||| |||||||||||||||
Sbjct 361 TATCCCCACTGTGACATAAAAAGCGGTGTATCTTTGAAGGGAAATACTTACTTTTTTGCT 420
Query 568 ------AAAG--AAA---TAG-CAAAAGCTCCAAATGTCAAAGATTTTTTAGTGTGTTTT 615
|||| ||| | | || |||||||||||| ||| ||||||| | ||||||
Sbjct 421 CGAGAAAAAGTAAAAGGTTTGTCATCAGCTCCAAATGTTGAAGTTTTTTTACTATGTTTT 480
Query 616 GATTTTACTGCTGAGAGATTTGGACCGCGCCTTCCTCTGCCGTTTCACTCTTGCGGTTT- 674
||||||||||| |||||||||||||||||||||||||||||||| ||||||| | ||||
Sbjct 481 GATTTTACTGCCGAGAGATTTGGACCGCGCCTTCCTCTGCCGTTGCACTCTTAC-GTTTG 539
Query 675 GTTTTCAGAACATGTGACTTTATCTTGTGTAAGAGATGAGCACTTAGCTGTCTTATATCG 734
| |||||||||| | |||||||||||||||||||||||||||| | |||||||||| ||
Sbjct 540 GCTTTCAGAACACGCGACTTTATCTTGTGTAAGAGATGAGCACCTCGCTGTCTTATTTCA 599
Query 735 ACGGTACAATGGAGTAATGGAGATATATATTACAACTAAGATTGAGCCGAATGAGGTATT 794
||||||||||| | ||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 600 ACGGTACAATGCAATAATGGAGATATATATTACAACTAAGATTGAGCCGAATGTGGTAT- 658
Query 795 CT-GGAGCAATTTCTTGAAAGTGGATCTCACTACTTTTCCGGACAGATTTTATGGAAGTC 853
|| ||||||||||||||||||||||||||||||||||||| ||||| ||||||| |
Sbjct 659 CTTGGAGCAATTTCTTGAAAGTGGATCTCACTACTTTTCCAGACAGGTTTTATGC---T- 714
Query 854 GATCTCACTACTTCTTCATTGACGAGGAGAAAAAAGTCGCTGTGGTTTTCAAGA-A-T-G 910
|| | |||||||||||||||||||||||||||| |||||||||| | | | |
Sbjct 715 GAG---AG--CTTCTTCATTGACGAGGAGAAAAAAGTCATTGTGGTTTTCGATTCACTCG 769
Query 911 AACCT-GAATGGACC-ATGGA-TTGTTCCTACCAAACAGCTTACATTATTGGA-AAAGGA 966
|| || |||||| | | | || || ||||| |||| ||||||| |||||| ||||
Sbjct 770 GTTCTAGA-TGGACCCA-G-ACTTCTTTCTACCGAACAACTTACATCATTGGAGAAAGT- 825
Query 967 GGATATCTCAAATCTGTGAAATTCGGAGAAACTCC 1001
|||||| |||||||||||||||| |||||||||||
Sbjct 826 GGATATTTCAAATCTGTGAAATTTGGAGAAACTCC 860
Score = 87.9 bits (47), Expect = 1e-16
Identities = 53/56 (95%), Gaps = 0/56 (0%)
Strand=Plus/Plus
Query 13 TCTGATCTTCCGGTGGCTTTGGTAGAAGAGATACTCTCTAGGGTTCCATTAACATC 68
|||||||||||| | ||||||||||| |||||||||||||||||||||||||||||
Sbjct 4 TCTGATCTTCCGTTAGCTTTGGTAGAGGAGATACTCTCTAGGGTTCCATTAACATC 59
> Ahg312135 jgi|Araly1|312135|fgenesh1_pm.C_scaffold_1000915
Length=1782
Score = 104 bits (56), Expect = 1e-21
Identities = 321/440 (73%), Gaps = 54/440 (12%)
Strand=Plus/Plus
Query 596 AAGATTTTTTAGTGTGTTTTGATTTTACTGCTGAGAGATTTGGACCGCGCCTTCCTCTGC 655
|||| |||||| | ||||||||||||||||||||||||||||||||||| |||||||| |
Sbjct 1271 AAGACTTTTTACTCTGTTTTGATTTTACTGCTGAGAGATTTGGACCGCGTCTTCCTCTTC 1330
Query 656 CGTTTCACTCTTGCGGTTT-GTTTTCAGAACATGTGACTTTATCTTGTGT-AA-GA-GAT 711
| |||||||||| ||| | ||| | ||||||| |||||||||| || || |||
Sbjct 1331 CTTTTCACTCTTA---TTTCGACG--AGA-C-TGTGACTCTATCTTGTGTTAAAGAAGAT 1383
Query 712 GAGCACTTAGCTGTCTTATATC-GAC---GGTAC-A-ATG-GAGTAATGGAGATATATAT 764
||| || | ||||||| | | | ||| | | ||| || | |||||||| | |
Sbjct 1384 CAGCTCTC--CA-TCTTATACCAGCCCTTGGTGCCATATGAGA-TCATGGAGATTTGGGT 1439
Query 765 TACAACTAAGATTGAGCCGAATGAGGTATTC-TGGAGCAA-TTTCTTGAAAGTGGATCTC 822
| | ||||| |||||||| |||| || | | ||||||| ||| |||||||||||| |
Sbjct 1440 TTCCACTAATATTGAGCCCAATGCTGTGT-CGTGGAGCATGTTT-TTGAAAGTGGATATG 1497
Query 823 ACTACTTTTCCGGACAGATTTT-A-TG-GAAGTCGAT--CTCACTACTT-CTTCATTGAC 876
| || || || | |||| | | || || || || | || ||||||||||
Sbjct 1498 AG-ACCACTC---ACTGGTTTTCAGTTTGACGTT-ATGGCTGGG-AGTTTCTTCATTGAC 1551
Query 877 GAGGAGAAAAAAGTCGCTGTGGTTTTCAAGAATGAACC-TGAATGGACCAT--G-GATT- 931
||||||| |||||||| |||||||| | ||| || | | | || || | ||
Sbjct 1552 CAGGAGAACAAAGTCGCCGTGGTTTTTGATCTTGACCCAT-A-TCCACAATCCGTGACCC 1609
Query 932 GTTC-CTACCAAACAGCTTACATTATTGGA-AA-A-GGAGGATATCT-CAAATCTGT-GA 985
|| | |||||||||||||||||| |||||| || | || ||||| || ||||||||| ||
Sbjct 1610 GT-CGCTACCAAACAGCTTACATCATTGGACAAGATGGTGGATA-CTTCAAATCTGTTGA 1667
Query 986 AATTCGGAGAAACTCCTAAT 1005
|| ||||||| |||| |||
Sbjct 1668 TAT-CGGAGAAGCTCCAAAT 1686
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 40334046186
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5