BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G66570.1
Length=1614
Score E
Sequences producing significant alignments: (Bits) Value
Ahg487420 jgi|Araly1|487420|fgenesh2_kg.6__554__AT1G66570.1 2154 0.0
Ahg908151 jgi|Araly1|908151|Al_scaffold_0002_1232 2058 0.0
Ahg926547 jgi|Araly1|926547|scaffold_202108.1 948 0.0
Ahg319456 jgi|Araly1|319456|fgenesh1_pm.C_scaffold_3002472 800 0.0
Ahg925866 jgi|Araly1|925866|scaffold_201427.1 283 2e-75
> Ahg487420 jgi|Araly1|487420|fgenesh2_kg.6__554__AT1G66570.1
Length=1557
Score = 2154 bits (1166), Expect = 0.0
Identities = 1436/1566 (92%), Gaps = 19/1566 (1%)
Strand=Plus/Plus
Query 1 GTCTTTAAGAGACAAGCCCAC-TTTCTTTCATCTCCT-CAGCGCCAACAACAAACACAAC 58
||||||||||| ||||||| | ||||||||||||||| || | |||||| ||||||||||
Sbjct 1 GTCTTTAAGAGGCAAGCCC-CGTTTCTTTCATCTCCTCCATCACCAACACCAAACACAAC 59
Query 59 CTC-TAAGACAAGGGTGAAGAAGATGAGTGACCTCCAAGCAAACAAAGATGAGACGACTG 117
||| ||||| || ||| |||||||||||||||||||||||| ||||||| | || ||
Sbjct 60 CTCTTAAGATAA-GGT---GAAGATGAGTGACCTCCAAGCAAAAAAAGATGCGGCGGCTT 115
Query 118 TGGATAGACAG---TCTTCCTCGTCGGTGGATCTTGATGGGCCATCTCCGCTGAGAAAGA 174
||||||||||| ||||||||||| | || ||||||||||||||| |||||||||||||
Sbjct 116 TGGATAGACAGTCTTCTTCCTCGTCTGCGGTTCTTGATGGGCCATCACCGCTGAGAAAGA 175
Query 175 TGATATCGGTGGCTTCTATTGCTGCCGGTATTCAGTTTGGTTGGGCTCTTCAACTGTCTC 234
||||||||||||||||||| |||||||||||||||||||||||||||||||| || ||||
Sbjct 176 TGATATCGGTGGCTTCTATCGCTGCCGGTATTCAGTTTGGTTGGGCTCTTCAGCTTTCTC 235
Query 235 TGCTTACTCCATACGTGCAGCTTCTTGGAGTCCCACACAAATGGCCATCTTTCATTTGGC 294
|||| |||||||||||||||||||| ||||||||||| |||||| |||||||||| ||||
Sbjct 236 TGCTAACTCCATACGTGCAGCTTCTCGGAGTCCCACATAAATGGTCATCTTTCATATGGC 295
Query 295 TTTGCGGTCCTGTCTCCGGCTTGCTTGTCCAGCCATCAGTCGGTTACTTCAGCGACCGAT 354
| || |||||| |||||||| |||||||||||||||| || ||||||||||||||| |||
Sbjct 296 TCTGTGGTCCTATCTCCGGCCTGCTTGTCCAGCCATCCGTTGGTTACTTCAGCGACAGAT 355
Query 355 GCACGTCAAGATTCGGACGTCGTCGTCCTTTCATCGCCACGGGTGCTTTGCTGGTCGCTG 414
||| |||||||||||| |||||||||||||||||||||||||| || ||||| |||||
Sbjct 356 GCAAGTCAAGATTCGGTCGTCGTCGTCCTTTCATCGCCACGGGCGCCTTGCTTGTCGCCC 415
Query 415 TTTCTGTTGTACTAATCGGATAT-GCGGCTGATTTCGGCCACAGCATGGGAGACAAAATC 473
|| ||||| |||||||||||| | ||||||||||||||||||| ||||||||||||| ||
Sbjct 416 TTGCTGTTATACTAATCGGAT-TCGCGGCTGATTTCGGCCACACCATGGGAGACAAACTC 474
Query 474 GACAAACCTGTCAAGATGCGAGCCGTT-GTTATCTTCGCTCTCGGGTTCTGGATCCTTGA 532
||| || |||||||||||||||||||| ||| |||||| | |||| ||||||||||||||
Sbjct 475 GACGAAGCTGTCAAGATGCGAGCCGTTGGTT-TCTTCGTTATCGGTTTCTGGATCCTTGA 533
Query 533 CGTGGCTAACAACACTCTCCAAGGACCATGCCGTGCTTTTCTTGGTGATTTAGCAGCTGG 592
|||||||||||||||||| |||||||| || || ||||||||||||||||||||||||||
Sbjct 534 CGTGGCTAACAACACTCTTCAAGGACCTTGTCGCGCTTTTCTTGGTGATTTAGCAGCTGG 593
Query 593 AGACGCTCAGAAAACGCGAACGGCAAACGCGTTTTTCTCTTTCTTCATGGCCGTTGGAAA 652
||||||| ||||||||||||| ||||||||| ||||||||||||||||||||||||||||
Sbjct 594 AGACGCTAAGAAAACGCGAACAGCAAACGCGATTTTCTCTTTCTTCATGGCCGTTGGAAA 653
Query 653 CGTTTTGGGATATGCGGCAGGATCGTACACTAACCTCTACAAGATCTTCCCTTTCACAAT 712
|||||| ||||| || ||||||||||||||||||||| ||||||| |||||||||||| |
Sbjct 654 CGTTTTAGGATACGCTGCAGGATCGTACACTAACCTCCACAAGATTTTCCCTTTCACAGT 713
Query 713 GACTAAAGCGTGCGACATATATTGCGCAAATCTCAAGAGTTGTTTCTTCCTTTCCATCAC 772
||||||||| |||||||| |||||||||||||||||||| |||||| || ||||||||||
Sbjct 714 GACTAAAGCATGCGACATCTATTGCGCAAATCTCAAGAGCTGTTTCATCATTTCCATCAC 773
Query 773 TCTCCTCCTAGTCGTCACCATCATAGCTCTATGGTACGTGGAAGACAAGCAATGGTCGCC 832
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 774 TCTCCTCCTAGTCGTCACCATCATAGCTCTTTGGTACGTGGAAGACAAGCAATGGTCGCC 833
Query 833 TAAGGCAGACTC-CGACAACGAGAAAACTCCGTTCTTCGGTGAGATCTTTGGAGCTTTCA 891
||||||||||| || || || |||||||| |||||||| |||||||||||||||||||
Sbjct 834 AAAGGCAGACTCTGGA-AAAGATAAAACTCCTTTCTTCGGCGAGATCTTTGGAGCTTTCA 892
Query 892 AGGTAATGAAACGTCCAATGTGGATGCTACTAATCGTCACGGCCTTGAACTGGATCGCAT 951
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 893 AGGTGATGAAACGTCCAATGTGGATGCTACTAATCGTCACGGCCTTGAACTGGATCGCGT 952
Query 952 GGTTCCCTTTTCTTTTATACGATACTGATTGGATGGGTCGTGAAGTGTATGGTGGAGACT 1011
|||||||||| |||||||||||||| |||||| |||||||||||||||| ||||||||||
Sbjct 953 GGTTCCCTTTCCTTTTATACGATACAGATTGGGTGGGTCGTGAAGTGTACGGTGGAGACT 1012
Query 1012 CAAAAGGAGATGACAAAATGAAGAAACTATACAACCAAGGAATTCATGTTGGTGCATTGG 1071
|||||||||||||||||||||||||||||||||||||||||||||| |||||| | ||||
Sbjct 1013 CAAAAGGAGATGACAAAATGAAGAAACTATACAACCAAGGAATTCAAGTTGGTTCGTTGG 1072
Query 1072 GATTGATGCTTAACTCTATCGTTCTTGGAGTCATGTCACTTGGTATTGAAGGTATTAGTA 1131
||||||||||||||||||||||||||||| ||||||| || ||||||||||| |||||||
Sbjct 1073 GATTGATGCTTAACTCTATCGTTCTTGGATTCATGTCGCTCGGTATTGAAGGGATTAGTA 1132
Query 1132 GGAAGATGGGAGGAGCTAAAAGGCTTTGGGGAGCTGTGAATATTATTCTCGCCGTGTGTT 1191
|||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1133 GGAAAATGGGAGGAGCTAAAAGGCTTTGGGGAGCTGTGAATATAATTCTCGCCGTGTGTT 1192
Query 1192 TGGCAATGACGGTTTTGGTTACTAAAAAGGCGGAGGAGCACCGGA-GAATCGCCGGTCCA 1250
|||||||||| |||||||||||||||||||| ||||||||||||| || ||||||||||
Sbjct 1193 TGGCAATGACAGTTTTGGTTACTAAAAAGGCCGAGGAGCACCGGAAGA-TCGCCGGTCCG 1251
Query 1251 ATGGCCCTTCCTACCGATGGCATCAGAGCTGGAGCATTGACTCTCTTTGCTCTTCTTGGA 1310
|||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1252 ATGGCCCTTCCTACGGATGGCATCAGAGCTGGAGCATTGACCCTCTTTGCTCTTCTTGGA 1311
Query 1311 ATTCCTCTTGCTATTACATTCAGTATTCCGTTCGCACTAGCTTCTATAATATCAAGCAGC 1370
|||||||| ||||||||||| ||||||||||| ||||||||||| || || |||||||||
Sbjct 1312 ATTCCTCTGGCTATTACATTTAGTATTCCGTTTGCACTAGCTTCCATTATTTCAAGCAGC 1371
Query 1371 TCCGGCGCCGGTCAAAGACTTTCTCTAGGAGTTTTAAACATGGCAATTGTCATACCACAA 1430
||||||||||| ||| |||| ||||||||||||||||| |||||||| || |||||||||
Sbjct 1372 TCCGGCGCCGGCCAAGGACTCTCTCTAGGAGTTTTAAATATGGCAATAGTGATACCACAA 1431
Query 1431 ATGATTGTATCGTTTGGAGTTGGTCCTATTGATGCGTTATTTGGAGATGGAAACTTACCA 1490
||| |||||||||||| |||||||||||| ||||| |||||||||| |||||||||||||
Sbjct 1432 ATGGTTGTATCGTTTGCAGTTGGTCCTATCGATGCCTTATTTGGAGGTGGAAACTTACCA 1491
Query 1491 GGATTTGTGGTCGGAGCTATTGCAGCGGCAGTCAGCAGTATTGTGGCatttaccgtttta 1550
|||||||||||||||||||||||||||||| | |||||| |||||||||||||||| |||
Sbjct 1492 GGATTTGTGGTCGGAGCTATTGCAGCGGCAATTAGCAGTGTTGTGGCATTTACCGTATTA 1551
Query 1551 ccttaa 1556
||||||
Sbjct 1552 CCTTAA 1557
> Ahg908151 jgi|Araly1|908151|Al_scaffold_0002_1232
Length=1485
Score = 2058 bits (1114), Expect = 0.0
Identities = 1365/1487 (92%), Gaps = 13/1487 (1%)
Strand=Plus/Plus
Query 81 ATGAGTGACCTCCAAGCAAACAAAGATGAGACGACTGTGGATAGACAG---TCTTCCTCG 137
|||||||||||||||||||| ||||||| | || || |||||||||| |||||||||
Sbjct 1 ATGAGTGACCTCCAAGCAAAAAAAGATGTGGCGGTTGGGGATAGACAGTCTTCTTCCTCG 60
Query 138 TCGGTGGATCTTGATGGGCCATCTCCGCTGAGAAAGATGATATCGGTGGCTTCTATTGCT 197
||| ||| ||||||||||||||| ||||| |||||||||||||||||||||||||| ||
Sbjct 61 TCGATGGTTCTTGATGGGCCATCGCCGCTAAGAAAGATGATATCGGTGGCTTCTATCGCC 120
Query 198 GCCGGTATTCAGTTTGGTTGGGCTCTTCAACTGTCTCTGCTTACTCCATACGTGCAGCTT 257
||||||||||||||||||||||||||||| || |||||||| ||||||||||| ||||||
Sbjct 121 GCCGGTATTCAGTTTGGTTGGGCTCTTCAGCTATCTCTGCTAACTCCATACGTTCAGCTT 180
Query 258 CTTGGAGTCCCACACAAATGGCCATCTTTCATTTGG--C--T-T-TGCGGTCCTGTCTCC 311
|| ||||||||||| |||||| |||||||||| ||| | | | || |||||| |||||
Sbjct 181 CTCGGAGTCCCACATAAATGGTCATCTTTCATATGGCTCTGTCTCTGTGGTCCTATCTCC 240
Query 312 GGCTTGCTTGTCCAGCCATCAGTCGGTTACTTCAGCGACCGATGCACGTCAAGATTCGGA 371
|||||||||||||||||||| || ||||||||||||||| |||||| ||||||||||||
Sbjct 241 GGCTTGCTTGTCCAGCCATCCGTTGGTTACTTCAGCGACAGATGCAAGTCAAGATTCGGT 300
Query 372 CGTCGTCGTCCTTTCATCGCCACGGGTGCTTTGCTGGTCGCTGTTTCTGTTGTACTAATC 431
|||||||||||||||||||||||| |||| ||||| ||||| || ||||| ||||||||
Sbjct 301 CGTCGTCGTCCTTTCATCGCCACGAGTGCCTTGCTTGTCGCCCTTGCTGTTATACTAATC 360
Query 432 GGATAT-GCGGCTGATTTCGGCCACAGCATGGGAGACAAAATCGACAAACCTGTCAAGAT 490
|||| | |||||||||||||| |||| ||||||||||||| ||||| || ||||||||||
Sbjct 361 GGAT-TCGCGGCTGATTTCGGGCACACCATGGGAGACAAACTCGACGAAGCTGTCAAGAT 419
Query 491 GCGAGCCGTT-GTTATCTTCGCTCTCGGGTTCTGGATCCTTGACGTGGCTAACAACACTC 549
|||||||||| ||| |||||| | |||| |||||||||||||||||||||||||||||||
Sbjct 420 GCGAGCCGTTGGTT-TCTTCGTTGTCGGTTTCTGGATCCTTGACGTGGCTAACAACACTC 478
Query 550 TCCAAGGACCATGCCGTGCTTTTCTTGGTGATTTAGCAGCTGGAGACGCTCAGAAAACGC 609
| |||||||| || || ||||||||||||||||||||||||||||||||| |||||||||
Sbjct 479 TTCAAGGACCTTGTCGCGCTTTTCTTGGTGATTTAGCAGCTGGAGACGCTAAGAAAACGC 538
Query 610 GAACGGCAAACGCGTTTTTCTCTTTCTTCATGGCCGTTGGAAACGTTTTGGGATATGCGG 669
|||| |||||||| |||||||||| ||||||||||||||||||||||||||||| || |
Sbjct 539 GAACAGCAAACGCAATTTTCTCTTTTTTCATGGCCGTTGGAAACGTTTTGGGATACGCTG 598
Query 670 CAGGATCGTACACTAACCTCTACAAGATCTTCCCTTTCACAATGACTAAAGCGTGCGACA 729
|||||||||||||||||||| ||||||||||||||||||| |||||||||| | |||||
Sbjct 599 CAGGATCGTACACTAACCTCCACAAGATCTTCCCTTTCACGGTGACTAAAGCATACGACA 658
Query 730 TATATTGCGCAAATCTCAAGAGTTGTTTCTTCCTTTCCATCACTCTCCTCCTAGTCGTCA 789
| |||||||||||||||||||| |||||| || |||||||||||||||| ||||||||||
Sbjct 659 TCTATTGCGCAAATCTCAAGAGCTGTTTCATCATTTCCATCACTCTCCTTCTAGTCGTCA 718
Query 790 CCATCATAGCTCTATGGTACGTGGAAGACAAGCAATGGTCGCCTAAGGCAGACTCCGACA 849
||||||||||||| ||||||||||||||||||||||||||||| ||||||||||| || |
Sbjct 719 CCATCATAGCTCTTTGGTACGTGGAAGACAAGCAATGGTCGCCAAAGGCAGACTCTGAGA 778
Query 850 ACGAGAAAACTCCGTTCTTCGGTGAGATCTTTGGAGCTTTCAAGGTAATGAAACGTCCAA 909
| || ||||||||||||||||| ||||||||||||||||||||||| |||||||||||||
Sbjct 779 ATGATAAAACTCCGTTCTTCGGCGAGATCTTTGGAGCTTTCAAGGTGATGAAACGTCCAA 838
Query 910 TGTGGATGCTACTAATCGTCACGGCCTTGAACTGGATCGCATGGTTCCCTTTTCTTTTAT 969
||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 839 TGTGGATGCTATTAATCGTCACGGCCTTGAACTGGATCGCGTGGTTCCCTTTTCTTTTAT 898
Query 970 ACGATACTGATTGGATGGGTCGTGAAGTGTATGGTGGAGACTCAAAAGGAGATGACAAAA 1029
||||||| |||||| ||||| |||||||||| ||||||||||||||||||||||||||||
Sbjct 899 ACGATACAGATTGGGTGGGTGGTGAAGTGTACGGTGGAGACTCAAAAGGAGATGACAAAA 958
Query 1030 TGAAGAAACTATACAACCAAGGAATTCATGTTGGTGCATTGGGATTGATGCTTAACTCTA 1089
|||||||||||||||||||||||||||| |||||| | ||||||||||||||||||||||
Sbjct 959 TGAAGAAACTATACAACCAAGGAATTCAAGTTGGTTCGTTGGGATTGATGCTTAACTCTA 1018
Query 1090 TCGTTCTTGGAGTCATGTCACTTGGTATTGAAGGTATTAGTAGGAAGATGGGAGGAGCTA 1149
||||||||||| ||||||| || ||||||||||| ||||||| ||| |||||||||||||
Sbjct 1019 TCGTTCTTGGATTCATGTCGCTCGGTATTGAAGGGATTAGTAAGAAAATGGGAGGAGCTA 1078
Query 1150 AAAGGCTTTGGGGAGCTGTGAATATTATTCTCGCCGTGTGTTTGGCAATGACGGTTTTGG 1209
||||||||||||||||||||||||| || || |||||||||||||||||||||||||||
Sbjct 1079 AAAGGCTTTGGGGAGCTGTGAATATCATCCTTGCCGTGTGTTTGGCAATGACGGTTTTGA 1138
Query 1210 TTACTAAAAAGGCGGAGGAGCACCGGAGAATCGCCGGTCCAATGGCCCTTCCTACCGATG 1269
|||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1139 TTACTAAAAAGGAGGAGGAGCACCGGAGAATCGCCGGTCCGATGGCCCTTCCTACCGATG 1198
Query 1270 GCATCAGAGCTGGAGCATTGACTCTCTTTGCTCTTCTTGGAATTCCTCTTGCTATTACAT 1329
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1199 GCATCAGAGCTGGAGCATTAACTCTCTTTGCTCTTCTTGGAATTCCTCTTGCTATTACAT 1258
Query 1330 TCAGTATTCCGTTCGCACTAGCTTCTATAATATCAAGCAGCTCCGGCGCCGGTCAAAGAC 1389
||||||||||||| ||||||||||| ||||| |||||||||||||||||||||||| |||
Sbjct 1259 TCAGTATTCCGTTTGCACTAGCTTCCATAATCTCAAGCAGCTCCGGCGCCGGTCAAGGAC 1318
Query 1390 TTTCTCTAGGAGTTTTAAACATGGCAATTGTCATACCACAAATGATTGTATCGTTTGGAG 1449
| |||||||||||||||||||||||||| || || |||||||||||||||||||||||||
Sbjct 1319 TATCTCTAGGAGTTTTAAACATGGCAATAGTGATTCCACAAATGATTGTATCGTTTGGAG 1378
Query 1450 TTGGTCCTATTGATGCGTTATTTGGAGATGGAAACTTACCAGGATTTGTGGTCGGAGCTA 1509
|||||||||||||||| |||||||||| ||||||||||||||||||||| || |||||||
Sbjct 1379 TTGGTCCTATTGATGCATTATTTGGAGGTGGAAACTTACCAGGATTTGTTGTTGGAGCTA 1438
Query 1510 TTGCAGCGGCAGTCAGCAGTATTGTGGCatttaccgttttaccttaa 1556
||||||||||| |||||||| ||||||||||||| ||||| ||||||
Sbjct 1439 TTGCAGCGGCAATCAGCAGTGTTGTGGCATTTACTGTTTTGCCTTAA 1485
> Ahg926547 jgi|Araly1|926547|scaffold_202108.1
Length=1586
Score = 948 bits (513), Expect = 0.0
Identities = 1119/1405 (80%), Gaps = 67/1405 (5%)
Strand=Plus/Plus
Query 156 CCATCTCCGCTGAG-AAAGATGATATCGGTGGCTTCTATTGCTGCCGGTATTCAGTTTGG 214
||||| ||||| | ||| || || || || ||||| || || || ||| | ||||| ||
Sbjct 103 CCATCGCCGCTTCGTAAA-ATCATCTCCGTCGCTTCCATCGCCGCTGGTGTACAGTTCGG 161
Query 215 TTGGGCTCTT-CAACTGTCTCTGCTTACTCCATACGTGCAGCTTCTTGGAGTCCCACACA 273
||||| ||| || || ||||| || ||||| ||||| || || |||||| |||||||||
Sbjct 162 GTGGGC-CTTACAGCTCTCTCTTCTGACTCCGTACGTTCAACTCCTTGGAATCCCACACA 220
Query 274 AATGGCCATCTTTCATTTGGCTTTGCGGTCCTGTCTCCGGCTTGCTTGTCCAGCC-ATCA 332
||||| ||||| |||||||||| || ||||| ||||||||| || |||| ||||| |||
Sbjct 221 AATGGTCATCTCTCATTTGGCTCTGTGGTCCAGTCTCCGGCATGATTGTTCAGCCAATC- 279
Query 333 GTCGGTTACTTCAGCGACCGATGCACGTCAAGATTCGGACGTCGTCGTCCTTTCATCGCC 392
||||||| | ||| |||||||||| ||| |||||||| || |||||||||||||||| |
Sbjct 280 GTCGGTTTCCACAGTGACCGATGCAGGTCCAGATTCGGTCGCCGTCGTCCTTTCATCG-C 338
Query 393 A-CGGGTGCTTTGCTGGTCGCTGTTTCTGTTGTACTAATCGGATATGCGGCTGATTTCGG 451
| | || || || |||||||| | ||| | || ||||| || || || ||||||||
Sbjct 339 ATCCGGAGCCGCACTCGTCGCTGTCGCCGTTTTCCTCATCGGTTACGCTGCGGATTTCGG 398
Query 452 CCACAGCATGGGAGACAAAATCGACAAAC-CTGTCAAGA-TGCGAGCCGTTGTTATCTTC 509
| | |||||||| ||| | || || || || | | ||||| | | ||||||
Sbjct 399 TTATAAAATGGGAGATAAACTTGA-GGACAAGGT-AAAAGTTCGAGCTATAGGGATCTTC 456
Query 510 GCTCTCGGGTTCTGGATCCTTGACGTGGCTAACAACA-CTCTCCAAGGACCATGCCGTGC 568
|||||||||||||||||||| ||||| || ||||||| || | |||||||| ||||||||
Sbjct 457 GCTCTCGGGTTCTGGATCCTCGACGTTGCCAACAACACCT-TACAAGGACCTTGCCGTGC 515
Query 569 TTTTCTT-G-GTGATTTAGCAGCTGGAGACGCTCAGAAAACGCGA-ACGGCAAACGCGTT 625
|||||| | | |||||||| || || |||||| ||| ||||||| | ||||| |||||
Sbjct 516 -TTTCTTAGCG-GATTTAGCCGCCGGTGACGCTAAGAGAACGCGAGTC-GCAAATGCGTT 572
Query 626 TTTCTCTTTCTTCATGGCCGTTGGAAACGTTTTGGGATATGCGGCAGGATCGTACACTAA 685
||||||||| || ||||| |||||||||||||||||||| ||||| |||||||||||| |
Sbjct 573 TTTCTCTTTTTTTATGGCGGTTGGAAACGTTTTGGGATACGCGGCTGGATCGTACACTCA 632
Query 686 CC-TCTACAAGATCTTCCCTTTCACAATGACTAAAGCGTGCGACATATATTGCGCAAATC 744
|| || ||||||| || || ||||||||||| ||||| ||||| || |||||||| ||||
Sbjct 633 CCTTC-ACAAGATGTTTCCGTTCACAATGACAAAAGCTTGCGATATCTATTGCGCGAATC 691
Query 745 TCAAGAGTTGTTTCTTCCTT-TCCATCACTCTCCTCCT-AGTCGTCACCATCATAG-CTC 801
|||||| ||||||||| ||| ||||||||||||||||| | |||||||| ||| | |||
Sbjct 692 TCAAGACTTGTTTCTT-CTTATCCATCACTCTCCTCCTCA-TCGTCACCGTCA-CGTCTC 748
Query 802 TATGGTACGTGGAAGACAAGCAATGGTCGCCTAAG--GCAG-ACTCCGAC-A--ACGAGA 855
| |||||||| ||||||| |||||||| || | || | |||||||| | ||||||
Sbjct 749 TTTGGTACGTTAAAGACAAACAATGGTCTCCGCCGCCGCGGAACTCCGACGACGACGAGA 808
Query 856 A-AACTC---CGTT-C----TTCGGTGAGATCTTTGGAGCTTTCAAG-GTAATGAAACGT 905
| | ||| |||| | |||||||| ||||||||||||||| || || |||||||||
Sbjct 809 AGACCTCAAGCGTTCCTTTGTTCGGTGAAATCTTTGGAGCTTTC-AGAGTCATGAAACGT 867
Query 906 CCAATGTGGATGCTACTAATCGTCACGGCCTTGAACTGGATCGCATGGTTCCCTTTTCTT 965
|| ||||||||||| ||||||||||||||||| ||||||||||| |||||||| ||||||
Sbjct 868 CCCATGTGGATGCTTCTAATCGTCACGGCCTTAAACTGGATCGCTTGGTTCCCATTTCTT 927
Query 966 TTATACGATACTGATTGGATGGGTCGTGAAGTGTATGGTGGAGACTCAAAAGGAGATGAC 1025
|| | |||||||||||||||||||||||||||||| |||||||| ||| | ||| ||||
Sbjct 928 TTGTTCGATACTGATTGGATGGGTCGTGAAGTGTACGGTGGAGATTCAGATGGAAATGA- 986
Query 1026 AAAAT-GAAGAAACTATACAACCAAGGAATTCA-TGTTGGTGC-ATTGGGATTGATGCTT 1082
| || |||||||||||||| || ||| | || | | ||||| || |||||||||| ||
Sbjct 987 ACGATCGAAGAAACTATACAGCCTTGGAGTCCAATCT-GGTGCCAT-GGGATTGATGTTT 1044
Query 1083 AACTCTATCGTTCTTGGAGTCATGTCACTTGGTATTGAA-GGTATTAGTAGGAAGA-TGG 1140
|| ||||| |||||||| |||||||||||||| ||||| || ||| || |||| | | |
Sbjct 1045 AATTCTATAGTTCTTGGTTTCATGTCACTTGGTGTTGAATGG-ATTGGTCGGAA-ACTAG 1102
Query 1141 GAGGAGCTAAAAGGCTTTGGGGAGCTGTGAATATT-ATTCTCGCCG-TGTGTTTGGCAAT 1198
||||||||||| ||||||||||| ||||||| || || ||||||| || ||||||| ||
Sbjct 1103 GAGGAGCTAAACGGCTTTGGGGAATTGTGAAT-TTCATCCTCGCCGCTG-GTTTGGCCAT 1160
Query 1199 GACGGTTTTGGTTACTAAAA-AGGCGGAGGAGCACCGGAGAATCGCCGGTCCAATGGCCC 1257
||||||| | ||| | ||| || || |||| ||||||| || ||||||| | | |||
Sbjct 1161 GACGGTTCTCGTTTCGAAATTAGCCG-AGGATCACCGGAAAACCGCCGGTGCTTTAGCCG 1219
Query 1258 TTCCTACC-GATGGCATCAGAGCTGGAGCATTGACTCTCTTTGCTCTTCTTGGAATTCCT 1316
|| | | | ||| || | ||| ||||| || | |||||||||| ||||||| || ||
Sbjct 1220 GACCGAGCAG-TGGTATTAAAGCAGGAGCTTTAAGTCTCTTTGCTGTTCTTGGTATCCCA 1278
Query 1317 CTT-GCTATTACATTCAGTATTCCGTTCGCACTAGCTTCTATAATATCAAGCAGCTCCGG 1375
|| |||||||| || |||| |||||| || ||||| || ||| | |||||| |||||||
Sbjct 1279 -TTAGCTATTACTTTTAGTACTCCGTTTGCTCTAGCGTCCATATTCTCAAGCTGCTCCGG 1337
Query 1376 CGCCGGTCAAAGACTTTCTCTAGGAGTTTTAAACATGGCAATTGTCATACCACAAATGAT 1435
|| || ||| | |||||| ||||||||||||| |||| ||||| ||||||||||||||
Sbjct 1338 TGCAGGCCAAGGGCTTTCTTTAGGAGTTTTAAATTTGGCGATTGTGATACCACAAATGAT 1397
Query 1436 TGTATCGTTTGGAGTTGGTCCTATTGATGCGTTATTTGGAGATGGAAACTTACCAG-GAT 1494
||||| |||||| ||| ||| |||| || | || || | |||||||||||| | | |
Sbjct 1398 AGTATCACTTGGAGGTGGACCTTTTGACGCCCTGTTCGGCGGTGGAAACTTACCGGCG-T 1456
Query 1495 TTGTGGTCGGAGCTATTGCAGCGGC 1519
|| | || | ||| |||||||||||
Sbjct 1457 TTATCGTTGCAGCAATTGCAGCGGC 1481
> Ahg319456 jgi|Araly1|319456|fgenesh1_pm.C_scaffold_3002472
Length=1230
Score = 800 bits (433), Expect = 0.0
Identities = 480/503 (95%), Gaps = 2/503 (0%)
Strand=Plus/Plus
Query 499 TTGTTATCTTCGCTCTCGGGTTCTGGATCCTTGACGTGGCTAACAACACTCTCCAAGGAC 558
|||||||||||||| |||| ||||||||||||||||||||||||||||| ||||||||||
Sbjct 305 TTGTTATCTTCGCTTTCGGTTTCTGGATCCTTGACGTGGCTAACAACACACTCCAAGGAC 364
Query 559 CATGCCGTGCTTTTCTTGGTGATTTAGCAGCTGGAGACGCTCAGAAAACGCGAACGGCAA 618
| ||||| ||||| |||||||||||||| |||||||||||| ||||||||||||| ||||
Sbjct 365 CTTGCCGCGCTTTCCTTGGTGATTTAGCCGCTGGAGACGCTAAGAAAACGCGAACAGCAA 424
Query 619 ACGCGTTTTTCTCTTTCTTCATGGCCGTTGGAAACGTTTTGGGATATGCGGCAGGATCGT 678
|||||||||||||||| ||||||||||||||||||||||||||||| ||||| |||||||
Sbjct 425 ACGCGTTTTTCTCTTTTTTCATGGCCGTTGGAAACGTTTTGGGATACGCGGCCGGATCGT 484
Query 679 ACACTAACCTCTACAAGATCTTCCCTTTCACAATGACTAAAGCGTGCGACATATATTGCG 738
||||||||||| ||||||||||||||||||||||||||||||| |||||||| |||||||
Sbjct 485 ACACTAACCTCCACAAGATCTTCCCTTTCACAATGACTAAAGCATGCGACATTTATTGCG 544
Query 739 CAAATCTCAAGAGTTGTTTCTTCCTTTCCATCACTCTCCTCCTAGTCGTCACCATCATAG 798
||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||
Sbjct 545 CAAATCTCAAGAGTTGTTTCTTCATTTCCATCACTCTTCTCCTAGTCGTCACCATCATAG 604
Query 799 CTCTAT-GGTACGTGGAAGACAAGCAATGGTCGCCTAAGGCAGACTCCGACAACGAGAAA 857
|||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 605 CTCT-TCGGTACGTGGAAGACAAGCAATGGTCGCCTAAGGCAGACTCCGACAACGAGAAA 663
Query 858 ACTCCGTTCTTCGGTGAGATCTTTGGAGCTTTCAAGGTAATGAAACGTCCAATGTGGATG 917
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 664 ACTCCGTTCTTCGGTGAGATCTTTGGAGCTTTCAAGGTGATGAAACGTCCAATGTGGATG 723
Query 918 CTACTAATCGTCACGGCCTTGAACTGGATCGCATGGTTCCCTTTTCTTTTATACGATACT 977
|||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 724 TTACTAATCCTCACGGCCTTGAACTGGATCGCATGGTTCCCTTTTCTTTTATATGATACT 783
Query 978 GATTGGATGGGTCGTGAAGTGTA 1000
|||||||||||||||||||||||
Sbjct 784 GATTGGATGGGTCGTGAAGTGTA 806
Score = 623 bits (337), Expect = 1e-177
Identities = 401/430 (93%), Gaps = 12/430 (3%)
Strand=Plus/Plus
Query 1125 ATTAGTAGGAAGATGGGAGGAGCTAAAAGGCTTTGGGGAGCTGTGAATATTATTCTCGCC 1184
||||||||||||||||||||||||||||||||||||||||||||||||| || |||||
Sbjct 811 ATTAGTAGGAAGATGGGAGGAGCTAAAAGGCTTTGGGGAGCTGTGAATACCATCCTCGCG 870
Query 1185 GTGTGTTTGGCAATGACGGTTTTGGTTACTAAAAAGGCGGAGGAGCACCGGAGAATCGCC 1244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 871 GTGTGTTTGGCAATGACGGTTTTGGTTACTAAAAAGGCGGAGGAGCACCGGAGAATCGCC 930
Query 1245 GGTCCAATGGCCCTTCCTACCGATGGCATCAGAGCTGGAGCATTGACTCTCTTTGCTCTT 1304
||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 931 GGTCCGATGGCCCTTCCTACTGATGGCATCAGAGCTGGAGCATTGACTCTCTTTGCTCTT 990
Query 1305 CTTGGAATTCCTCTTGCTATTACATTCAGTATTCCGTTCGCACTAGCTTCTATAATATCA 1364
|||||||||||||||||||||||||||||||||||||||||||||||||| || || |||
Sbjct 991 CTTGGAATTCCTCTTGCTATTACATTCAGTATTCCGTTCGCACTAGCTTCCATTATCTCA 1050
Query 1365 AGCAGCTCCGGCGCCGGTCAAAGACTTTCTCTAGGAGTTTTAAACATGGCAATTGTCATA 1424
||||||||||||||||| ||| | | |||||||||||||||||| || |||
Sbjct 1051 AGCAGCTCCGGCGCCGGCCAA-G----------G-AGTTTTAAACATGGCAATAGTGATA 1098
Query 1425 CCACAAATGATTGTATCGTTTGGAGTTGGTCCTATTGATGCGTTATTTGGAGATGGAAAC 1484
||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1099 CCACAAATGGTTGTATCGTTTGGAGTTGGTCCTATTGATGCGTTATTTGGAGGTGGAAAC 1158
Query 1485 TTACCAGGATTTGTGGTCGGAGCTATTGCAGCGGCAGTCAGCAGTATTGTGGCatttacc 1544
|||||||||||||||||||||||||||||||| ||| |||||||| ||||||||||||||
Sbjct 1159 TTACCAGGATTTGTGGTCGGAGCTATTGCAGCAGCAATCAGCAGTGTTGTGGCATTTACC 1218
Query 1545 gttttacctt 1554
||||||||||
Sbjct 1219 GTTTTACCTT 1228
> Ahg925866 jgi|Araly1|925866|scaffold_201427.1
Length=240
Score = 283 bits (153), Expect = 2e-75
Identities = 213/241 (88%), Gaps = 7/241 (3%)
Strand=Plus/Plus
Query 60 TCTAAGACAAGGGTGAAGAAGATGAGTGACCTCCAAGCAAACAAAGATGAGACGACTGTG 119
|||||||||| |||||||||||||||||||||||||||||| ||||||| | || || |
Sbjct 2 TCTAAGACAA-GGTGAAGAAGATGAGTGACCTCCAAGCAAAAAAAGATGTGGCGGTTGGG 60
Query 120 GATAGACAGTCTTC--C-TCGTCGGTGGATC-TTGATGGGCCATCTCCGCTGAGAAAGAT 175
|||||||||||||| | |||||| ||| || ||||||||||||| ||||| ||||||||
Sbjct 61 GATAGACAGTCTTCTGCCTCGTCGATGG-TCCTTGATGGGCCATCGCCGCTAAGAAAGAT 119
Query 176 GATATCGGTGGCTTCTATTGCTGCCGGTATTCAGTTTGGTTGGGCTCTTCAACTGTCTCT 235
|||||||||||||||||| || |||||||||||||||||||||| |||||| | |||||
Sbjct 120 GATATCGGTGGCTTCTATCGCCGCCGGTATTCAGTTTGGTTGGGTTCTTCAGTTATCTCT 179
Query 236 GCTTACTCCATACGTGCAGCTTCTTGGAGTCCC-ACACAAATGGCCATCTTTCATTTGGC 294
||| ||||||||||| |||||||| |||||||| ||| |||||| |||||||||| ||||
Sbjct 180 GCTAACTCCATACGTTCAGCTTCTCGGAGTCCCCACATAAATGGTCATCTTTCATATGGC 239
Query 295 T 295
|
Sbjct 240 T 240
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 60487309060
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5