BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G66580.1
Length=882
Score E
Sequences producing significant alignments: (Bits) Value
Ahg476107 jgi|Araly1|476107|fgenesh2_kg.2__1237__AT1G66580.1 1251 0.0
Ahg921543 jgi|Araly1|921543|scaffold_102824.1 833 0.0
Ahg920320 jgi|Araly1|920320|scaffold_101601.1 824 0.0
> Ahg476107 jgi|Araly1|476107|fgenesh2_kg.2__1237__AT1G66580.1
Length=825
Score = 1251 bits (677), Expect = 0.0
Identities = 778/827 (94%), Gaps = 6/827 (1%)
Strand=Plus/Plus
Query 1 AATTTCTAGGGTTTTGCAAAACCAACACCGAA-G-ATCCAACACGATGGGACGAAGACCT 58
||||||||||||||||||||||||||| | || | ||||||||||||||||||||||||
Sbjct 1 AATTTCTAGGGTTTTGCAAAACCAACATCAAACGAATCCAACACGATGGGACGAAGACCA 60
Query 59 GCGAGATGTTACCGTCAGATTAAGGGAAAGCCATACCCGAAATCACGATACTGTCGTGGT 118
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 GCGAGGTGTTACCGTCAGATTAAGGGAAAGCCATACCCGAAATCACGATACTGTCGTGGA 120
Query 119 GTGCCAGATCCCAAAATCAGGATCTACGATGTTGGTATGAAGAGGAAAGGTGTTGATGAG 178
|| |||||||| ||||||||||| |||||||| ||||||||||||||||| |||||||||
Sbjct 121 GTTCCAGATCCAAAAATCAGGATTTACGATGTCGGTATGAAGAGGAAAGGAGTTGATGAG 180
Query 179 TTTCCATTCTGTGTTCATTTGGTTTCATGGGAGAAAGAGAATGTGTCAAGTGAAGCACTT 238
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||
Sbjct 181 TTTCCATTCTGTGTTCATTTGGTTTCATGGGAGAAAGAGAATGTTTCAAGTGAAGCTCTT 240
Query 239 GAAGCAGCACGTATTGCTTGCAACAAGTATATGGTGAAATCTGCTGGGAAAGATGCTTTT 298
||||| |||||||||||||| |||||||| ||||| ||||||||||| |||||||| ||
Sbjct 241 GAAGCTGCACGTATTGCTTGTAACAAGTACATGGTTAAATCTGCTGGTAAAGATGCGTTC 300
Query 299 CATTTGAGGATTAGGGTTCATCCTTTCCATGTTCT-CAGGATTAACAAGATGCTTTCGTG 357
||| | |||||||||||||||| ||||||||| | | | || |||||||||||||||||
Sbjct 301 CATCTCCGGATTAGGGTTCATCCGTTCCATGTTTTGC-GAATCAACAAGATGCTTTCGTG 359
Query 358 TGCTGGAGCTGATAGGCTTCAGACTGGAATGAGAGGTGCTTTTGGTAAAGCTCTTGGTAC 417
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 360 TGCTGGAGCTGATAGGCTTCAGACTGGAATGAGAGGTGCTTTTGGTAAAGCTCTTGGTAC 419
Query 418 TTGTGCTAGAGTTGCGATTGGACAGGTTCTTTTGTCTGTTAGGTGTAAGGATAATCATGG 477
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 420 TTGTGCTAGAGTTGCGATCGGACAGGTTCTTTTGTCTGTTAGGTGTAAGGATAATCATGG 479
Query 478 AGTTCATGCTCAGGAAGCTCTTCGTAGAGCTAAGTTTAAGTTCCCTGGTCGTCAAAAGAT 537
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 480 AGTTCATGCTCAGGAAGCTCTTCGTAGAGCTAAGTTTAAGTTCCCTGGTCGTCAAAAGAT 539
Query 538 CATTGTTAGCAGGAAATGGGGATTCACTAAATTCAACCGTGCTGAGTACACGAAGCTGAG 597
||||||||||||||||||||||||||| ||||||||||||||||||||||||||| | ||
Sbjct 540 CATTGTTAGCAGGAAATGGGGATTCACCAAATTCAACCGTGCTGAGTACACGAAGTTAAG 599
Query 598 AGCGATGAAGAGGATTGTGCCTGATGGTGTCAATGCTAAGTTTCTATCAAACCATGGTCC 657
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||
Sbjct 600 AGCGATGAAGAGGATTGTTCCTGATGGTGTCAATGCTAAGTTTCTATCAAACCATGGGCC 659
Query 658 ATTGGCTAACCGTCAACCTGGAAGTGCCTTCATATCAGCCACTAGCGAATAAGAATGAAG 717
|||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||
Sbjct 660 ATTGGCTAACCGTCAACCTGGAAGTGCCTTCATATCAGCCACGAGCGAATAGGAATGAAG 719
Query 718 AAGATGATGATGATTTGTGGTTGTAGAACCGATAATGTAGTTTCTGCTC-TTTTCTGTTT 776
|||||| || |||||||||||||||||||||||||| |||||||| | |||| |||||
Sbjct 720 AAGATGTTGGTGATTTGTGGTTGTAGAACCGATAATCTAGTTTCT-CAAGTTTTATGTTT 778
Query 777 CAATTTTATTGTAACAGTTGTAGACAAGGATCCTCGTATGATTCCAA 823
|| ||||||||||||||||| |||||||||||| |||||||||||||
Sbjct 779 CACTTTTATTGTAACAGTTGAAGACAAGGATCCCCGTATGATTCCAA 825
> Ahg921543 jgi|Araly1|921543|scaffold_102824.1
Length=707
Score = 833 bits (451), Expect = 0.0
Identities = 595/665 (89%), Gaps = 8/665 (1%)
Strand=Plus/Plus
Query 36 CCAACACGATGGGACGAAGACCTGCGAGATGTTACCGTCAGATTAAGGGAAAGCCATACC 95
||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 14 CCAACGCGATGGGGCGAAGACCTGCGAGATGTTACCGTCAGATTAAGGGAAAGCCATACC 73
Query 96 CGAAATCACGATACTGTCGTGGTGTGCCAGATCCCAAA-ATCAGGATCTACGATGTTGGT 154
| |||||| |||||||||||||||| || ||| ||||| |||||||| ||||||||||||
Sbjct 74 CAAAATCAAGATACTGTCGTGGTGTTCCCGAT-CCAAAGATCAGGATTTACGATGTTGGT 132
Query 155 ATGAAGAGGAAAGGTGTTGATGAGTTTCCATT-CTGTGTTCATTTGGTTTCATGGGAGAA 213
|||||||||||||| ||||||||| |||| || |||||||||||| ||||||||||||||
Sbjct 133 ATGAAGAGGAAAGGAGTTGATGAG-TTCCCTTACTGTGTTCATTTAGTTTCATGGGAGAA 191
Query 214 AGAGAATGTGTCAAGTGAAGCACTTGAAGCAGCACGTATTGCTTGCAACAAGTATATGGT 273
||||||||| ||||||||||| |||||||| || ||||||||||| |||||||| |||||
Sbjct 192 AGAGAATGTTTCAAGTGAAGCTCTTGAAGCTGCTCGTATTGCTTGTAACAAGTACATGGT 251
Query 274 GAAATCTGCTGGGAAAGATGCTTTTCATTTGAGGATTAGGGTTCATCCTTTCCATGTTCT 333
||||||||| |||||||||||||| ||| | | ||||| ||||||||||||||||||||
Sbjct 252 GAAATCTGCGGGGAAAGATGCTTTCCATCTCCGTATTAGAGTTCATCCTTTCCATGTTCT 311
Query 334 CAGGATTAACAAGATGCTTTCGTGTGCTGGAGCTGATAGGCTTCAGACTGGAATGAGAGG 393
|||||||| ||||||||||| ||||||||||||||||| ||||||||||| ||||||||
Sbjct 312 TAGGATTAATAAGATGCTTTCTTGTGCTGGAGCTGATAGACTTCAGACTGGTATGAGAGG 371
Query 394 TGCTTTTGGTAAAGCTCTTGGTACTTGTGCTAGAGTTGCGATTGGACAGGTTCTTTTGTC 453
||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||
Sbjct 372 TGCTTTTGGTAAAGCTCTTGGTACTTGTGCTAGAGTTGCTATCGGACAGGTTCTTTTGTC 431
Query 454 TGTTAGGTGTAAGGATAATCATGGAGTTCATGCTCAGGAAGCTCTTCGTAGAGCTAAGTT 513
||| || || || ||| ||||||| |||||||||||| ||||||||| | ||||||||
Sbjct 432 TGTGAGATGCAAAGATGCTCATGGACATCATGCTCAGGAGGCTCTTCGTCGTGCTAAGTT 491
Query 514 TAAGTTCCCTGGTCGTCAAAAGATCATTGTTAGCAGGAAATGGGGATTCACTAAATTCAA 573
||||||||||||||||||||||||||||||||||||||||||||||||||| || || ||
Sbjct 492 TAAGTTCCCTGGTCGTCAAAAGATCATTGTTAGCAGGAAATGGGGATTCACCAAGTTTAA 551
Query 574 CCGTGCTGAGTACACGAAGCTGAGAGC--GATGAAGAGGATTGTGCCTGATGGTGTCAAT 631
||||||||| ||||| ||||| || || || |||| ||||||| ||||||||||||||
Sbjct 552 CCGTGCTGATTACACAAAGCTAAG-GCAAGA-GAAGCGGATTGTCCCTGATGGTGTCAAC 609
Query 632 GCTAAGTTTCTATCAAACCATGGTCCATTGGCTAACCGTCAACCTGGAAGTGCCTTCATA 691
|| ||||| ||||| |||||||| |||||||||||||| || |||||||| ||| |
Sbjct 610 GCCAAGTTCCTATCTTGCCATGGTCTGTTGGCTAACCGTCAGCCCGGAAGTGCGTTCTTG 669
Query 692 TCAGC 696
|||||
Sbjct 670 TCAGC 674
> Ahg920320 jgi|Araly1|920320|scaffold_101601.1
Length=736
Score = 824 bits (446), Expect = 0.0
Identities = 582/648 (90%), Gaps = 8/648 (1%)
Strand=Plus/Plus
Query 44 ATGGGACGAAGACCTGCGAGATGTTACCGTCAGATTAAGGGAAAGCCATACCCGAAATCA 103
|||||| ||||||||||||| |||||||||||||| ||||| ||||||||||| |||||
Sbjct 49 ATGGGAAGAAGACCTGCGAGGTGTTACCGTCAGATCAAGGGTAAGCCATACCCAAAATCT 108
Query 104 CGATACTGTCGTGGTGTGCCAGATCCCAAAATCAGGATCTACGATGTTGGTATGAAGAGG 163
|||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||
Sbjct 109 CGATACTGTCGTGGTGTGCCAGATCCAAAAATCAGGATCTACGATGTTGGAATGAAGAGG 168
Query 164 AAAGGTGTTGATGAGTTTCCATTCTGTGTTCATTTGGTTTCATGGGAGAAAGAGAATGTG 223
|||||||||||||| || ||||||||||| |||||||| ||||||||||| |||||||||
Sbjct 169 AAAGGTGTTGATGAATTCCCATTCTGTGTCCATTTGGTATCATGGGAGAAGGAGAATGTG 228
Query 224 TCAAGTGAAGCACTTGAAGCAGCACGTATTGCTTGCAACAAGTATATGGTGAAATCTGCT 283
|| ||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||
Sbjct 229 TCCAGTGAAGCACTTGAAGCTGCACGTATTGCTTGCAACAAGTACATGGTGAAATCTGCA 288
Query 284 GGGAAAGATGCTTTTCATTTGAGGATTAGGGTTCATCCTTTCCATGTTCTCAGGATTAAC 343
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 289 GGGAAAGATGCTTTTCATTTGAGGATTAGGGTTCATCCTTTCCATGTTCTCAGGATTAAC 348
Query 344 AAGATGCTTTCGTGTGCTGGAGCTGATAGGCTTCAGACTGGAATGAGAGGTGCTTTTGGT 403
||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 349 AAGATGCTTTCCTGTGCTGGAGCTGATAGGCTTCAGACTGGTATGAGAGGTGCTTTTGGT 408
Query 404 AAAGCTCTTGG-TACTTGTGCTAGAGTTGCGATTGGACAGGTTCTTTTGTCTGTTAGGTG 462
|||||| |||| |||||||||| | ||||| |||||||||||||||||||||||| | ||
Sbjct 409 AAAGCT-TTGGGTACTTGTGCTCGTGTTGCTATTGGACAGGTTCTTTTGTCTGTTCGTTG 467
Query 463 TAAGGATAATCATGGAGTTCATGCTCAGGAAGCTCTTCGTAGAGCTAAGTTTAAGTTCCC 522
|||||| |||||| ||||||||||| ||||||||| | |||||||| ||||||||
Sbjct 468 CAAGGATGCTCATGGTCACCATGCTCAGGAGGCTCTTCGTCGTGCTAAGTTCAAGTTCCC 527
Query 523 TGGTCGTCAAAAGATCATTGTTAGCAGGAAATGGGGATTCACTAAATTCAACCGTGCTGA 582
||||||||||||||| ||||| |||||||||||||| ||||| || || ||| | |||||
Sbjct 528 TGGTCGTCAAAAGATTATTGTCAGCAGGAAATGGGGTTTCACGAAGTTTAACAGAGCTGA 587
Query 583 GTACACGAAGCTGAGAGC--GATGAAGAG-GATTGTGCCTGATGGTGTCAATGCTAAGTT 639
| ||| ||| |||| || || |||| | | |||| |||||||||||||| ||||||||
Sbjct 588 CTTCACCAAGTTGAG-GCAAGA-GAAGCGTG-TTGTTCCTGATGGTGTCAACGCTAAGTT 644
Query 640 TCTATCAAACCATGGTCCATTGGCTAACCGTCAACCTGGAAGTGCCTT 687
|| ||| |||||| || |||||||||||||| || |||||||||||
Sbjct 645 CCTCTCATGCCATGGACCTTTGGCTAACCGTCAGCCGGGAAGTGCCTT 692
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 32671339869
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5