BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G66560.1
Length=750
Score E
Sequences producing significant alignments: (Bits) Value
Ahg908152 jgi|Araly1|908152|Al_scaffold_0002_1233 933 0.0
Ahg338870 jgi|Araly1|338870|fgenesh1_pg.C_scaffold_2000969 483 1e-135
> Ahg908152 jgi|Araly1|908152|Al_scaffold_0002_1233
Length=726
Score = 933 bits (505), Expect = 0.0
Identities = 659/732 (90%), Gaps = 15/732 (2%)
Strand=Plus/Plus
Query 1 ATGTTCTCCAACATCGATCAAACA-GCTGTGGCAGCACTCCTCCGTGGCCAAGGATGCGC 59
|||| ||||||||||| ||||| | ||||| || | ||||||||||||||||||||||||
Sbjct 1 ATGTCCTCCAACATCGCTCAAA-AGGCTGTAGCTGTACTCCTCCGTGGCCAAGGATGCGC 59
Query 60 TAACAGTCTCAAGAGGCTCCTCGAAAACCACAAGTTAAGCTCAGATTCAACAGAGCCGCT 119
|||||||||||||| ||||||| ||||| |||| | |||||||| |||||| |||| |||
Sbjct 60 TAACAGTCTCAAGACGCTCCTCCAAAACAACAAATCAAGCTCAGTTTCAACCGAGCAGCT 119
Query 120 CATCTACACCATACTCAATTCTTTCTCACTTGCTCTCTCTTTTGTGGACCCGCCTAGTCT 179
|||| ||||||| ||||||||||||||||||||||||||||||||||| | |||| ||
Sbjct 120 CATCAACACCATTCTCAATTCTTTCTCACTTGCTCTCTCTTTTGTGGATTCTCCTAATCA 179
Query 180 TCTACCACACAATGAGTCTTCTCTTCAAAACATGACAAGTCATGTTCTTCAGAGATCATC 239
|||||||||||||||||||||||| |||||||||||||||||||||| |||||| ||||
Sbjct 180 TCTACCACACAATGAGTCTTCTCTACAAAACATGACAAGTCATGTTCCCCAGAGACCATC 239
Query 240 AAAGAAAAAATATTATGGAGCAGAAGATTTAGAGTATTACAGAGACGAATCCCCGACTCC 299
|||||||||| ||||||||||||||| ||||| || ||||||||||||||||||||||||
Sbjct 240 AAAGAAAAAAAATTATGGAGCAGAAGGTTTAGTGTTTTACAGAGACGAATCCCCGACTCC 299
Query 300 ACGCCCCGATGACGGCTTCACCTGGAGGAAATATGGACAAAAAACTATCAAAACCTCACC 359
||| ||||| |||||||||||||||||||||||||||||||| ||||||||||| ||
Sbjct 300 ACGG---GATGATGGCTTCACCTGGAGGAAATATGGACAAAAAACCATCAAAACCTCTCC 356
Query 360 GTACCAAAGG--TGT-TACTATCGGTGTACCTATGCAAAAGACCAAAACTGCAATGCTAG 416
| |||||||| | | || ||| ||| ||||||||||||||||||||||||||||||
Sbjct 357 GCACCAAAGGGCTCTGTA-TATATGTG--CCTATGCAAAAGACCAAAACTGCAATGCTAA 413
Query 417 AAAGCGGGTGCAGATGATCCAAGATAACCCTCCAGTGTACAGAACTACTTATTTGGGAAA 476
|||||||||||||||||||||||| | |||||||| |||||||| |||||| |||||||
Sbjct 414 AAAGCGGGTGCAGATGATCCAAGACAGTCCTCCAGTTTACAGAACCACTTATGTGGGAAA 473
Query 477 ACATGTGTGTAAAGCTGTTGCAGTTCATGATGATACATATGGTTCTGAAATGATAAAATT 536
||||||||||||| | |||||||||||||||||||||| ||||||||||||||||||||
Sbjct 474 GCATGTGTGTAAAGATTTTGCAGTTCATGATGATACATACGGTTCTGAAATGATAAAATT 533
Query 537 CGACCAAGTTGTATCTGAA-TCGGTTATGCCTCAACTCGCAACAATTGACGAACAAGCAA 595
||||||||||||||| ||| ||||||||||||||||||||||| ||||| ||||||| ||
Sbjct 534 CGACCAAGTTGTATC-GAAATCGGTTATGCCTCAACTCGCAACGATTGAGGAACAAGAAA 592
Query 596 TTACCATGGAGGACGAAGCCATAGACCATATCATGAACCAAGAATGTGATATTAATGATT 655
||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||
Sbjct 593 TTACCATGGAGGACGAAGCCACAGACCATATCATGAACCAAGAGGGTGATATTAATGATT 652
Query 656 TTTCTG-TGGATGATGACCCATTTTGGGCTAGTCAATTTCCTCCATTTTCATCGGAAGAC 714
||| || |||||||||||| ||||||||||| |||||||||||||||||||| |||||||
Sbjct 653 TTT-TGGTGGATGATGACCAATTTTGGGCTACTCAATTTCCTCCATTTTCATTGGAAGAC 711
Query 715 ATTATGTTTTTT 726
| |||||||||
Sbjct 712 CTGATGTTTTTT 723
> Ahg338870 jgi|Araly1|338870|fgenesh1_pg.C_scaffold_2000969
Length=705
Score = 483 bits (261), Expect = 1e-135
Identities = 434/517 (84%), Gaps = 13/517 (3%)
Strand=Plus/Plus
Query 243 GAAAAAATATTATGGAGCAGAAGATTTAGAGTATTACAGAGACGAATCCCCGACTCCACG 302
|||||| | || ||||||| ||| ||||| | |||||||||| || ||||||| ||| |
Sbjct 193 GAAAAACT-TTGTGGAGCACAAGGTTTAGTGAATTACAGAGATGATTCCCCGATTCCGTG 251
Query 303 CCCCGATGACGGCTTCACCTGGAGGAAATATGGACAAAAAACTATCAAAACCTCACCGTA 362
||| |||| ||||| ||||||||||||||||||||||||| ||||||||||||||| |
Sbjct 252 TCCCAATGATGGCTTTGCCTGGAGGAAATATGGACAAAAAACCATCAAAACCTCACCGCA 311
Query 363 CCAAAGGTGTTACTATCGGTGTACCTATGCAAAAGACCAAAACTGCAATGCTAGAAAGCG 422
|||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||
Sbjct 312 CCAAAGGTGTTACTATCGGTGTACCTATGCAAAAGACCAAAATTGCAATGCTACAAAGCG 371
Query 423 GGTGCAGATGATCCAAGATAACCCTCCAGTGTACAGAACTACTTATTTGGGAAAACATGT 482
|||||||| |||| |||| |||||||||||||||||||| || ||| |||||||||||||
Sbjct 372 GGTGCAGAAGATCAAAGACAACCCTCCAGTGTACAGAACCACGTATATGGGAAAACATGT 431
Query 483 GTGTAAAGCTGT-TGCAGTTCATGATGATACATATGGTTCTGAAATGATAAAATTCGACC 541
||||| ||| | || || ||||||||||||| | |||| ||||||| | |||||||
Sbjct 432 GTGTACTGCT-TCTGTAGGTCATGATGATACACACAGTTCCAAAATGATCCAGTTCGACC 490
Query 542 AAGTTGTATCTGAATCGGTTATGCCTCAACTCGCAACAATTGACGAACAAGCAATTACCA 601
||||||| ||||||| |||||||||||| ||| |||| |||||| | |||| ||||||||
Sbjct 491 AAGTTGTTTCTGAATTGGTTATGCCTCAGCTCACAACGATTGACCACCAAGTAATTACCA 550
Query 602 TGGAGGACGAAGCCATAGACCATATCATGAACCAAGAATGTGATAT---TA--A-TGATT 655
|||||||| ||| || | || ||||||||||||||||||||||||| || | |||||
Sbjct 551 TGGAGGACAAAGTCACACACTATATCATGAACCAAGAATGTGATATCGATATTAATGATT 610
Query 656 TTTCTG-TGGATGATGACCCATTTTGGGCT-AGTCAATTTCCTCCATTTTCATCGGAAGA 713
|| || ||| | |||||| | |||||| | | | ||||||| |||||| |||| || ||
Sbjct 611 ATT-TGGTGGGTTATGACCAAATTTGGG-TGAATGAATTTCCCCCATTTCCATCAGACGA 668
Query 714 CATTATGTTTTTTGACAATATTGCTAATCTTGATTAG 750
|| |||||||| ||||| || ||| | ||||||||
Sbjct 669 CACAATGTTTTTGGACAACATCGCTGCTTTTGATTAG 705
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 27639114825
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5