BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G66534.1 Length=414 Score E Sequences producing significant alignments: (Bits) Value Ahg919679 jgi|Araly1|919679|scaffold_100960.1 409 1e-113 Ahg315683 jgi|Araly1|315683|fgenesh1_pm.C_scaffold_2000716 340 4e-93 > Ahg919679 jgi|Araly1|919679|scaffold_100960.1 Length=598 Score = 409 bits (221), Expect = 1e-113 Identities = 338/394 (86%), Gaps = 10/394 (3%) Strand=Plus/Plus Query 6 TATAATTTTCATGTTTGTAGTTGCGACGTATTTCGGATTGAATGTAG-A--ATTTGAAAT 62 ||||||||| |||| ||| |||||||||| ||| |||||||||||| | ||||| || Sbjct 147 TATAATTTT-ATGTGTGTCGTTGCGACGTGTTTAAGATTGAATGTAGCATTTTTTGACAT 205 Query 63 GTTTCCATGTCCGTCAAACTATATTCTAATTACGAACGAGCTTGGTCCCGGTTTGGTTCT 122 ||||||||||||| |||| | ||| | |||||||||||||||||| ||||||||||||| Sbjct 206 GTTTCCATGTCCGAAAAACAAAATTTTCATTACGAACGAGCTTGGTTCCGGTTTGGTTCT 265 Query 123 ACAATAGCATTGTCACTCAAGAGACAACAATTTAAATGTCAAAAATTTACAGTTCAATGA 182 ||||| |||||||| |||||||||||||||||| | ||| ||||||||| ||||| | Sbjct 266 TCAATACCATTGTCATTCAAGAGACAACAATTTAGACGTCGCAAATTTACAATTCAACG- 324 Query 183 AAT-aaaaaaaaTTCGT-TTCGCAGATAAGATAGGAAAAAGGACAAGATGGACTTGTGTT 240 ||| ||| ||| |||| |||||||| ||| |||||| ||||||||||||||||||| || Sbjct 325 AATCAAAGGAAA-TCGTATTCGCAGACAAGTTAGGAAGAAGGACAAGATGGACTTGTCTT 383 Query 241 TTGAAACACGACTTATACATGCGATATTATTCAGAATTTATTGGATACAGAATGGCCAAT 300 |||||||||| |||||||||||||||||||||||||||||| | |||||||||||| || Sbjct 384 TTGAAACACGGCTTATACATGCGATATTATTCAGAATTTATAGCATACAGAATGGCTAAC 443 Query 301 GTTCGTCGATGTGGTGCTTCAC-GTCAGTGGATTGCCAGAAAAGCTGGAATTTACCTTAC 359 |||||||||| |||||||| || || | |||||||||||||||| ||||||||| ||| Sbjct 444 GTTCGTCGATATGGTGCTT-ACCGTGAATGGATTGCCAGAAAAGATGGAATTTATGTTAT 502 Query 360 AAGAAATCAAAATCCACCACCAGTGTTCCAACAT 393 |||||||| |||||| |||||| |||||| ||| Sbjct 503 AAGAAATCGAAATCCGCCACCAACGTTCCATCAT 536 > Ahg315683 jgi|Araly1|315683|fgenesh1_pm.C_scaffold_2000716 Length=390 Score = 340 bits (184), Expect = 4e-93 Identities = 273/316 (86%), Gaps = 6/316 (2%) Strand=Plus/Plus Query 103 CTTGGTCCCGGTTTGGTTCTACAATAGCATTGTCACTCAAGAGACAACAATTTAAATG-- 160 ||||||||| |||||||||| || || |||||||| ||||||||||||||| |||||| Sbjct 77 CTTGGTCCCAGTTTGGTTCTTCAGTACCATTGTCATTCAAGAGACAACAATCTAAATGTC 136 Query 161 TCAAAAATTTACAGTTCAATGAAATaaaaaaaaTTC-GTTTCGCAGATAAGATAGGAAAA 219 || ||||||||| |||||||||| ||| || || |||| ||| ||| |||| | | Sbjct 137 TCCCAAATTTACAATTCAATGAAACAAAGGTAA-TCAACTTCGGAGACAAGTTAGGGAGA 195 Query 220 AGGACAAGATGGACTTGTGTTTTGAAACACGACTTATACATGCGATATTATTCAGAATTT 279 |||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||| Sbjct 196 AGGACAAGATGGACTTGTCTTTTGAAACACGGCTTATACATGCGATATTATTCAGAATTT 255 Query 280 ATTGGATACAGAATGGCCAATGTTCGTCGATGTGGTGCTT-CACGTCAGTGGATTGCCAG 338 || |||||| |||||| ||| ||||||||||||||| | | ||||||| ||||||||||| Sbjct 256 ATAGGATACCGAATGGGCAACGTTCGTCGATGTGGT-CATACACGTCATTGGATTGCCAG 314 Query 339 AAAAGCTGGAATTTACCTTACAAGAAATCAAAATCCACCACCAGTGTTCCAACATTTTTG 398 ||||| ||||||||| |||||||||||||||||||| |||||| ||||||| ||| || Sbjct 315 AAAAGATGGAATTTATCTTACAAGAAATCAAAATCCGCCACCACTGTTCCATCATGGATG 374 Query 399 GAATAAAACTAAATAA 414 |||||||||||| ||| Sbjct 375 GAATAAAACTAATTAA 390 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 14880679710 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5