BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G66510.1
Length=1407
Score E
Sequences producing significant alignments: (Bits) Value
Ahg475684 jgi|Araly1|475684|fgenesh2_kg.2__814__AT1G66510.2 1775 0.0
Ahg908147 jgi|Araly1|908147|Al_scaffold_0002_1228 150 2e-35
> Ahg475684 jgi|Araly1|475684|fgenesh2_kg.2__814__AT1G66510.2
Length=1483
Score = 1775 bits (961), Expect = 0.0
Identities = 1155/1248 (93%), Gaps = 15/1248 (1%)
Strand=Plus/Plus
Query 25 AGACGAAGAAGAAGGAAGCTATGGATTCTGAGAAGGCACTAGAGCTTGTGAAGCATGGAG 84
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 AGAAGAAGAAGAAGGAAGCTATGGATTCTGAGAAGGCACTAGAGCTTGTGAAGCATGGAG 60
Query 85 CTACACTTCTATTTCTCGATGTTCCTCAATATACACTGGTCGGAATCGATACTCAGATAT 144
|||| ||||| |||||||||||||||||| ||||||| || ||||||||||||||| | |
Sbjct 61 CTACGCTTCTCTTTCTCGATGTTCCTCAACATACACTTGTTGGAATCGATACTCAGGTTT 120
Query 145 TCGCAGTTGGACCAG-CTTTCAAAGGGATTAAGATGATACCTCCTGGAATTCACTTTGTA 203
||||||||||||| | |||||||||||||||||||||||||||| |||||||||||||||
Sbjct 121 TCGCAGTTGGACC-GTCTTTCAAAGGGATTAAGATGATACCTCCCGGAATTCACTTTGTA 179
Query 204 TTCTATAGTTCATCGACAAGGGATGGTAGAGAGTTTTCACCCACCATTGGCTTCTTTGTT 263
||||||||||||||||| |||||||||| |||||||||||| ||||||||||||||||||
Sbjct 180 TTCTATAGTTCATCGACCAGGGATGGTAAAGAGTTTTCACCTACCATTGGCTTCTTTGTT 239
Query 264 GATGTTGCCCCTTCTCAGGTTATTGTACGCAAATGGAATCAGCAAGACGAGTGGTTAACC 323
||||||| | ||||||||||||||||||||| |||||||||||||||||||||||| ||
Sbjct 240 GATGTTGGTCTTTCTCAGGTTATTGTACGCAAGTGGAATCAGCAAGACGAGTGGTTAGCC 299
Query 324 AAAGTGTCTGAAGAAGAGGAAGAGAGATATTCTCAAGCAGTCAGGTCTTTAGAGTTTGAC 383
||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 300 AAAGTAACTGAAGAAGAGGAAGAGAGATATTCTCAAGCAGTCAGGTCTTTGGAGTTTGAC 359
Query 384 AAAAATCTTGGCCCATACAATTTAAAG-CAATATGGGGAGTGGAGGCACTTATCTAACTA 442
||| ||||||||||||||||||||| | ||||||||||| |||| |||||||||||||||
Sbjct 360 AAACATCTTGGCCCATACAATTTAA-GTCAATATGGGGAATGGAAGCACTTATCTAACTA 418
Query 443 CATTACAAAGGATGTTGTTGAAAAGTTTGAGCCAGTTGGAGGAGAAATAACAGTCACATA 502
||||| |||||||||||||||||||||||||||||||||||||||||||| ||||| ||
Sbjct 419 TATTACGAAGGATGTTGTTGAAAAGTTTGAGCCAGTTGGAGGAGAAATAACGGTCACCTA 478
Query 503 TGAATCTGCTATTCTAAAAGGTGGACCTAAAACGGCAATGGAAATAGCACTTGATACGCA 562
|||||||||||||||||||||||||||||||||||||||||||| |||||||||| | ||
Sbjct 479 TGAATCTGCTATTCTAAAAGGTGGACCTAAAACGGCAATGGAAAGAGCACTTGATGCACA 538
Query 563 GATGaaaaaaaGCAAGTTTACGACATCATCTACTGAGCAACCTAAAGGGAATAGGTTTTA 622
|||||| |||||||||||| || ||||||||||||||||||| |||||||||||||||||
Sbjct 539 GATGAAGAAAAGCAAGTTTGCGGCATCATCTACTGAGCAACCCAAAGGGAATAGGTTTTA 598
Query 623 CTACACGT-CTATTCCTCGGATTATAAAGCACAAGGGAATGTCTGGACAGGAGCTAACCT 681
||||| | ||||||||||||||||||||||||||||||||||||| || ||||| ||||
Sbjct 599 TTACAC-TACTATTCCTCGGATTATAAAGCACAAGGGAATGTCTGGGCAAGAGCTGACCT 657
Query 682 CTATGAATCTTGACAAGACTCAATTGCTAGAAAGCGTATTGTCAAAAGAGTACAAAGACT 741
||||||||||||||||||||||| ||||||||||| |||||||||| |||||||||||||
Sbjct 658 CTATGAATCTTGACAAGACTCAACTGCTAGAAAGCTTATTGTCAAAGGAGTACAAAGACT 717
Query 742 CGGAAGACTTGCTACTTGGGGAGCTACAATTTTCATTTGTTGCATTTTTGATGGGACAGT 801
||||||||||||| |||||||||||||||||||| ||||| |||||||||||||| ||||
Sbjct 718 CGGAAGACTTGCTTCTTGGGGAGCTACAATTTTCCTTTGTAGCATTTTTGATGGGGCAGT 777
Query 802 CTCTTGAATCGTTCATGCAGTGGAAGTCCATAGTTAGTCTTTTACTGGGCTGCACC-AGT 860
||||||||||||||||||||||||||||| |||||| |||| |||||||||||| |
Sbjct 778 CTCTTGAATCGTTCATGCAGTGGAAGTCCTTAGTTACTCTTCTACTGGGCTGCATTGAC- 836
Query 861 GCGCCCTTTCAGACGAGGAGTCAGCTATTTACAAAGTTCATCAAAGTCATCTACCACCAA 920
||||||||||| || |||||||| ||||||||||| || || |||||||||||||| |||
Sbjct 837 GCGCCCTTTCATACAAGGAGTCAACTATTTACAAACTTTATGAAAGTCATCTACCATCAA 896
Query 921 CTAAAATATGGACTACAAAAAGAGAATAGTGGTCCTGAGACGGGCATTCATGCGCTTCTT 980
||||||||||| ||||| ||||||| || ||||||||||| |||||||||||||||||||
Sbjct 897 CTAAAATATGGGCTACAGAAAGAGAGTAATGGTCCTGAGATGGGCATTCATGCGCTTCTT 956
Query 981 GATGATTCTTGGCTAGCTTCAGATAGCTTTCTGCATTTCCTTTGTAAGGACTTCTTTGCA 1040
|||||||||||||||||||| ||||||||||||||||| ||||| |||||||| |||||
Sbjct 957 GATGATTCTTGGCTAGCTTCCGATAGCTTTCTGCATTTGCTTTGCAAGGACTTTTTTGCT 1016
Query 1041 TTAGTGGAAGAGACGTCTGTAGTTGATGGAGATTTATTGTCATGGACAAGGAAGTTCAAA 1100
|||||||||||||| |||||||||||||||||||||||||| |||| |||||||||||||
Sbjct 1017 TTAGTGGAAGAGACTTCTGTAGTTGATGGAGATTTATTGTCTTGGATAAGGAAGTTCAAA 1076
Query 1101 GAGTTGCTTGAGAACAGATTAGGATGGGAGTTTCAGAAGAAGAGCGCTGTTGACGGGATT 1160
|||||||||||||||||||| |||||||| |||||||||||||||||| ||||||||||
Sbjct 1077 GAGTTGCTTGAGAACAGATTGGGATGGGAATTTCAGAAGAAGAGCGCTACTGACGGGATT 1136
Query 1161 TACTTTGAAGAAGATGATGAGTATGCTCCTGTGGTTGAGATGTTGGATGAAAGTCATGGA 1220
|||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1137 TACTTTGAGGAAGATGACGAGTATGCTCCTGTGGTTGAGATGTTGGATGAAAGTCATGGA 1196
Query 1221 GAATATATGGATAAAACCACTTAGACATCGATCGATGCAGGTCTTTGT 1268
||||||||| | |||||||||||||||||||||||| ||| |||
Sbjct 1197 GAATATATG--T----CCACTTAGACATCGATCGATGCAG-TCTCTGT 1237
> Ahg908147 jgi|Araly1|908147|Al_scaffold_0002_1228
Length=252
Score = 150 bits (81), Expect = 2e-35
Identities = 91/96 (95%), Gaps = 0/96 (0%)
Strand=Plus/Plus
Query 45 ATGGATTCTGAGAAGGCACTAGAGCTTGTGAAGCATGGAGCTACACTTCTATTTCTCGAT 104
|||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||
Sbjct 1 ATGGATTCTGAGAAGGCACTAGAGCTTGTGAAGCATGGAGCTACGCTTCTCTTTCTCGAT 60
Query 105 GTTCCTCAATATACACTGGTCGGAATCGATACTCAG 140
||||||||| ||||||| || |||||||||||||||
Sbjct 61 GTTCCTCAACATACACTTGTTGGAATCGATACTCAG 96
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 52602628345
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5