BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G66580.1 Length=882 Score E Sequences producing significant alignments: (Bits) Value Ahg476107 jgi|Araly1|476107|fgenesh2_kg.2__1237__AT1G66580.1 1251 0.0 Ahg921543 jgi|Araly1|921543|scaffold_102824.1 833 0.0 Ahg920320 jgi|Araly1|920320|scaffold_101601.1 824 0.0 > Ahg476107 jgi|Araly1|476107|fgenesh2_kg.2__1237__AT1G66580.1 Length=825 Score = 1251 bits (677), Expect = 0.0 Identities = 778/827 (94%), Gaps = 6/827 (1%) Strand=Plus/Plus Query 1 AATTTCTAGGGTTTTGCAAAACCAACACCGAA-G-ATCCAACACGATGGGACGAAGACCT 58 ||||||||||||||||||||||||||| | || | |||||||||||||||||||||||| Sbjct 1 AATTTCTAGGGTTTTGCAAAACCAACATCAAACGAATCCAACACGATGGGACGAAGACCA 60 Query 59 GCGAGATGTTACCGTCAGATTAAGGGAAAGCCATACCCGAAATCACGATACTGTCGTGGT 118 ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 61 GCGAGGTGTTACCGTCAGATTAAGGGAAAGCCATACCCGAAATCACGATACTGTCGTGGA 120 Query 119 GTGCCAGATCCCAAAATCAGGATCTACGATGTTGGTATGAAGAGGAAAGGTGTTGATGAG 178 || |||||||| ||||||||||| |||||||| ||||||||||||||||| ||||||||| Sbjct 121 GTTCCAGATCCAAAAATCAGGATTTACGATGTCGGTATGAAGAGGAAAGGAGTTGATGAG 180 Query 179 TTTCCATTCTGTGTTCATTTGGTTTCATGGGAGAAAGAGAATGTGTCAAGTGAAGCACTT 238 |||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||| Sbjct 181 TTTCCATTCTGTGTTCATTTGGTTTCATGGGAGAAAGAGAATGTTTCAAGTGAAGCTCTT 240 Query 239 GAAGCAGCACGTATTGCTTGCAACAAGTATATGGTGAAATCTGCTGGGAAAGATGCTTTT 298 ||||| |||||||||||||| |||||||| ||||| ||||||||||| |||||||| || Sbjct 241 GAAGCTGCACGTATTGCTTGTAACAAGTACATGGTTAAATCTGCTGGTAAAGATGCGTTC 300 Query 299 CATTTGAGGATTAGGGTTCATCCTTTCCATGTTCT-CAGGATTAACAAGATGCTTTCGTG 357 ||| | |||||||||||||||| ||||||||| | | | || ||||||||||||||||| Sbjct 301 CATCTCCGGATTAGGGTTCATCCGTTCCATGTTTTGC-GAATCAACAAGATGCTTTCGTG 359 Query 358 TGCTGGAGCTGATAGGCTTCAGACTGGAATGAGAGGTGCTTTTGGTAAAGCTCTTGGTAC 417 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 360 TGCTGGAGCTGATAGGCTTCAGACTGGAATGAGAGGTGCTTTTGGTAAAGCTCTTGGTAC 419 Query 418 TTGTGCTAGAGTTGCGATTGGACAGGTTCTTTTGTCTGTTAGGTGTAAGGATAATCATGG 477 |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 420 TTGTGCTAGAGTTGCGATCGGACAGGTTCTTTTGTCTGTTAGGTGTAAGGATAATCATGG 479 Query 478 AGTTCATGCTCAGGAAGCTCTTCGTAGAGCTAAGTTTAAGTTCCCTGGTCGTCAAAAGAT 537 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 480 AGTTCATGCTCAGGAAGCTCTTCGTAGAGCTAAGTTTAAGTTCCCTGGTCGTCAAAAGAT 539 Query 538 CATTGTTAGCAGGAAATGGGGATTCACTAAATTCAACCGTGCTGAGTACACGAAGCTGAG 597 ||||||||||||||||||||||||||| ||||||||||||||||||||||||||| | || Sbjct 540 CATTGTTAGCAGGAAATGGGGATTCACCAAATTCAACCGTGCTGAGTACACGAAGTTAAG 599 Query 598 AGCGATGAAGAGGATTGTGCCTGATGGTGTCAATGCTAAGTTTCTATCAAACCATGGTCC 657 |||||||||||||||||| |||||||||||||||||||||||||||||||||||||| || Sbjct 600 AGCGATGAAGAGGATTGTTCCTGATGGTGTCAATGCTAAGTTTCTATCAAACCATGGGCC 659 Query 658 ATTGGCTAACCGTCAACCTGGAAGTGCCTTCATATCAGCCACTAGCGAATAAGAATGAAG 717 |||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||| Sbjct 660 ATTGGCTAACCGTCAACCTGGAAGTGCCTTCATATCAGCCACGAGCGAATAGGAATGAAG 719 Query 718 AAGATGATGATGATTTGTGGTTGTAGAACCGATAATGTAGTTTCTGCTC-TTTTCTGTTT 776 |||||| || |||||||||||||||||||||||||| |||||||| | |||| ||||| Sbjct 720 AAGATGTTGGTGATTTGTGGTTGTAGAACCGATAATCTAGTTTCT-CAAGTTTTATGTTT 778 Query 777 CAATTTTATTGTAACAGTTGTAGACAAGGATCCTCGTATGATTCCAA 823 || ||||||||||||||||| |||||||||||| ||||||||||||| Sbjct 779 CACTTTTATTGTAACAGTTGAAGACAAGGATCCCCGTATGATTCCAA 825 > Ahg921543 jgi|Araly1|921543|scaffold_102824.1 Length=707 Score = 833 bits (451), Expect = 0.0 Identities = 595/665 (89%), Gaps = 8/665 (1%) Strand=Plus/Plus Query 36 CCAACACGATGGGACGAAGACCTGCGAGATGTTACCGTCAGATTAAGGGAAAGCCATACC 95 ||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 14 CCAACGCGATGGGGCGAAGACCTGCGAGATGTTACCGTCAGATTAAGGGAAAGCCATACC 73 Query 96 CGAAATCACGATACTGTCGTGGTGTGCCAGATCCCAAA-ATCAGGATCTACGATGTTGGT 154 | |||||| |||||||||||||||| || ||| ||||| |||||||| |||||||||||| Sbjct 74 CAAAATCAAGATACTGTCGTGGTGTTCCCGAT-CCAAAGATCAGGATTTACGATGTTGGT 132 Query 155 ATGAAGAGGAAAGGTGTTGATGAGTTTCCATT-CTGTGTTCATTTGGTTTCATGGGAGAA 213 |||||||||||||| ||||||||| |||| || |||||||||||| |||||||||||||| Sbjct 133 ATGAAGAGGAAAGGAGTTGATGAG-TTCCCTTACTGTGTTCATTTAGTTTCATGGGAGAA 191 Query 214 AGAGAATGTGTCAAGTGAAGCACTTGAAGCAGCACGTATTGCTTGCAACAAGTATATGGT 273 ||||||||| ||||||||||| |||||||| || ||||||||||| |||||||| ||||| Sbjct 192 AGAGAATGTTTCAAGTGAAGCTCTTGAAGCTGCTCGTATTGCTTGTAACAAGTACATGGT 251 Query 274 GAAATCTGCTGGGAAAGATGCTTTTCATTTGAGGATTAGGGTTCATCCTTTCCATGTTCT 333 ||||||||| |||||||||||||| ||| | | ||||| |||||||||||||||||||| Sbjct 252 GAAATCTGCGGGGAAAGATGCTTTCCATCTCCGTATTAGAGTTCATCCTTTCCATGTTCT 311 Query 334 CAGGATTAACAAGATGCTTTCGTGTGCTGGAGCTGATAGGCTTCAGACTGGAATGAGAGG 393 |||||||| ||||||||||| ||||||||||||||||| ||||||||||| |||||||| Sbjct 312 TAGGATTAATAAGATGCTTTCTTGTGCTGGAGCTGATAGACTTCAGACTGGTATGAGAGG 371 Query 394 TGCTTTTGGTAAAGCTCTTGGTACTTGTGCTAGAGTTGCGATTGGACAGGTTCTTTTGTC 453 ||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||| Sbjct 372 TGCTTTTGGTAAAGCTCTTGGTACTTGTGCTAGAGTTGCTATCGGACAGGTTCTTTTGTC 431 Query 454 TGTTAGGTGTAAGGATAATCATGGAGTTCATGCTCAGGAAGCTCTTCGTAGAGCTAAGTT 513 ||| || || || ||| ||||||| |||||||||||| ||||||||| | |||||||| Sbjct 432 TGTGAGATGCAAAGATGCTCATGGACATCATGCTCAGGAGGCTCTTCGTCGTGCTAAGTT 491 Query 514 TAAGTTCCCTGGTCGTCAAAAGATCATTGTTAGCAGGAAATGGGGATTCACTAAATTCAA 573 ||||||||||||||||||||||||||||||||||||||||||||||||||| || || || Sbjct 492 TAAGTTCCCTGGTCGTCAAAAGATCATTGTTAGCAGGAAATGGGGATTCACCAAGTTTAA 551 Query 574 CCGTGCTGAGTACACGAAGCTGAGAGC--GATGAAGAGGATTGTGCCTGATGGTGTCAAT 631 ||||||||| ||||| ||||| || || || |||| ||||||| |||||||||||||| Sbjct 552 CCGTGCTGATTACACAAAGCTAAG-GCAAGA-GAAGCGGATTGTCCCTGATGGTGTCAAC 609 Query 632 GCTAAGTTTCTATCAAACCATGGTCCATTGGCTAACCGTCAACCTGGAAGTGCCTTCATA 691 || ||||| ||||| |||||||| |||||||||||||| || |||||||| ||| | Sbjct 610 GCCAAGTTCCTATCTTGCCATGGTCTGTTGGCTAACCGTCAGCCCGGAAGTGCGTTCTTG 669 Query 692 TCAGC 696 ||||| Sbjct 670 TCAGC 674 > Ahg920320 jgi|Araly1|920320|scaffold_101601.1 Length=736 Score = 824 bits (446), Expect = 0.0 Identities = 582/648 (90%), Gaps = 8/648 (1%) Strand=Plus/Plus Query 44 ATGGGACGAAGACCTGCGAGATGTTACCGTCAGATTAAGGGAAAGCCATACCCGAAATCA 103 |||||| ||||||||||||| |||||||||||||| ||||| ||||||||||| ||||| Sbjct 49 ATGGGAAGAAGACCTGCGAGGTGTTACCGTCAGATCAAGGGTAAGCCATACCCAAAATCT 108 Query 104 CGATACTGTCGTGGTGTGCCAGATCCCAAAATCAGGATCTACGATGTTGGTATGAAGAGG 163 |||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||| Sbjct 109 CGATACTGTCGTGGTGTGCCAGATCCAAAAATCAGGATCTACGATGTTGGAATGAAGAGG 168 Query 164 AAAGGTGTTGATGAGTTTCCATTCTGTGTTCATTTGGTTTCATGGGAGAAAGAGAATGTG 223 |||||||||||||| || ||||||||||| |||||||| ||||||||||| ||||||||| Sbjct 169 AAAGGTGTTGATGAATTCCCATTCTGTGTCCATTTGGTATCATGGGAGAAGGAGAATGTG 228 Query 224 TCAAGTGAAGCACTTGAAGCAGCACGTATTGCTTGCAACAAGTATATGGTGAAATCTGCT 283 || ||||||||||||||||| ||||||||||||||||||||||| |||||||||||||| Sbjct 229 TCCAGTGAAGCACTTGAAGCTGCACGTATTGCTTGCAACAAGTACATGGTGAAATCTGCA 288 Query 284 GGGAAAGATGCTTTTCATTTGAGGATTAGGGTTCATCCTTTCCATGTTCTCAGGATTAAC 343 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 289 GGGAAAGATGCTTTTCATTTGAGGATTAGGGTTCATCCTTTCCATGTTCTCAGGATTAAC 348 Query 344 AAGATGCTTTCGTGTGCTGGAGCTGATAGGCTTCAGACTGGAATGAGAGGTGCTTTTGGT 403 ||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 349 AAGATGCTTTCCTGTGCTGGAGCTGATAGGCTTCAGACTGGTATGAGAGGTGCTTTTGGT 408 Query 404 AAAGCTCTTGG-TACTTGTGCTAGAGTTGCGATTGGACAGGTTCTTTTGTCTGTTAGGTG 462 |||||| |||| |||||||||| | ||||| |||||||||||||||||||||||| | || Sbjct 409 AAAGCT-TTGGGTACTTGTGCTCGTGTTGCTATTGGACAGGTTCTTTTGTCTGTTCGTTG 467 Query 463 TAAGGATAATCATGGAGTTCATGCTCAGGAAGCTCTTCGTAGAGCTAAGTTTAAGTTCCC 522 |||||| |||||| ||||||||||| ||||||||| | |||||||| |||||||| Sbjct 468 CAAGGATGCTCATGGTCACCATGCTCAGGAGGCTCTTCGTCGTGCTAAGTTCAAGTTCCC 527 Query 523 TGGTCGTCAAAAGATCATTGTTAGCAGGAAATGGGGATTCACTAAATTCAACCGTGCTGA 582 ||||||||||||||| ||||| |||||||||||||| ||||| || || ||| | ||||| Sbjct 528 TGGTCGTCAAAAGATTATTGTCAGCAGGAAATGGGGTTTCACGAAGTTTAACAGAGCTGA 587 Query 583 GTACACGAAGCTGAGAGC--GATGAAGAG-GATTGTGCCTGATGGTGTCAATGCTAAGTT 639 | ||| ||| |||| || || |||| | | |||| |||||||||||||| |||||||| Sbjct 588 CTTCACCAAGTTGAG-GCAAGA-GAAGCGTG-TTGTTCCTGATGGTGTCAACGCTAAGTT 644 Query 640 TCTATCAAACCATGGTCCATTGGCTAACCGTCAACCTGGAAGTGCCTT 687 || ||| |||||| || |||||||||||||| || ||||||||||| Sbjct 645 CCTCTCATGCCATGGACCTTTGGCTAACCGTCAGCCGGGAAGTGCCTT 692 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 32671339869 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5