BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G66680.1
Length=1438
Score E
Sequences producing significant alignments: (Bits) Value
Ahg475764 jgi|Araly1|475764|fgenesh2_kg.2__894__AT1G66680.1 2013 0.0
> Ahg475764 jgi|Araly1|475764|fgenesh2_kg.2__894__AT1G66680.1
Length=1315
Score = 2013 bits (1090), Expect = 0.0
Identities = 1232/1296 (95%), Gaps = 27/1296 (2%)
Strand=Plus/Plus
Query 78 TTTATTCTCTGTGGCGTT----GAATCTGCGATGGCGGGAATCAGATTGCTACCGGAAGA 133
||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 26 TTTTTTCTCTGTGGCGTTGAAGGAATCTGCGATGGCGGGAATCAGATTGCTACCGGAAGA 85
Query 134 ACCTGAGACGACTCCTCAACAACAAGCCAGAG---CCGCCGCCGCGGTGACAACGACAAC 190
|||||||||||||||||||||||||||||||| |||||||||||||||||||| ||
Sbjct 86 ACCTGAGACGACTCCTCAACAACAAGCCAGAGCCTCCGCCGCCGCGGTGACAACG---AC 142
Query 191 AACGGATAGTTTGGCTTCCGATGACGATCGATCTATCGCGGCGGATTCGTGGTCGATCAA 250
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 143 GACGGATAGTTTGGCTTCCGATGACGATCGATCTATTGCGGCGGATTCGTGGTCGATCAA 202
Query 251 AAGTGAGTATGGAAGCACTCTCGATGACGATCAACGTCACGCCGATGCCGCCGAGGCTCT 310
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 203 AAGCGAGTATGGAAGCACTCTCGATGACGATCAACGTCACGCCGATGCCGCCGAGGCTCT 262
Query 311 CTCGTCCGCTAACTTCCGTGTCTCTTCCGATTACAGTTCTGATAAGGAAGAGCCAGATGC 370
||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 263 CTCCTCCGCTAACTTCCGCGTCTCTTCCGATTACAGTTCTGATAAGGAAGAGCCAGATGC 322
Query 371 TGATGGAGGAGGTCAATCAATGCTTGGTCTTCAAAGCTATTGGGATGCAGCGTATTCCGA 430
|||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||
Sbjct 323 TGATGGAGGAGGTCAATCAATGCTTGGTCTTCTAAGCTATTGGGATGCTGCGTATTCCGA 382
Query 431 TGAGCTTACTAATTTCAGAGAGCATGGTCATGCTGGTGAAGTTTGGTTTGGAGATGATGT 490
|||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||
Sbjct 383 TGAGCTTACTAATTTCAGGGAGCATGGTCATGCTGGCGAAGTTTGGTTTGGAGATGATGT 442
Query 491 GATGGAGATTGTTACTTCTTGGACTAAAGACTTATGCGTTGAGATTTCTCA-AAGAAACA 549
|||||||||||||||||||||||||||||||||||||||||||||||||| || |||||
Sbjct 443 TATGGAGATTGTTACTTCTTGGACTAAAGACTTATGCGTTGAGATTTCTCAGAA-AAACA 501
Query 550 TGTCTGTTTCTGAAAACGATGTTACGACAGAGGTGAATGATCAGGCTGATAAGTATTTGT 609
||||||||||||| |||||||||||||| |||||||||||||||||||| ||||||||||
Sbjct 502 TGTCTGTTTCTGACAACGATGTTACGACGGAGGTGAATGATCAGGCTGAGAAGTATTTGT 561
Query 610 CTAGTTGGAATGTGCTTGATCTTGGTACTGGAAATGGCTTACTCCTTCATCAACTTGCTA 669
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 562 CTAGTTGGAATGTGCTTGATCTTGGTACTGGAAATGGCTTACTCCTTCATCAACTTGCTA 621
Query 670 AGGAAGGGTTCTCTGATTTAACCGGAACTGATTACAGTGACGGGGCTGTAGAACTCGCTC 729
||||||||||||||||||||||||| |||||||| ||||| || || |||||||||||||
Sbjct 622 AGGAAGGGTTCTCTGATTTAACCGGGACTGATTATAGTGAAGGTGCGGTAGAACTCGCTC 681
Query 730 AACATCTTTCCCAACGTGATGGCTTTCCAAATATCCGTTTCATGGTTGATGATATCCTTG 789
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 682 AACATCTTTCCCAACGTGATGGCTTTCCTAATATCCGTTTCATGGTTGATGATATCCTTG 741
Query 790 ACACAAAATTGGAACAGCAGTTCAAGCTGGTAATGGACAAAGGAACTTTAGATGCTATTG 849
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 742 ACACAAAATTGGAACAGCAGTTCAAGCTGGTAATGGACAAAGGAACTTTAGATGCTATTG 801
Query 850 GTTTGCATCCTGATGGCCCTGTCAAAAGAGTCATGTACTGGGATTCAGTGTCCAAGCTGG 909
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 802 GTTTGCATCCTGATGGCCCTGTCAAAAGAGTCATGTACTGGGATTCAGTGTCCAAGCTGG 861
Query 910 TTGCTCCTGGTGGAATATTGGTGATCACATCGTGTAACCACACAAAGGACGAACTGGTGG 969
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 862 TTGCTCCTGGTGGAATATTGGTCATCACATCGTGTAACCACACAAAGGACGAACTGGTGG 921
Query 970 AAGAAGTAGAGAATTTCAACATCAGAAAATCCAACTTATGTAGAGGAGATGGAAATGACG 1029
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 922 AAGAAGTAGAGAATTTCAACATCAGAAAATCCAACTTATGTAGAGGAGATGGAAATGACG 981
Query 1030 CAAACAATGTACTTTCCTCTGGCTCTGAAGCTGCAAGCAGAATTGATCAACCTCCGTTTG 1089
| | ||||| |||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 982 CTACCAATGCGCTTTCCTCGGGCTCTGAAGCTGCAAGCAGAATTGATCAACCTCCGTTTG 1041
Query 1090 AGTATCTCAGCCATGTTAGGACATACCCGACGTTCATGTTCAGTGGGTCTGTAGGATCGC 1149
||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1042 AGTATCTCAGCCACGTTAGGACATACCCGACGTTCATGTTTGGTGGGTCTGTAGGATCGC 1101
Query 1150 GTGTGGCAACGGTTGCTTTTCTGCGGAAGTGAGAACAAACCTGTTG--G-ATTTGTTTT- 1205
|||||||||| ||||||||||||||||||||||||||||||||||| | |||| ||||
Sbjct 1102 GTGTGGCAACTGTTGCTTTTCTGCGGAAGTGAGAACAAACCTGTTGATGGATTTTTTTTT 1161
Query 1206 ------AACATAATGCCCAGACCTTTTCTCTTCTTTT-TATGTTGGTGTCAAGCAAGACT 1258
|||||||||| ||||||||||||| |||||| ||||||||||||||||||||||
Sbjct 1162 TTGTTTAACATAATGCTCAGACCTTTTCTCATCTTTTATATGTTGGTGTCAAGCAAGACT 1221
Query 1259 GTTGATG-TGCTTTTGGGAGTTCTTAATAACCTCTAAAGTTCTTTT-AAGAGAAAACTGA 1316
||||||| |||||||||||| |||||||||||| |||| ||||||| || ||||||||||
Sbjct 1222 GTTGATGGTGCTTTTGGGAGCTCTTAATAACCTTTAAATTTCTTTTCAA-AGAAAACTGA 1280
Query 1317 TTTGGTCATATGTCAGTGttttttttctttcttttt 1352
||||||||||| |||||||||||||||||| |||||
Sbjct 1281 TTTGGTCATATATCAGTGTTTTTTTTCTTT-TTTTT 1315
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 53783425940
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5