BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G66560.1 Length=750 Score E Sequences producing significant alignments: (Bits) Value Ahg908152 jgi|Araly1|908152|Al_scaffold_0002_1233 933 0.0 Ahg338870 jgi|Araly1|338870|fgenesh1_pg.C_scaffold_2000969 483 1e-135 > Ahg908152 jgi|Araly1|908152|Al_scaffold_0002_1233 Length=726 Score = 933 bits (505), Expect = 0.0 Identities = 659/732 (90%), Gaps = 15/732 (2%) Strand=Plus/Plus Query 1 ATGTTCTCCAACATCGATCAAACA-GCTGTGGCAGCACTCCTCCGTGGCCAAGGATGCGC 59 |||| ||||||||||| ||||| | ||||| || | |||||||||||||||||||||||| Sbjct 1 ATGTCCTCCAACATCGCTCAAA-AGGCTGTAGCTGTACTCCTCCGTGGCCAAGGATGCGC 59 Query 60 TAACAGTCTCAAGAGGCTCCTCGAAAACCACAAGTTAAGCTCAGATTCAACAGAGCCGCT 119 |||||||||||||| ||||||| ||||| |||| | |||||||| |||||| |||| ||| Sbjct 60 TAACAGTCTCAAGACGCTCCTCCAAAACAACAAATCAAGCTCAGTTTCAACCGAGCAGCT 119 Query 120 CATCTACACCATACTCAATTCTTTCTCACTTGCTCTCTCTTTTGTGGACCCGCCTAGTCT 179 |||| ||||||| ||||||||||||||||||||||||||||||||||| | |||| || Sbjct 120 CATCAACACCATTCTCAATTCTTTCTCACTTGCTCTCTCTTTTGTGGATTCTCCTAATCA 179 Query 180 TCTACCACACAATGAGTCTTCTCTTCAAAACATGACAAGTCATGTTCTTCAGAGATCATC 239 |||||||||||||||||||||||| |||||||||||||||||||||| |||||| |||| Sbjct 180 TCTACCACACAATGAGTCTTCTCTACAAAACATGACAAGTCATGTTCCCCAGAGACCATC 239 Query 240 AAAGAAAAAATATTATGGAGCAGAAGATTTAGAGTATTACAGAGACGAATCCCCGACTCC 299 |||||||||| ||||||||||||||| ||||| || |||||||||||||||||||||||| Sbjct 240 AAAGAAAAAAAATTATGGAGCAGAAGGTTTAGTGTTTTACAGAGACGAATCCCCGACTCC 299 Query 300 ACGCCCCGATGACGGCTTCACCTGGAGGAAATATGGACAAAAAACTATCAAAACCTCACC 359 ||| ||||| |||||||||||||||||||||||||||||||| ||||||||||| || Sbjct 300 ACGG---GATGATGGCTTCACCTGGAGGAAATATGGACAAAAAACCATCAAAACCTCTCC 356 Query 360 GTACCAAAGG--TGT-TACTATCGGTGTACCTATGCAAAAGACCAAAACTGCAATGCTAG 416 | |||||||| | | || ||| ||| |||||||||||||||||||||||||||||| Sbjct 357 GCACCAAAGGGCTCTGTA-TATATGTG--CCTATGCAAAAGACCAAAACTGCAATGCTAA 413 Query 417 AAAGCGGGTGCAGATGATCCAAGATAACCCTCCAGTGTACAGAACTACTTATTTGGGAAA 476 |||||||||||||||||||||||| | |||||||| |||||||| |||||| ||||||| Sbjct 414 AAAGCGGGTGCAGATGATCCAAGACAGTCCTCCAGTTTACAGAACCACTTATGTGGGAAA 473 Query 477 ACATGTGTGTAAAGCTGTTGCAGTTCATGATGATACATATGGTTCTGAAATGATAAAATT 536 ||||||||||||| | |||||||||||||||||||||| |||||||||||||||||||| Sbjct 474 GCATGTGTGTAAAGATTTTGCAGTTCATGATGATACATACGGTTCTGAAATGATAAAATT 533 Query 537 CGACCAAGTTGTATCTGAA-TCGGTTATGCCTCAACTCGCAACAATTGACGAACAAGCAA 595 ||||||||||||||| ||| ||||||||||||||||||||||| ||||| ||||||| || Sbjct 534 CGACCAAGTTGTATC-GAAATCGGTTATGCCTCAACTCGCAACGATTGAGGAACAAGAAA 592 Query 596 TTACCATGGAGGACGAAGCCATAGACCATATCATGAACCAAGAATGTGATATTAATGATT 655 ||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||| Sbjct 593 TTACCATGGAGGACGAAGCCACAGACCATATCATGAACCAAGAGGGTGATATTAATGATT 652 Query 656 TTTCTG-TGGATGATGACCCATTTTGGGCTAGTCAATTTCCTCCATTTTCATCGGAAGAC 714 ||| || |||||||||||| ||||||||||| |||||||||||||||||||| ||||||| Sbjct 653 TTT-TGGTGGATGATGACCAATTTTGGGCTACTCAATTTCCTCCATTTTCATTGGAAGAC 711 Query 715 ATTATGTTTTTT 726 | ||||||||| Sbjct 712 CTGATGTTTTTT 723 > Ahg338870 jgi|Araly1|338870|fgenesh1_pg.C_scaffold_2000969 Length=705 Score = 483 bits (261), Expect = 1e-135 Identities = 434/517 (84%), Gaps = 13/517 (3%) Strand=Plus/Plus Query 243 GAAAAAATATTATGGAGCAGAAGATTTAGAGTATTACAGAGACGAATCCCCGACTCCACG 302 |||||| | || ||||||| ||| ||||| | |||||||||| || ||||||| ||| | Sbjct 193 GAAAAACT-TTGTGGAGCACAAGGTTTAGTGAATTACAGAGATGATTCCCCGATTCCGTG 251 Query 303 CCCCGATGACGGCTTCACCTGGAGGAAATATGGACAAAAAACTATCAAAACCTCACCGTA 362 ||| |||| ||||| ||||||||||||||||||||||||| ||||||||||||||| | Sbjct 252 TCCCAATGATGGCTTTGCCTGGAGGAAATATGGACAAAAAACCATCAAAACCTCACCGCA 311 Query 363 CCAAAGGTGTTACTATCGGTGTACCTATGCAAAAGACCAAAACTGCAATGCTAGAAAGCG 422 |||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||| Sbjct 312 CCAAAGGTGTTACTATCGGTGTACCTATGCAAAAGACCAAAATTGCAATGCTACAAAGCG 371 Query 423 GGTGCAGATGATCCAAGATAACCCTCCAGTGTACAGAACTACTTATTTGGGAAAACATGT 482 |||||||| |||| |||| |||||||||||||||||||| || ||| ||||||||||||| Sbjct 372 GGTGCAGAAGATCAAAGACAACCCTCCAGTGTACAGAACCACGTATATGGGAAAACATGT 431 Query 483 GTGTAAAGCTGT-TGCAGTTCATGATGATACATATGGTTCTGAAATGATAAAATTCGACC 541 ||||| ||| | || || ||||||||||||| | |||| ||||||| | ||||||| Sbjct 432 GTGTACTGCT-TCTGTAGGTCATGATGATACACACAGTTCCAAAATGATCCAGTTCGACC 490 Query 542 AAGTTGTATCTGAATCGGTTATGCCTCAACTCGCAACAATTGACGAACAAGCAATTACCA 601 ||||||| ||||||| |||||||||||| ||| |||| |||||| | |||| |||||||| Sbjct 491 AAGTTGTTTCTGAATTGGTTATGCCTCAGCTCACAACGATTGACCACCAAGTAATTACCA 550 Query 602 TGGAGGACGAAGCCATAGACCATATCATGAACCAAGAATGTGATAT---TA--A-TGATT 655 |||||||| ||| || | || ||||||||||||||||||||||||| || | ||||| Sbjct 551 TGGAGGACAAAGTCACACACTATATCATGAACCAAGAATGTGATATCGATATTAATGATT 610 Query 656 TTTCTG-TGGATGATGACCCATTTTGGGCT-AGTCAATTTCCTCCATTTTCATCGGAAGA 713 || || ||| | |||||| | |||||| | | | ||||||| |||||| |||| || || Sbjct 611 ATT-TGGTGGGTTATGACCAAATTTGGG-TGAATGAATTTCCCCCATTTCCATCAGACGA 668 Query 714 CATTATGTTTTTTGACAATATTGCTAATCTTGATTAG 750 || |||||||| ||||| || ||| | |||||||| Sbjct 669 CACAATGTTTTTGGACAACATCGCTGCTTTTGATTAG 705 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 27639114825 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5