BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G66550.1
Length=765
Score E
Sequences producing significant alignments: (Bits) Value
Ahg908152 jgi|Araly1|908152|Al_scaffold_0002_1233 556 6e-158
Ahg338870 jgi|Araly1|338870|fgenesh1_pg.C_scaffold_2000969 556 6e-158
> Ahg908152 jgi|Araly1|908152|Al_scaffold_0002_1233
Length=726
Score = 556 bits (301), Expect = 6e-158
Identities = 595/730 (82%), Gaps = 48/730 (7%)
Strand=Plus/Plus
Query 7 TCCAACATTGATCACAAGGCTATGGAAGCACTCCTCCGTGGCCAAGGATGCGCTAACAAC 66
|||||||| | ||| |||||| | | | |||||||||||||||||||||||||||||
Sbjct 7 TCCAACATCGCTCAAAAGGCTGTAGCTGTACTCCTCCGTGGCCAAGGATGCGCTAACAGT 66
Query 67 CTCAAGATTCTCCTTGAAAACGGCGAAAT-AAGCTCAGTTTCAACAGAACCA-CTCATCC 124
||||||| ||||| ||||| | |||| ||||||||||||||| | | || ||||||
Sbjct 67 CTCAAGACGCTCCTCCAAAACAAC-AAATCAAGCTCAGTTTCAACCG-AGCAGCTCATCA 124
Query 125 ACACCATTCTCGATTCTTTCTCACTTGCTCTGTCTTTTATGGATTCTCCTAATCATCCAC 184
||||||||||| ||||||||||||||||||| |||||| |||||||||||||||||| ||
Sbjct 125 ACACCATTCTCAATTCTTTCTCACTTGCTCTCTCTTTTGTGGATTCTCCTAATCATCTAC 184
Query 185 CATACCATGAATCCTCTTCT-CATAACATGGCAAGTCATATGT-CCCGGAGATCATCTAA 242
|| || |||| || || ||| || |||||| |||||||| | | ||| |||| |||| |
Sbjct 185 CACACAATGAGTCTTC-TCTACAAAACATGACAAGTCATGT-TCCCCAGAGACCATC--A 240
Query 243 GCAAGTACAACATCGCAGAAAACTTTGTGTAGCAGAAGGTTTAGTGAATTACA-ATCACG 301
||| || | | |||| || || |||||||||||||||| ||||| | |||
Sbjct 241 --AAG---AA-A----A-AAAA--TTATGGAGCAGAAGGTTTAGTGTTTTACAGA-GACG 286
Query 302 ATTCCCGGACTATGTGCC-C-CAATGATGGCTTCACCTGGAGGAAATATGGACAAAAAAC 359
| |||| ||| | || | |||||||||||||||||||||||||||||||||||||
Sbjct 287 AATCCCCGAC----T-CCACGGGATGATGGCTTCACCTGGAGGAAATATGGACAAAAAAC 341
Query 360 CATTAAAGCCTCAGCGCACAAAAGG--TGT-TACTATCGGTGTACCTATGCAAAAGACCA 416
||| ||| |||| ||||| ||||| | | || ||| ||| ||||||||||||||||
Sbjct 342 CATCAAAACCTCTCCGCACCAAAGGGCTCTGTA-TATATGTG--CCTATGCAAAAGACCA 398
Query 417 AAACTGCAATGCTACAAAGCGGGTGCAGAAGATCAAAGACAACCCTCCAGTGTACAGAAC 476
|||||||||||||| |||||||||||||| |||| |||||| |||||||| ||||||||
Sbjct 399 AAACTGCAATGCTAAAAAGCGGGTGCAGATGATCCAAGACAGTCCTCCAGTTTACAGAAC 458
Query 477 CACTTACT-TGGGAAAACATGTGTGTAAAGCTTTTGCAGTTCATGATGATACATATAGTT 535
|||||| | ||||||| ||||||||||||| |||||||||||||||||||||||| |||
Sbjct 459 CACTTA-TGTGGGAAAGCATGTGTGTAAAGATTTTGCAGTTCATGATGATACATACGGTT 517
Query 536 CC-ACGATGATTCGATTCGACCAAGTTGT-TCCTGAAC-CGATTATGCCGCAGCTCACAA 592
| | ||||| ||||||||||||||| || ||| || ||||||| || ||| |||
Sbjct 518 CTGAA-ATGATAAAATTCGACCAAGTTGTATC--GAAATCGGTTATGCCTCAACTCGCAA 574
Query 593 CAATTGACCACCAAGTAATTACCGTGGAGGAA-AACTCCGCAGAACATATCATGAACCAA 651
| ||||| | |||| ||||||| ||||||| || || |||| |||||||||||||||
Sbjct 575 CGATTGAGGAACAAGAAATTACCATGGAGGACGAAG-CCACAGACCATATCATGAACCAA 633
Query 652 GAATGTGATATTAATGATTATTTGGTGGATGATGACCCATTTTGGGCTAGTCAATTTCCC 711
|| ||||||||||||||| ||||||||||||||||| ||||||||||| |||||||||
Sbjct 634 GAGGGTGATATTAATGATTTTTTGGTGGATGATGACCAATTTTGGGCTACTCAATTTCCT 693
Query 712 CCGTTTCCAT 721
|| ||| |||
Sbjct 694 CCATTTTCAT 703
> Ahg338870 jgi|Araly1|338870|fgenesh1_pg.C_scaffold_2000969
Length=705
Score = 556 bits (301), Expect = 6e-158
Identities = 449/518 (87%), Gaps = 20/518 (4%)
Strand=Plus/Plus
Query 261 AAAACTTTGTGTAGCAGAAGGTTTAGTGAATTACA-ATCACGATTCCCGGACTATGTGCC 319
||||||||||| |||| |||||||||||||||||| | | ||||||| || | ||| |
Sbjct 195 AAAACTTTGTGGAGCACAAGGTTTAGTGAATTACAGA-GATGATTCCCCGATTCCGTGTC 253
Query 320 CCAATGATGGCTTCACCTGGAGGAAATATGGACAAAAAACCATTAAAGCCTCAGCGCACA 379
||||||||||||| |||||||||||||||||||||||||||| ||| ||||| |||||
Sbjct 254 CCAATGATGGCTTTGCCTGGAGGAAATATGGACAAAAAACCATCAAAACCTCACCGCACC 313
Query 380 AAAGGTGTTACTATCGGTGTACCTATGCAAAAGACCAAAACTGCAATGCTACAAAGCGGG 439
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 314 AAAGGTGTTACTATCGGTGTACCTATGCAAAAGACCAAAATTGCAATGCTACAAAGCGGG 373
Query 440 TGCAGAAGATCAAAGACAACCCTCCAGTGTACAGAACCACTTACT-TGGGAAAACATGTG 498
|||||||||||||||||||||||||||||||||||||||| || | ||||||||||||||
Sbjct 374 TGCAGAAGATCAAAGACAACCCTCCAGTGTACAGAACCACGTA-TATGGGAAAACATGTG 432
Query 499 TGTAAAGCTTTTGCAGTTCATGATGATACATATAGTTCCACGATGATTC-GATTCGACCA 557
|||| |||| || || ||||||||||||| | ||||||| ||||| | | ||||||||
Sbjct 433 TGTACTGCTTCTGTAGGTCATGATGATACACACAGTTCCAAAATGATCCAG-TTCGACCA 491
Query 558 AGTTGTTCCTGAACCGATTATGCCGCAGCTCACAACAATTGACCACCAAGTAATTACCGT 617
||||||| ||||| | ||||||| ||||||||||| ||||||||||||||||||||| |
Sbjct 492 AGTTGTTTCTGAATTGGTTATGCCTCAGCTCACAACGATTGACCACCAAGTAATTACCAT 551
Query 618 GGAGGA-AAACTCCGCAGAAC-ATATCATGAACCAAGAATGTGATAT---TA--A-TGAT 669
|||||| ||| || || | | ||||||||||||||||||||||||| || | ||||
Sbjct 552 GGAGGACAAAGTCA-CACA-CTATATCATGAACCAAGAATGTGATATCGATATTAATGAT 609
Query 670 TATTTGGTGGATGATGACCCATTTTGGGCT-AGTCAATTTCCCCCGTTTCCATC-GAGTG 727
|||||||||| | |||||| | |||||| | | | |||||||||| |||||||| || |
Sbjct 610 TATTTGGTGGGTTATGACCAAATTTGGG-TGAATGAATTTCCCCCATTTCCATCAGAC-G 667
Query 728 ACACAATGTTCTTGGAAAACATTTCTGCTTTTGATTAG 765
|||||||||| ||||| ||||| ||||||||||||||
Sbjct 668 ACACAATGTTTTTGGACAACATCGCTGCTTTTGATTAG 705
Score = 316 bits (171), Expect = 1e-85
Identities = 187/195 (96%), Gaps = 0/195 (0%)
Strand=Plus/Plus
Query 1 ATGGTTTCCAACATTGATCACAAGGCTATGGAAGCACTCCTCCGTGGCCAAGGATGCGCT 60
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1 ATGGTTTCCAACATTGATCACAAGGCTATGGAAGCACTCCTCCGTGGACAAGGATGCGCT 60
Query 61 AACAACCTCAAGATTCTCCTTGAAAACGGCGAAATAAGCTCAGTTTCAACAGAACCACTC 120
|||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 61 AACAGCCTCAAGATTCTCCTCGAAAACGGCGAAATAAGCTCAGTTTCAACAGAACCACTC 120
Query 121 ATCCACACCATTCTCGATTCTTTCTCACTTGCTCTGTCTTTTATGGATTCTCCTAATCAT 180
||| |||||||||||||||||||||| ||||||||||||||| ||||||||||||||| |
Sbjct 121 ATCAACACCATTCTCGATTCTTTCTCGCTTGCTCTGTCTTTTGTGGATTCTCCTAATCCT 180
Query 181 CCACCATACCATGAA 195
||||||||| |||||
Sbjct 181 CCACCATACTATGAA 195
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 28210958580
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5