BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G66490.1 Length=1083 Score E Sequences producing significant alignments: (Bits) Value Ahg315612 jgi|Araly1|315612|fgenesh1_pm.C_scaffold_2000645 592 2e-168 Ahg312135 jgi|Araly1|312135|fgenesh1_pm.C_scaffold_1000915 104 1e-21 > Ahg315612 jgi|Araly1|315612|fgenesh1_pm.C_scaffold_2000645 Length=966 Score = 592 bits (320), Expect = 2e-168 Identities = 618/755 (82%), Gaps = 48/755 (6%) Strand=Plus/Plus Query 277 TTTAAAGTCTTTCATTGCGAAGGCTTGTTGTTATGCGTCTTCAGAGGTAACCGATGGCCT 336 ||| |||| |||||||| || ||||| |||||||||||| |||||| ||| | |||| Sbjct 124 TTTCAAGTATTTCATTGGGACGGCTTATTGTTATGCGTCATCAGAGACAACAGGTGGCGG 183 Query 337 GTAGTGTGGAACCCTTATCTGGGGGGAAC-AGGGTGGATTCAACCCATAAGCGATTTCCA 395 || ||||||||||||||| |||||| ||| | ||| |||| ||||||||| | | ||||| Sbjct 184 GTGGTGTGGAACCCTTATTTGGGGGAAACTA-GGTTGATTAAACCCATAAACAAATTCCA 242 Query 396 CAAATATC-AAGTATCAGACAAGTTTGCTTTCGGATACG------AGAACAAGAACCACT 448 || ||| | || ||| |||| ||||||||| ||||||| | ||||||||||| | Sbjct 243 CAGATA-CAAAATATTGGACATGTTTGCTTTAGGATACGATAACAACAACAAGAACCA-T 300 Query 449 -TTTTTGGATTTTATGATATCTACGATCTTAACTCTAGTGCATGGAAGGTTCTTGATGTC 507 || || |||| ||| |||||| || ||||||||| |||||||| ||||||||||||| Sbjct 301 CTTCCTGTCTTTTTTGAAATCTACAATTTTAACTCTAATGCATGGAGGGTTCTTGATGTC 360 Query 508 AATCCCGATTGTGATATAAAATGTGGCGTGTCTTTGAAAGGAAAAACTTACTTTTTTGCT 567 ||||| | ||||| |||||| | || || |||||||| ||||| ||||||||||||||| Sbjct 361 TATCCCCACTGTGACATAAAAAGCGGTGTATCTTTGAAGGGAAATACTTACTTTTTTGCT 420 Query 568 ------AAAG--AAA---TAG-CAAAAGCTCCAAATGTCAAAGATTTTTTAGTGTGTTTT 615 |||| ||| | | || |||||||||||| ||| ||||||| | |||||| Sbjct 421 CGAGAAAAAGTAAAAGGTTTGTCATCAGCTCCAAATGTTGAAGTTTTTTTACTATGTTTT 480 Query 616 GATTTTACTGCTGAGAGATTTGGACCGCGCCTTCCTCTGCCGTTTCACTCTTGCGGTTT- 674 ||||||||||| |||||||||||||||||||||||||||||||| ||||||| | |||| Sbjct 481 GATTTTACTGCCGAGAGATTTGGACCGCGCCTTCCTCTGCCGTTGCACTCTTAC-GTTTG 539 Query 675 GTTTTCAGAACATGTGACTTTATCTTGTGTAAGAGATGAGCACTTAGCTGTCTTATATCG 734 | |||||||||| | |||||||||||||||||||||||||||| | |||||||||| || Sbjct 540 GCTTTCAGAACACGCGACTTTATCTTGTGTAAGAGATGAGCACCTCGCTGTCTTATTTCA 599 Query 735 ACGGTACAATGGAGTAATGGAGATATATATTACAACTAAGATTGAGCCGAATGAGGTATT 794 ||||||||||| | ||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 600 ACGGTACAATGCAATAATGGAGATATATATTACAACTAAGATTGAGCCGAATGTGGTAT- 658 Query 795 CT-GGAGCAATTTCTTGAAAGTGGATCTCACTACTTTTCCGGACAGATTTTATGGAAGTC 853 || ||||||||||||||||||||||||||||||||||||| ||||| ||||||| | Sbjct 659 CTTGGAGCAATTTCTTGAAAGTGGATCTCACTACTTTTCCAGACAGGTTTTATGC---T- 714 Query 854 GATCTCACTACTTCTTCATTGACGAGGAGAAAAAAGTCGCTGTGGTTTTCAAGA-A-T-G 910 || | |||||||||||||||||||||||||||| |||||||||| | | | | Sbjct 715 GAG---AG--CTTCTTCATTGACGAGGAGAAAAAAGTCATTGTGGTTTTCGATTCACTCG 769 Query 911 AACCT-GAATGGACC-ATGGA-TTGTTCCTACCAAACAGCTTACATTATTGGA-AAAGGA 966 || || |||||| | | | || || ||||| |||| ||||||| |||||| |||| Sbjct 770 GTTCTAGA-TGGACCCA-G-ACTTCTTTCTACCGAACAACTTACATCATTGGAGAAAGT- 825 Query 967 GGATATCTCAAATCTGTGAAATTCGGAGAAACTCC 1001 |||||| |||||||||||||||| ||||||||||| Sbjct 826 GGATATTTCAAATCTGTGAAATTTGGAGAAACTCC 860 Score = 87.9 bits (47), Expect = 1e-16 Identities = 53/56 (95%), Gaps = 0/56 (0%) Strand=Plus/Plus Query 13 TCTGATCTTCCGGTGGCTTTGGTAGAAGAGATACTCTCTAGGGTTCCATTAACATC 68 |||||||||||| | ||||||||||| ||||||||||||||||||||||||||||| Sbjct 4 TCTGATCTTCCGTTAGCTTTGGTAGAGGAGATACTCTCTAGGGTTCCATTAACATC 59 > Ahg312135 jgi|Araly1|312135|fgenesh1_pm.C_scaffold_1000915 Length=1782 Score = 104 bits (56), Expect = 1e-21 Identities = 321/440 (73%), Gaps = 54/440 (12%) Strand=Plus/Plus Query 596 AAGATTTTTTAGTGTGTTTTGATTTTACTGCTGAGAGATTTGGACCGCGCCTTCCTCTGC 655 |||| |||||| | ||||||||||||||||||||||||||||||||||| |||||||| | Sbjct 1271 AAGACTTTTTACTCTGTTTTGATTTTACTGCTGAGAGATTTGGACCGCGTCTTCCTCTTC 1330 Query 656 CGTTTCACTCTTGCGGTTT-GTTTTCAGAACATGTGACTTTATCTTGTGT-AA-GA-GAT 711 | |||||||||| ||| | ||| | ||||||| |||||||||| || || ||| Sbjct 1331 CTTTTCACTCTTA---TTTCGACG--AGA-C-TGTGACTCTATCTTGTGTTAAAGAAGAT 1383 Query 712 GAGCACTTAGCTGTCTTATATC-GAC---GGTAC-A-ATG-GAGTAATGGAGATATATAT 764 ||| || | ||||||| | | | ||| | | ||| || | |||||||| | | Sbjct 1384 CAGCTCTC--CA-TCTTATACCAGCCCTTGGTGCCATATGAGA-TCATGGAGATTTGGGT 1439 Query 765 TACAACTAAGATTGAGCCGAATGAGGTATTC-TGGAGCAA-TTTCTTGAAAGTGGATCTC 822 | | ||||| |||||||| |||| || | | ||||||| ||| |||||||||||| | Sbjct 1440 TTCCACTAATATTGAGCCCAATGCTGTGT-CGTGGAGCATGTTT-TTGAAAGTGGATATG 1497 Query 823 ACTACTTTTCCGGACAGATTTT-A-TG-GAAGTCGAT--CTCACTACTT-CTTCATTGAC 876 | || || || | |||| | | || || || || | || |||||||||| Sbjct 1498 AG-ACCACTC---ACTGGTTTTCAGTTTGACGTT-ATGGCTGGG-AGTTTCTTCATTGAC 1551 Query 877 GAGGAGAAAAAAGTCGCTGTGGTTTTCAAGAATGAACC-TGAATGGACCAT--G-GATT- 931 ||||||| |||||||| |||||||| | ||| || | | | || || | || Sbjct 1552 CAGGAGAACAAAGTCGCCGTGGTTTTTGATCTTGACCCAT-A-TCCACAATCCGTGACCC 1609 Query 932 GTTC-CTACCAAACAGCTTACATTATTGGA-AA-A-GGAGGATATCT-CAAATCTGT-GA 985 || | |||||||||||||||||| |||||| || | || ||||| || ||||||||| || Sbjct 1610 GT-CGCTACCAAACAGCTTACATCATTGGACAAGATGGTGGATA-CTTCAAATCTGTTGA 1667 Query 986 AATTCGGAGAAACTCCTAAT 1005 || ||||||| |||| ||| Sbjct 1668 TAT-CGGAGAAGCTCCAAAT 1686 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 40334046186 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5