BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G66534.1
Length=414
Score E
Sequences producing significant alignments: (Bits) Value
Ahg919679 jgi|Araly1|919679|scaffold_100960.1 409 1e-113
Ahg315683 jgi|Araly1|315683|fgenesh1_pm.C_scaffold_2000716 340 4e-93
> Ahg919679 jgi|Araly1|919679|scaffold_100960.1
Length=598
Score = 409 bits (221), Expect = 1e-113
Identities = 338/394 (86%), Gaps = 10/394 (3%)
Strand=Plus/Plus
Query 6 TATAATTTTCATGTTTGTAGTTGCGACGTATTTCGGATTGAATGTAG-A--ATTTGAAAT 62
||||||||| |||| ||| |||||||||| ||| |||||||||||| | ||||| ||
Sbjct 147 TATAATTTT-ATGTGTGTCGTTGCGACGTGTTTAAGATTGAATGTAGCATTTTTTGACAT 205
Query 63 GTTTCCATGTCCGTCAAACTATATTCTAATTACGAACGAGCTTGGTCCCGGTTTGGTTCT 122
||||||||||||| |||| | ||| | |||||||||||||||||| |||||||||||||
Sbjct 206 GTTTCCATGTCCGAAAAACAAAATTTTCATTACGAACGAGCTTGGTTCCGGTTTGGTTCT 265
Query 123 ACAATAGCATTGTCACTCAAGAGACAACAATTTAAATGTCAAAAATTTACAGTTCAATGA 182
||||| |||||||| |||||||||||||||||| | ||| ||||||||| ||||| |
Sbjct 266 TCAATACCATTGTCATTCAAGAGACAACAATTTAGACGTCGCAAATTTACAATTCAACG- 324
Query 183 AAT-aaaaaaaaTTCGT-TTCGCAGATAAGATAGGAAAAAGGACAAGATGGACTTGTGTT 240
||| ||| ||| |||| |||||||| ||| |||||| ||||||||||||||||||| ||
Sbjct 325 AATCAAAGGAAA-TCGTATTCGCAGACAAGTTAGGAAGAAGGACAAGATGGACTTGTCTT 383
Query 241 TTGAAACACGACTTATACATGCGATATTATTCAGAATTTATTGGATACAGAATGGCCAAT 300
|||||||||| |||||||||||||||||||||||||||||| | |||||||||||| ||
Sbjct 384 TTGAAACACGGCTTATACATGCGATATTATTCAGAATTTATAGCATACAGAATGGCTAAC 443
Query 301 GTTCGTCGATGTGGTGCTTCAC-GTCAGTGGATTGCCAGAAAAGCTGGAATTTACCTTAC 359
|||||||||| |||||||| || || | |||||||||||||||| ||||||||| |||
Sbjct 444 GTTCGTCGATATGGTGCTT-ACCGTGAATGGATTGCCAGAAAAGATGGAATTTATGTTAT 502
Query 360 AAGAAATCAAAATCCACCACCAGTGTTCCAACAT 393
|||||||| |||||| |||||| |||||| |||
Sbjct 503 AAGAAATCGAAATCCGCCACCAACGTTCCATCAT 536
> Ahg315683 jgi|Araly1|315683|fgenesh1_pm.C_scaffold_2000716
Length=390
Score = 340 bits (184), Expect = 4e-93
Identities = 273/316 (86%), Gaps = 6/316 (2%)
Strand=Plus/Plus
Query 103 CTTGGTCCCGGTTTGGTTCTACAATAGCATTGTCACTCAAGAGACAACAATTTAAATG-- 160
||||||||| |||||||||| || || |||||||| ||||||||||||||| ||||||
Sbjct 77 CTTGGTCCCAGTTTGGTTCTTCAGTACCATTGTCATTCAAGAGACAACAATCTAAATGTC 136
Query 161 TCAAAAATTTACAGTTCAATGAAATaaaaaaaaTTC-GTTTCGCAGATAAGATAGGAAAA 219
|| ||||||||| |||||||||| ||| || || |||| ||| ||| |||| | |
Sbjct 137 TCCCAAATTTACAATTCAATGAAACAAAGGTAA-TCAACTTCGGAGACAAGTTAGGGAGA 195
Query 220 AGGACAAGATGGACTTGTGTTTTGAAACACGACTTATACATGCGATATTATTCAGAATTT 279
|||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||
Sbjct 196 AGGACAAGATGGACTTGTCTTTTGAAACACGGCTTATACATGCGATATTATTCAGAATTT 255
Query 280 ATTGGATACAGAATGGCCAATGTTCGTCGATGTGGTGCTT-CACGTCAGTGGATTGCCAG 338
|| |||||| |||||| ||| ||||||||||||||| | | ||||||| |||||||||||
Sbjct 256 ATAGGATACCGAATGGGCAACGTTCGTCGATGTGGT-CATACACGTCATTGGATTGCCAG 314
Query 339 AAAAGCTGGAATTTACCTTACAAGAAATCAAAATCCACCACCAGTGTTCCAACATTTTTG 398
||||| ||||||||| |||||||||||||||||||| |||||| ||||||| ||| ||
Sbjct 315 AAAAGATGGAATTTATCTTACAAGAAATCAAAATCCGCCACCACTGTTCCATCATGGATG 374
Query 399 GAATAAAACTAAATAA 414
|||||||||||| |||
Sbjct 375 GAATAAAACTAATTAA 390
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 14880679710
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5