BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT1G66610.1

Length=1101
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg925850 jgi|Araly1|925850|scaffold_201411.1                        150    2e-35


> Ahg925850 jgi|Araly1|925850|scaffold_201411.1
Length=548

 Score =  150 bits (81),  Expect = 2e-35
 Identities = 128/149 (86%), Gaps = 9/149 (6%)
 Strand=Plus/Plus

Query  857   CACCTTCTGCTCCAGGAGTTGGAAAGTTCTCCTATGAGCTATC--CTACTCGACGGCAGG  914
             |||||||||||||||||| |||| ||||||| |||||  ||||  || || ||||| |||
Sbjct  374   CACCTTCTGCTCCAGGAGCTGGAGAGTTCTCGTATGA--TATCTTCTGCTTGACGGAAGG  431

Query  915   TAACACTTTGACGTTTAGATCGTCGGAGATGAATCGGATTCAGAAAGTGAGCTTCCAAAC  974
             |||| || |||||||| |||||||| ||||||||  ||||||||||||||||||||||||
Sbjct  432   TAACGCTATGACGTTTGGATCGTCGAAGATGAATATGATTCAGAAAGTGAGCTTCCAAAC  491

Query  975   TCCGGAGAAGGACTTCATGTTTA-TTCCT  1002
             |||| | | |||||||||||| | |||||
Sbjct  492   TCCG-A-A-GGACTTCATGTT-AGTTCCT  516



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 41020258692


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5