BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G66660.2
Length=1263
Score E
Sequences producing significant alignments: (Bits) Value
Ahg925855 jgi|Araly1|925855|scaffold_201416.1 1177 0.0
> Ahg925855 jgi|Araly1|925855|scaffold_201416.1
Length=1070
Score = 1177 bits (637), Expect = 0.0
Identities = 943/1084 (87%), Gaps = 47/1084 (4%)
Strand=Plus/Plus
Query 18 CATCGGAGGAGATTTAGGA-ATGGCAAGATCTGGAGGAA-ACGACGGAC--ATA-GAGCC 72
|||||||||||||||| || ||||| | ||||||| ||| ||||||||| | | |||||
Sbjct 3 CATCGGAGGAGATTTA-GAGATGGCGATATCTGGA-GAAGACGACGGACGTAGAGGAGCC 60
Query 73 GGCGACAG-TCGTCTCTCGAAGAGGCAACGACTTCCTCCTTCTCCCGATGAATCTGAAGA 131
|||| | |||||||||||||||||||||||||||||| ||| |||||||||||||||
Sbjct 61 TTCGAC-GATCGTCTCTCGAAGAGGCAACGACTTCCTCC-TCT--CGATGAATCTGAAGA 116
Query 132 GGAATTAGACCCAGAGTTGTTCGAAGAGCCAAGTAATTTagaaggatacgaagatggaga 191
|||||||||| ||| ||||||||||| |||||| |||||| |||||||||||||||||
Sbjct 117 GGAATTAGACGAAGACTTGTTCGAAGATTCAAGTACTTTAGACGGATACGAAGATGGAGA 176
Query 192 attcgaagaagatgaagaagaattcgaagaagaagaagaagaattagaagaggaa-gaag 250
|||||||| | | ||||||| | | |||||||| | || | |||| | |
Sbjct 177 ATTCGAAG-A-A-GAAGAAG-A-T-------GAAGAAGATG--TT---ACTGGAATGGCG 219
Query 251 acgaagaag-aagaa-gaagaagaaAAC-GTTACTACTG-ATGAACAATCTGGAAGTCCT 306
|| || | || || |||| | | | || || | ||||||||||||||||||||
Sbjct 220 AC-AATTGGTAACAATTTCGAAG--ATCTGGTA--AC-GAATGAACAATCTGGAAGTCCT 273
Query 307 AAATCATCCCAACCGGTGAAGCTTCAGAGCTCAGATGTTCTCGATTGTCCTACTTGTTGT 366
|||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 274 AAATCATCCCAATCGGTGAAGCTACAGAGCTCAGATGTTCTCGATTGTCCTACTTGTTGT 333
Query 367 GAACCACTCAAGAGACCAATCTATCAGTGTAGTAATGGGCATCTAGCTTGTTCGTCATGC 426
|| |||||||||||||||||||||||||||||||||||||||||| |||||||||| |||
Sbjct 334 GAGCCACTCAAGAGACCAATCTATCAGTGTAGTAATGGGCATCTATCTTGTTCGTCGTGC 393
Query 427 TGCCAAAAATTGAACAAGAAATGCTCGTTCTGTAGATGTAACATCGGGGATATACGATGC 486
||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 394 TGCAAAAAATTGAACAAGAGATGCTCGTTCTGTAGATGTAACATCGGGGATATACGATGC 453
Query 487 AGAGCGATGGAGAAGGTTATCGAAGCATCTATAGTCCCGTGTCCAAATGCGAAACACGGG 546
|||||||||||||||||||| ||| ||||||| |||||||||||||| |||||| |||||
Sbjct 454 AGAGCGATGGAGAAGGTTATTGAATCATCTATTGTCCCGTGTCCAAACGCGAAATACGGG 513
Query 547 TGTAAAGAAACCACCACGTATTGTAATCAGTCAAGCCATGAGAAGGTTTGCAAGTTT--G 604
||||||||||| ||||||||||||||||| || |||||||| |||||||| |||| |
Sbjct 514 TGTAAAGAAACAACCACGTATTGTAATCAATCTAGCCATGACAAGGTTTGT--GTTTTCG 571
Query 605 TCCGATGTTCTTGCCCTGTATCGAACTGCAACTACGT-GAGTTCATACTCGAATCTCAAA 663
||| ||||||||||||||| | |||||||| ||||| | || ||||| ||||| |||||
Sbjct 572 CCCGTTGTTCTTGCCCTGTACCAAACTGCAATTACGTTGGGT-CATACGCGAATATCAAA 630
Query 664 AGCCATGCTTGTAGTACTGCACACGTTTGGGGTGAAGACGACATCCACTTCCAGTTAGTG 723
||||||||||||||||||||||||| ||||| ||| || ||| ||| | ||| ||| |||
Sbjct 631 AGCCATGCTTGTAGTACTGCACACGCTTGGGATGAGGATGACTTCCTCATCCCGTTTGTG 690
Query 724 ATTGACCGTCCTAGAATTTTTAACATGAACCTTGGTAGGAAGAAGACGGTTGTATTTAAG 783
||||| |||||| ||| |||||||||||||||||||||||||||| |||||| ||||||
Sbjct 691 TTTGACTGTCCTACAATCTTTAACATGAACCTTGGTAGGAAGAAGATGGTTGTTTTTAAG 750
Query 784 GAAGAGAAAGAGGGTGATTTGATTGTTGTTCAGGCTTTCAAGGGATTGGAAGGTGTTTAT 843
|||||||||||||||||||||||||| ||||||||||| ||||||||||||||||| |||
Sbjct 751 GAAGAGAAAGAGGGTGATTTGATTGTAGTTCAGGCTTTTAAGGGATTGGAAGGTGTGTAT 810
Query 844 GTGACTGTCAACCGTATTGCACATATGGCTCCGGGAATACGTGACTTGTCATGTAGTTTG 903
|||||||| |||||||||||||||||||||||||||||||| || || || |||||| ||
Sbjct 811 GTGACTGTAAACCGTATTGCACATATGGCTCCGGGAATACGGGAATTCTCGTGTAGTCTG 870
Query 904 GCTAAGCTCAACGAGTATAGCACACTAAGGAGTGGATCGTTGGTGAAGAAAATTCAGAAA 963
||||| |||||| |||||||||||||||||| |||||| ||||||||||||||||||||
Sbjct 871 GCTAAACTCAACCAGTATAGCACACTAAGGATTGGATCAATGGTGAAGAAAATTCAGAAA 930
Query 964 GTGAGAGAGAAAATGCATCTTGAAGATGACTTGATGTGGATACCGCCTAAAATGTTGAGC 1023
||||||||| ||||||||| |||||| ||| |||||||||| ||||||||||||||||||
Sbjct 931 GTGAGAGAGCAAATGCATCCTGAAGACGACGTGATGTGGATTCCGCCTAAAATGTTGAGC 990
Query 1024 GGTGACCACTGGAAGATGCAGATTTGCATTGCCTATGGATATAAATTTATTCACATCTGA 1083
| || |||||||||||| |||||||||| | |||||| ||||||| ||||||||| |||
Sbjct 991 AGCGAGCACTGGAAGATGGAGATTTGCATCGGCTATGGGTATAAATATATTCACATTTGA 1050
Query 1084 AGAA 1087
|||
Sbjct 1051 -GAA 1053
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 47196171246
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5