BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G66670.1
Length=1196
Score E
Sequences producing significant alignments: (Bits) Value
Ahg925857 jgi|Araly1|925857|scaffold_201418.1 1448 0.0
> Ahg925857 jgi|Araly1|925857|scaffold_201418.1
Length=972
Score = 1448 bits (784), Expect = 0.0
Identities = 897/952 (94%), Gaps = 5/952 (1%)
Strand=Plus/Plus
Query 56 AATGGAGATGAGTTTGCGTCTCGCTTCATCTTCAACCTCAAACCCAATTTGTCTACTAAA 115
|||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||
Sbjct 25 AATGGAGATGAGTTTGCGACTCGCTTCATCTTCAACCTCAAACCCAATTTGTCTAATAAA 84
Query 116 CCCTGGAAAAAACCTTAATTTCCCAATCCGAAACCATAGAATCCCTAAAACTTCGAAACC 175
|| |||||||| ||||||||||||||||||||||| |||||||||||||| |||||||
Sbjct 85 TCCAGGAAAAAATCTTAATTTCCCAATCCGAAACCAGAGAATCCCTAAAACAACGAAACC 144
Query 176 CTTTTGCGTTAGGTCTTCAATGAGCTTGTCTAAACCACCCAGACAAACCTTATCTAGTAA 235
|||||||||||||||||||||||||| ||| || ||||||||||||||||||||||||
Sbjct 145 CTTTTGCGTTAGGTCTTCAATGAGCTCATCT-AA--ACCCAGACAAACCTTATCTAGTAA 201
Query 236 CTGGGATGTATCTAGCTTCTCCATTGATTCCGTTGCTCAATCTCCTTCAAGACTCCCAAG 295
||||||||| |||||||||||| |||||||||||||||||||||||||| | || |||||
Sbjct 202 CTGGGATGTCTCTAGCTTCTCCGTTGATTCCGTTGCTCAATCTCCTTCACGGCTTCCAAG 261
Query 296 TTTCGAAGAACTCGATACCACCAACATGTTGCTCCGTCAAAGAATCGTCTTTTTGGGTTC 355
||||||||||||||| ||||| ||||||||||| ||||||||||||||||||||||||||
Sbjct 262 TTTCGAAGAACTCGACACCACAAACATGTTGCTTCGTCAAAGAATCGTCTTTTTGGGTTC 321
Query 356 TCAGGTTGATGATATGACGGCGGATTTGGTTATAAGTCAGCTATTGTTACTAGATGCTGA 415
|||||| ||||||||||| ||||||||||||||||||||||| ||||| |||||||||||
Sbjct 322 TCAGGTGGATGATATGACTGCGGATTTGGTTATAAGTCAGCTTTTGTTGCTAGATGCTGA 381
Query 416 GGACTCAGAAAGAGACATTACGCTTTTTATCAATTCACCCGGTGGATCTATTACTGCTGG 475
||||||||| |||||||||||||| ||||||||||| |||||||||||||||||||||||
Sbjct 382 GGACTCAGAGAGAGACATTACGCTGTTTATCAATTCGCCCGGTGGATCTATTACTGCTGG 441
Query 476 GATGGGAATATATGATGCAATGAAACAATGTAAGGCGGATGTATCTACTGTTTGCTTAGG 535
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 442 GATGGGAATATATGATGCAATGAAACAATGTAAGGCGGATGTATCGACTGTTTGCTTAGG 501
Query 536 GTTAGCTGCATCTATGGGTGCGTTTCTTCTTGCTTCTGGTTCAAAAGGGAAACGGTATTG 595
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 502 ACTAGCTGCATCTATGGGTGCGTTTCTCCTTGCTTCTGGTTCAAAAGGGAAACGGTATTG 561
Query 596 TATGCCTAACTCTAAAGTTATGATCCATCAGCCACTTGGTACTGCTGGAGGCAAAGCAAC 655
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 562 CATGCCTAACTCTAAAGTTATGATCCATCAGCCACTTGGTACCGCTGGAGGCAAAGCAAC 621
Query 656 GGAAATGAGCATACGTATAAGAGAAATGATGTACCACAAGATTAAACTTAACAAAATCTT 715
||||||||||||||| |||||||||||||||||||||||||||||||| ||||| |||||
Sbjct 622 GGAAATGAGCATACGCATAAGAGAAATGATGTACCACAAGATTAAACTAAACAAGATCTT 681
Query 716 CTCTAGAATCACTGGGAAGCCTGAATCAGAGATCGAAAGTGACACAGACCGTGATAACTT 775
|||||||||||| || ||||| ||||||||||||||| ||||||||||||||||||| ||
Sbjct 682 CTCTAGAATCACCGGAAAGCCCGAATCAGAGATCGAAGGTGACACAGACCGTGATAATTT 741
Query 776 CTTGAATCCATGGGAGGCGAAAGAATATGGTTTGATCGACGCTGTAATCGATGATGGGAA 835
||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 742 CTTGAATCCATGGGAAGCGAAAGAATATGGTTTGATCGATGCTGTAATCGATGATGGGAA 801
Query 836 ACCGGGACTAATCGCTCCAATTGGAGATGGTACTCCTCCTCCTAAAACCAAAGTCTGGGA 895
||| ||||||||||||||||| |||||||| ||||||||||| |||||||||||||||||
Sbjct 802 ACCAGGACTAATCGCTCCAATCGGAGATGGCACTCCTCCTCCGAAAACCAAAGTCTGGGA 861
Query 896 TCTTTGGAAAGTCGAAGGAACCAAGAAAGACAACACTAACTTGCCATCTGAGCGCTCCAT 955
|||||||||||| ||||||||||||||||||||||||||||||||||| |||||||| ||
Sbjct 862 TCTTTGGAAAGTTGAAGGAACCAAGAAAGACAACACTAACTTGCCATCCGAGCGCTCAAT 921
Query 956 GACACAGAATGGTTATGCCGCCATTGAATAGAACT-GTTGTTGCAGCGTTTA 1006
|||||||||||||||||| |||||||||||||||| || ||| |||||||||
Sbjct 922 GACACAGAATGGTTATGCTGCCATTGAATAGAACTTGT-GTTCCAGCGTTTA 972
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 44641935807
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5