BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G66700.1 Length=1299 Score E Sequences producing significant alignments: (Bits) Value Ahg475766 jgi|Araly1|475766|fgenesh2_kg.2__896__AT1G66700.1 1886 0.0 Ahg338902 jgi|Araly1|338902|fgenesh1_pg.C_scaffold_2001001 841 0.0 Ahg925862 jgi|Araly1|925862|scaffold_201423.1 562 2e-159 Ahg908199 jgi|Araly1|908199|Al_scaffold_0002_1280 388 4e-107 > Ahg475766 jgi|Araly1|475766|fgenesh2_kg.2__896__AT1G66700.1 Length=1277 Score = 1886 bits (1021), Expect = 0.0 Identities = 1197/1282 (93%), Gaps = 11/1282 (1%) Strand=Plus/Plus Query 1 ACTACTCTCATCATAAACCAAAGTATCAAACAATAAAAGATTTTTGAGAAAAA-AGAGAG 59 |||||||||||||||||||||||||| |||||| |||||| ||||||||||| |||||| Sbjct 1 ACTACTCTCATCATAAACCAAAGTATTAAACAAGAAAAGAAGTTTGAGAAAAAGAGAGAG 60 Query 60 AGAGATATCATGACTACTACTCCAGATTGGATCATGATTGGAGGAGACGGTCCTGAGAGT 119 ||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 61 AGAGAGATCATGACTACTACTCCAGATTGGATCATGATTGGAGGAGATGGTCCTGAGAGT 120 Query 120 TATAACCAACAATCCTCGTATCAGAGAGCATTGTTGGAAGC-GACAAAGGACAAGATGAC 178 || |||||||| ||||||||||||||||| ||||||||||| | |||||||||||||||| Sbjct 121 TACAACCAACAGTCCTCGTATCAGAGAGCGTTGTTGGAAGCTG-CAAAGGACAAGATGAC 179 Query 179 CAAGGCGATCTCAGCCAATCTCGACCTAGACTTGATTTCGAATCGCTTCATTGTAGCGGA 238 | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 180 CGAGGCGATCTCAGCCAATCTCGACCTAGACTTGATTTCGAATCGCTTCATTGTAGCGGA 239 Query 239 TTTCGGTTGTGCAAGTGGACCTAACACTTTTGTGGCAGTTCAAAACATAATAGATGCGGT 298 |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 240 TTTCGGTTGTGCGAGTGGACCTAACACTTTTGTGGCAGTTCAAAACATAATAGATGCGGT 299 Query 299 AGAAGAAAAGTACCGTAGAGAAACCGGACAAAACCCGGCA-GATAACATCGAGTTCCAAG 357 |||||||||||||||||||||||||||||||||||| | | ||||||||||||||||||| Sbjct 300 AGAAGAAAAGTACCGTAGAGAAACCGGACAAAACCCCG-ATGATAACATCGAGTTCCAAG 358 Query 358 TCCTCTTCAATGATTTCAGCCTCAATGATTTCAACACTCTCTTCCAGACACTTCCACCCG 417 |||| ||||| || |||||||| || ||||||||||||||||||||||||||||| || | Sbjct 359 TCCTATTCAACGACTTCAGCCTGAACGATTTCAACACTCTCTTCCAGACACTTCCTCCAG 418 Query 418 GAAGAAGATACTTCAGCGCTGGAGTTCCTGGTTCCTTCTTCGAACGTGTTCTTCCTAAGG 477 | |||| |||||| |||||||| ||||||||||||||||| |||||||||||||| |||| Sbjct 419 GGAGAAAATACTTTAGCGCTGGGGTTCCTGGTTCCTTCTTTGAACGTGTTCTTCCGAAGG 478 Query 478 AGAGTTTCCACATCGGAGTCATGAGTTACGCGTTCCATTTCACCTCCAAAATCCCCAAAG 537 |||||||||||||||||||||||||||| || |||||||||||||||||||||||||||| Sbjct 479 AGAGTTTCCACATCGGAGTCATGAGTTATGCATTCCATTTCACCTCCAAAATCCCCAAAG 538 Query 538 GGATTATGGACCGCGACTCTCCCTTGTGGAACAAAGACATGCAGTGCACGGGGTTCAACC 597 | || |||||||||||||||||||||||||||||||||||||| ||||| |||||||||| Sbjct 539 GAATCATGGACCGCGACTCTCCCTTGTGGAACAAAGACATGCAATGCACCGGGTTCAACC 598 Query 598 CCGCTGTCAAGAAAGCGTATCTTGACCAGTACTCTATCGACACCAAAATTCTTTTAGATG 657 | ||||||||||||||||| ||||| ||||||||||| ||||||||||||||||| |||| Sbjct 599 CAGCTGTCAAGAAAGCGTACCTTGATCAGTACTCTATTGACACCAAAATTCTTTTGGATG 658 Query 658 CTAGAGCTGAAGAGCTCGTGCCCGGGGGGTTGATGTTGCTTTTAGGATCGTGTCTAAGAG 717 ||||||||||||||||||| |||||||| |||||||||||||||||||| |||||||||| Sbjct 659 CTAGAGCTGAAGAGCTCGTACCCGGGGGATTGATGTTGCTTTTAGGATCTTGTCTAAGAG 718 Query 718 ACGGAGTTAAGATGTCCGAGACCCCTAAAGGAACTGTAATGGATTTTATTGGAGAATCTC 777 ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| | Sbjct 719 ACGGAGTTAAGATGTCCGAGACCCCTAAAGGAACTGTCATGGATTTTATTGGAGAATCAC 778 Query 778 TTAGCGATCTTGCTAAACAGGGTGTCACCGAGCAAGAGAAGGTGGACACTTTCAGAACCT 837 ||| ||||||||| |||||||||||||||||||||| ||||||||||| |||| ||||| Sbjct 779 TTATTGATCTTGCTCAACAGGGTGTCACCGAGCAAGAAAAGGTGGACACATTCAAAACCT 838 Query 838 CAATTTACTTTGCAGAACAAGGTGAGATAAGGCAAATCATTGAGGAGAATGGGAAGTTCA 897 |||||||||||||||| ||||| |||||||||||||||||||| |||||||||||||||| Sbjct 839 CAATTTACTTTGCAGAGCAAGGCGAGATAAGGCAAATCATTGAAGAGAATGGGAAGTTCA 898 Query 898 CAATCGAGGCTTTT-GAAGATATCATTCACGCTAAAAACGAGTTTCCTTTTGACCCCAAG 956 ||||||| |||||| || |||||||||||| |||| || |||||||| | ||||||||| Sbjct 899 CAATCGA-GCTTTTCGAGGATATCATTCACTCTAAGAATGAGTTTCCGCTAGACCCCAAG 957 Query 957 ACATTGGCCATCTCTTTCAAGGCCTTCTATGGTGCTTTCATTTCCGCACATTTTGGAGTC 1016 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 958 ACATTGGCCATCTCTTTCAAGGCCTTCTATGGTGCTTTCATTTCCGCACATTTTGGAGTC 1017 Query 1017 GAAGTCATGAGGAAAGCCTTTGAGCTTGTTGAGGTCAAGGCACGCGAACAGATTTCTCGC 1076 ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 1018 GAAGTCATGAGGAAAGCCTTTGAGCTTGTCGAGGTCAAGGCACGCGAACAGATTTCTCGC 1077 Query 1077 CTCCATAACT-CCAAACCCGGAATGCAGTACCTCATCGTGCTTCGCAAGAACTAAACCGT 1135 || ||||| | ||||| ||||||||||||||||||||||||||||||||||||| |||| Sbjct 1078 CTACATAA-TGCCAAAGACGGAATGCAGTACCTCATCGTGCTTCGCAAGAACTAATCCGT 1136 Query 1136 GATCCAAATATATTGTTATATGTGATTTCCTCCATTGTTGcttctcttctttcgtctatc 1195 |||| |||||||||| || ||||||||||||||||||||||||||||||||||||| ||| Sbjct 1137 GATCGAAATATATTGATA-ATGTGATTTCCTCCATTGTTGCTTCTCTTCTTTCGTCGATC 1195 Query 1196 ttatggtgctttgtcgtctctt-cttcttgttgttttgtcttAACGTCTTTGTATTCTCC 1254 | ||||||| ||||||||| || ||||||| |||||||||||| ||||||||| ||||| Sbjct 1196 TCATGGTGCATTGTCGTCTTTTTCTTCTTGCTGTTTTGTCTTAGTGTCTTTGTACTCTCC 1255 Query 1255 CCTATCCTACAAATGAATAAAA 1276 |||||||| ||||| ||||||| Sbjct 1256 CCTATCCTTCAAATTAATAAAA 1277 > Ahg338902 jgi|Araly1|338902|fgenesh1_pg.C_scaffold_2001001 Length=1059 Score = 841 bits (455), Expect = 0.0 Identities = 879/1080 (81%), Gaps = 43/1080 (4%) Strand=Plus/Plus Query 69 ATGACTACTACTCCAGATTGGATCATGATTGGAGGAGACGGTCCTGAGAGTTATAACCAA 128 ||| || |||||||||| ||| ||||| |||||||||| |||||||||||||| || || Sbjct 1 ATGTCTCCTACTCCAGAATGGGTCATGGTTGGAGGAGAAGGTCCTGAGAGTTACAAGCAG 60 Query 129 CAATCCTCGTATCAGAGAGCA-TTGTTGGAAGCGA-CAAAGGA-CAAGATGACCAAGGCG 185 || || ||||||||||||| | |||||| |||| | ||||||| || || | | || | Sbjct 61 CATTCTTCGTATCAGAGAG-ATTTGTTGAAAGC-AGCAAAGGATGAA-ATAAACGCGGTG 117 Query 186 ATCTCAGCCAATCTCGA-CCTAGACTTGATTTCGAATCGCTTCATTGTAGCGGATTTCGG 244 ||| |||| || ||| | ||| || |||||||||| ||| |||| ||| ||||||||||| Sbjct 118 ATCGCAGCGAACCTC-AGCCTCGATTTGATTTCGAGTCGGTTCAGTGTTGCGGATTTCGG 176 Query 245 TTGTGCAAGTGGACCTAACACTTTTGTGGCAGTTCAAAACATAATAGATGCGGTAGAAGA 304 |||||| |||||||||||||||||| ||||||| ||||||||||||||||| || ||||| Sbjct 177 TTGTGCGAGTGGACCTAACACTTTTATGGCAGTCCAAAACATAATAGATGCCGTGGAAGA 236 Query 305 AAAGTACCGTAGAGAAACCGGACAAAACCCGGCAGATAACATCGAGTTCCAAGTCCTCTT 364 ||||| | |||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 237 GAAGTATCTTAGAGAAACCGGACAAAACCCGGCGGATAACATCGAGTTCCAAGTCCTCTT 296 Query 365 CAATGATTTCAGCC-TCAATGATTTCAACACTCTCTTCCAGACACTTCCACCCG-GAAGA 422 ||| || || ||| | || ||||||||||||||||||||| |||||| | | | || Sbjct 297 CAACGACTTAAGCAAT-AACGATTTCAACACTCTCTTCCAGGGACTTCCTTC-GAGCAGG 354 Query 423 AGATACT-TCAGCGCTGGAGTTCCTGGTTCCTTCTTCGAACGTGTTCTTCCTAAGGAGAG 481 ||||||| | || ||||| || || |||||||||||||| ||||||||||||||| |||| Sbjct 355 AGATACTAT-AGTGCTGGCGTCCCCGGTTCCTTCTTCGACCGTGTTCTTCCTAAGCAGAG 413 Query 482 TTTCCACATCGGAGTCATGAGTTACGCGTTCCATTTCACCTCCAAAATCCCCAAAGGGAT 541 | ||||||| ||||| |||| |||||| || || |||||||||||||||||||||||||| Sbjct 414 TATCCACATAGGAGTTATGAATTACGCTTTTCAGTTCACCTCCAAAATCCCCAAAGGGAT 473 Query 542 -TATGGACCGCGACTCTCCCTTGTGGAACAAAGACATGCAGTGCACGGGGTTCAACCCCG 600 | | ||||| |||||||| ||||||||| |||||| || ||||| || |||||| | Sbjct 474 CTCCG-ACCGCAACTCTCCCATGTGGAACAGAGACATACATTGCACTGGCTTCAACAACA 532 Query 601 CTGTCAAGAAAGCGTATCTTGACCAGTACTCTATCGACACCAA-AATTCTTTTAGATGCT 659 ||||||||||||||| |||| ||| |||| ||||| |||| ||| | || |||||| Sbjct 533 AGGTCAAGAAAGCGTATTTTGATCAGGACTCGCTCGACTCCAAGAATA-TATTGGATGCT 591 Query 660 AGAGCTGAAGAGCTCGTGCCCGGGGGGTTGATGTTGCTTTTAGGATCGTGTCTAAGAGAC 719 |||||||||||||| | |||||||| || | |||||||||||||||||||||||||| Sbjct 592 CGAGCTGAAGAGCTCTTACCCGGGGGACTGTTATTGCTTTTAGGATCGTGTCTAAGAGAA 651 Query 720 GG-AGTTAAGATGTCCGAGACCCCTAAAGGAACT-GTAATGGATTTTATTGGAGAATCTC 777 || | | |||||||| || ||| || ||||| | || ||||||| || |||| ||| Sbjct 652 GGTA-TCAAGATGTCGGAAACCTATAGAGGAA-TAGTGCTGGATTTAATCGGAGCTTCT- 708 Query 778 TTAGC-GATCTTGCTAA-ACAGGGTGTCACCGAGCAAGAGAAGGTGGACACTTTCAGA-A 834 ||| ||||||||| | | ||||||||| ||||||||| ||||||||| |||||| | | Sbjct 709 TTAAATGATCTTGCTCAGA-AGGGTGTCATCGAGCAAGACAAGGTGGACTCTTTCA-ATA 766 Query 835 CCTCAATTTACTTTGCAGAACAAGGTGAGATAAGGCAAATCATTGAGGAGAATGGGAAGT 894 | || | ||| ||| || ||| ||| | |||||||||||||| ||||| ||||||| Sbjct 767 TCACACTCTACACTGCCGAGGAAGACGAGTTGAGGCAAATCATTGAAGAGAACGGGAAGT 826 Query 895 TCACAATCGAGGCTTTTGAAGATATCATTCACGCTAAAAACGAGTT-TC-CTTTTGACCC 952 ||||||| || ||||| || ||||||||||| | | ||| || | || ||| ||||| Sbjct 827 TCACAATTGAAGCTTTCGAGGATATCATTCA-G-TCAAA-CGGGGAGTCGCTT--GACCC 881 Query 953 CAAGA-CATTGGCCATCTCTTTCAAGGCCTTC-TATGGTGCTTTCATTTCCGCACATTTT 1010 ||||| | ||||| |||| || ||| | | | | ||| | | |||| ||| |||||||| Sbjct 882 CAAGATC-TTGGCTGTCTCCTTGAAGTC-TGCCTTTGGAGGTATCATATCCTCACATTTT 939 Query 1011 GGAGTCGAAGTCATGAGGAAAGCCTTTGAGCTTGTTGAGGTCAAGGCACGCGAACAGATT 1070 |||| ||||| ||||||||||||||||||||| || |||| |||||||| | || | ||| Sbjct 940 GGAGCCGAAGCCATGAGGAAAGCCTTTGAGCTCGTCGAGGCCAAGGCACACCAAGA-ATT 998 Query 1071 T-CTCGCCTCCATAACT-CCAAACCCGGAATGCAGTACCTCATCGTGCTTCGCAAGAACT 1128 | |||||||| | || | ||||||||| |||||| ||||| ||||| ||||||||||||| Sbjct 999 TTCTCGCCTCAAGAA-TGCCAAACCCGCAATGCAATACCTTATCGTACTTCGCAAGAACT 1057 > Ahg925862 jgi|Araly1|925862|scaffold_201423.1 Length=758 Score = 562 bits (304), Expect = 2e-159 Identities = 513/613 (84%), Gaps = 17/613 (3%) Strand=Plus/Plus Query 46 GAGAAAAAAGAGAGAGAGATATCATGACTACTACTCCAGATTGGATCATGATTGGAGGAG 105 |||| |||||| ||||||| || ||| || |||||||||| ||| ||||| ||||||||| Sbjct 1 GAGAGAAAAGAAAGAGAGA-ATAATGTCTCCTACTCCAGAATGGGTCATGGTTGGAGGAG 59 Query 106 ACGGTCCTGAGAGTTATAACCAACAATCCTCGTATCAGAGAGCA-TTGTTGGAAGCGA-C 163 | |||||||||||||| || || || || |||||||| |||| | ||| || |||| | | Sbjct 60 AAGGTCCTGAGAGTTACAAGCAGCATTCTTCGTATCAAAGAG-ATTTGCTGAAAGC-AGC 117 Query 164 AAAGGACAAGATGACCAAGGCGATCTCAGCCAATCTCGA-CCTAGACTTGATTTCGAATC 222 |||||| || || | | || ||||||||| || ||| | ||| || ||||||||||||| Sbjct 118 AAAGGATAAAATAAACGCGGTGATCTCAGCAAACCTC-AGCCTCGATTTGATTTCGAATC 176 Query 223 GCTTCATTGTAGCGGATTTCGGTTGTGCAAGTGGACCTAACACTTTTGTGGCAGTTCAAA 282 | || | ||| ||||||||||||||||| |||||||||||||||||||||||||| |||| Sbjct 177 GGTTTAGTGTTGCGGATTTCGGTTGTGCGAGTGGACCTAACACTTTTGTGGCAGTCCAAA 236 Query 283 ACATAATAGATGCGGTAGAAGAAAAGTACCGTAGAGAAACCGGACAAAACCCGGCAGATA 342 ||||||||||||| || ||||| ||||| | |||||||||||||||||||||| |||||| Sbjct 237 ACATAATAGATGCCGTGGAAGAGAAGTATCTTAGAGAAACCGGACAAAACCCGTCAGATA 296 Query 343 ACATCGAGTTCCAAGTCCTCTTCAATGATTTCAGCC-TCAATGATTTCAACACTCTCTTC 401 ||||||||||||||||||||||||| || || ||| | || |||||||||||||||||| Sbjct 297 ACATCGAGTTCCAAGTCCTCTTCAACGACTTAAGCAAT-AACGATTTCAACACTCTCTTC 355 Query 402 C-AGACACTTCCACCCGGA-AGAAGATACTTCAGCGCTGGAGTTCCTGGTTCCTTCTTCG 459 | || ||||||| | ||| || ||||||| ||| ||||| ||||| | ||||||||||| Sbjct 356 CGAG-CACTTCCTTC-GGACAGGAGATACTACAGTGCTGGCGTTCCCGATTCCTTCTTCG 413 Query 460 AACGTGTTCTTCCTAAGGAGAGTTTCCACATCGGAGTCATGAGTTACGCGTTCCATTTCA 519 | |||||||||||||| ||||| ||||||| |||||||||| |||||| || || |||| Sbjct 414 ACCGTGTTCTTCCTAAACAGAGTATCCACATAGGAGTCATGAATTACGCTTTTCAGTTCA 473 Query 520 CCTCCAAAATCCCCAAAGGGAT-TATGGACCGCGACTCTCCCTTGTGGAACAAAGACATG 578 |||||||||||||||||||||| | | ||||| |||||||| ||||||||| |||||| Sbjct 474 CCTCCAAAATCCCCAAAGGGATCTCCG-ACCGCAACTCTCCCCTGTGGAACAGAGACATA 532 Query 579 CAGTGCACGGGGTTCAACCCCGCTGTCAAGAAAGCGTATCTTGACCAGTACTCTATCGAC 638 || ||||| || |||||| | |||||||| || ||| |||| |||||||| ||||| Sbjct 533 CATTGCACTGGCTTCAACAACAAGGTCAAGAAGGCATATTTTGATCAGTACTCGCTCGAC 592 Query 639 ACCAA-AAT-TCT 649 |||| ||| ||| Sbjct 593 TCCAAGAATATCT 605 > Ahg908199 jgi|Araly1|908199|Al_scaffold_0002_1280 Length=534 Score = 388 bits (210), Expect = 4e-107 Identities = 301/345 (87%), Gaps = 6/345 (2%) Strand=Plus/Plus Query 98 TGGAGGAGACGGTCCTGAGAGTTATAACCAACAATCCTCGTATCAGAGAGCATTGTTGGA 157 ||| ||||| |||||||||||||||||||||||||| |||||||||||||||||| | || Sbjct 15 TGGTGGAGAAGGTCCTGAGAGTTATAACCAACAATCTTCGTATCAGAGAGCATTGCTAGA 74 Query 158 AGCGACAAAGGACAAGATGACCAAGGCGATCTCAGCCAATCTCGACCTAGACTTGATTTC 217 || | ||||||| ||||||||| ||||||||||||| || ||| |||| || |||||||| Sbjct 75 AGTGGCAAAGGAAAAGATGACCGAGGCGATCTCAGCGAACCTCAACCTCGATTTGATTTC 134 Query 218 GAATC-GCTTCATTGTAGCGGATTTCGGTTGTGCAAGTGGACCTAACACTTTTGTGGCAG 276 || | | |||| | |||| || ||||||||||| ||||||||||| ||||||||| ||| Sbjct 135 CAACCAG-TTCAGTATAGCAGACTTCGGTTGTGCGAGTGGACCTAATACTTTTGTGTCAG 193 Query 277 TTCAAAACATAATAGATGCGGTAGAAGAAAAGTACCGTAGAGAAACCGGACAAAACCCGG 336 | ||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 194 TCCAAAACATAATTGATGCGGTAGAAGAAAAATACCGTAGAGAAACCGGACAAAACCCGG 253 Query 337 CAGATAACATCGAGTTCCAAGTCCTCTTCAATGA-TTTCAGCCTCAATGATTTCAACACT 395 || | |||||| |||||||||| ||||||||||| ||| ||| |||| |||||||||||| Sbjct 254 CAAACAACATCAAGTTCCAAGTTCTCTTCAATGACTTT-AGCATCAACGATTTCAACACT 312 Query 396 CTCTTCCAGACACTTCCACCCGGAAGAAGATACT-TCAGCGCTGG 439 ||||| || |||||||| | || |||||||||| | |||||||| Sbjct 313 CTCTTTCAAACACTTCCTCAAGGGAGAAGATACTAT-AGCGCTGG 356 Score = 176 bits (95), Expect = 3e-43 Identities = 132/149 (89%), Gaps = 5/149 (3%) Strand=Plus/Plus Query 538 GGATTATGGACCGCGACTCTCCCTTGTGGAACAAAGACATGCAGTGCACGGGGTTCAACC 597 |||| |||||||| ||||||||||||||||||||||||||||||||||| |||| ||||| Sbjct 386 GGATCATGGACCGTGACTCTCCCTTGTGGAACAAAGACATGCAGTGCACCGGGTACAACC 445 Query 598 CCGCTGTCAAGAAAGCGTATCTTGACCAGTACTCTATCGACACCAA-AATTCTTTTAGAT 656 || || || ||||||||| |||| || ||||||||||||||||| || || || ||| Sbjct 446 AAGCGGT-AAAAAAGCGTATTTTGATCAATACTCTATCGACACCAATAA-TC--TTGGAT 501 Query 657 GCTAGAGCTGAAGAGCTCGTGCCCGGGGG 685 ||||||||||||||||||||||||||||| Sbjct 502 GCTAGAGCTGAAGAGCTCGTGCCCGGGGG 530 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 48568596258 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5