BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G66720.1
Length=1115
Score E
Sequences producing significant alignments: (Bits) Value
Ahg338902 jgi|Araly1|338902|fgenesh1_pg.C_scaffold_2001001 1563 0.0
Ahg925862 jgi|Araly1|925862|scaffold_201423.1 878 0.0
Ahg925861 jgi|Araly1|925861|scaffold_201422.1 375 3e-103
> Ahg338902 jgi|Araly1|338902|fgenesh1_pg.C_scaffold_2001001
Length=1059
Score = 1563 bits (846), Expect = 0.0
Identities = 991/1062 (93%), Gaps = 6/1062 (1%)
Strand=Plus/Plus
Query 57 ATGTCACCTACTCCAGAATGGGTCATGGTTGGAGGAGAAGGTCCTGAGAGTTACAAGCAG 116
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGTCTCCTACTCCAGAATGGGTCATGGTTGGAGGAGAAGGTCCTGAGAGTTACAAGCAG 60
Query 117 CATTCTTCGTATCAGAGAGATTTGCTGAAAGCAGCAAAGGATAAAATAAACGCGGTGATT 176
|||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||
Sbjct 61 CATTCTTCGTATCAGAGAGATTTGTTGAAAGCAGCAAAGGATGAAATAAACGCGGTGATC 120
Query 177 TCAACGAACCTCAGCCTCAATTTGATTTCGAATCGGTTCAGTGTTGCGGATTTCGGTTGT 236
|| |||||||||||||| |||||||||||| ||||||||||||||||||||||||||||
Sbjct 121 GCAGCGAACCTCAGCCTCGATTTGATTTCGAGTCGGTTCAGTGTTGCGGATTTCGGTTGT 180
Query 237 GCAAGTGGACCTAACACTTTTGTCGCAGTCCAAAACATAATAGATGCCGTGGAAGAGAAG 296
|| |||||||||||||||||| | ||||||||||||||||||||||||||||||||||||
Sbjct 181 GCGAGTGGACCTAACACTTTTATGGCAGTCCAAAACATAATAGATGCCGTGGAAGAGAAG 240
Query 297 TATCTTAGAGAAACCGGACAAAACCCGGACG-ATAACATCGAGTTCCAGGTCCTCTTCAA 355
|||||||||||||||||||||||||||| || |||||||||||||||| |||||||||||
Sbjct 241 TATCTTAGAGAAACCGGACAAAACCCGG-CGGATAACATCGAGTTCCAAGTCCTCTTCAA 299
Query 356 CGACTTAAGCAATAACGATTTCAACACTCTCTTCCAGGGACTTCCTTCTG-GCAGGAGAT 414
|||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||
Sbjct 300 CGACTTAAGCAATAACGATTTCAACACTCTCTTCCAGGGACTTCCTTC-GAGCAGGAGAT 358
Query 415 ACTATAGTGCTGCCATTCCTGGTTCCTTCTTTGACCGTGTTCTTCCTAAGCATAGTATCC 474
|||||||||||| | | || ||||||||||| |||||||||||||||||||| |||||||
Sbjct 359 ACTATAGTGCTGGCGTCCCCGGTTCCTTCTTCGACCGTGTTCTTCCTAAGCAGAGTATCC 418
Query 475 ACATAGGAGTCATGAATTATGCTTTTCAATTCACCTCCAAAATCCCCAAAGGGATCTCAG 534
|||||||||| |||||||| |||||||| ||||||||||||||||||||||||||||| |
Sbjct 419 ACATAGGAGTTATGAATTACGCTTTTCAGTTCACCTCCAAAATCCCCAAAGGGATCTCCG 478
Query 535 ACCGCAACTCTCCCCTCTGGAACAGAGACATGCATTGCACCGGATTTAACAACAAGGTCA 594
|||||||||||||| | |||||||||||||| |||||||| || || |||||||||||||
Sbjct 479 ACCGCAACTCTCCCATGTGGAACAGAGACATACATTGCACTGGCTTCAACAACAAGGTCA 538
Query 595 AGAAAGCGTATCTTGATCAGTTCTCGCTCGACTCCAAGAATATATTGGATGCTCGAGCTG 654
||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 539 AGAAAGCGTATTTTGATCAGGACTCGCTCGACTCCAAGAATATATTGGATGCTCGAGCTG 598
Query 655 AAGAGCT-TGTGCCCGAGGGATTAATGTTGCTTTTAGGATCGTGTCTAAGAGACGGTATC 713
||||||| | | |||| |||| | | |||||||||||||||||||||||||| ||||||
Sbjct 599 AAGAGCTCT-TACCCGGGGGACTGTTATTGCTTTTAGGATCGTGTCTAAGAGAAGGTATC 657
Query 714 AAGATGTCGGAAACATATAGAGGAATAGTGTTGGACTTAATCGGAGCCTCTTTAAATGAT 773
|||||||||||||| ||||||||||||||| |||| ||||||||||| ||||||||||||
Sbjct 658 AAGATGTCGGAAACCTATAGAGGAATAGTGCTGGATTTAATCGGAGCTTCTTTAAATGAT 717
Query 774 CTTGCTCAGCAGGGTGTCATTGAGAAAGACAAGGTGGAGTCTTTCAACATCACACTCTAC 833
||||||||| |||||||||| ||| ||||||||||||| |||||||| ||||||||||||
Sbjct 718 CTTGCTCAGAAGGGTGTCATCGAGCAAGACAAGGTGGACTCTTTCAATATCACACTCTAC 777
Query 834 ATTGCAGAAGAAGGCGAGTTGAGGCAAATCATAGAAGAGAACGGGAAGTTCACAATTGAG 893
| ||| || |||| |||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 778 ACTGCCGAGGAAGACGAGTTGAGGCAAATCATTGAAGAGAACGGGAAGTTCACAATTGAA 837
Query 894 GCATTCGAGGATATCATTCAGCCAAACGGGGAGTCGCTTGACCCCAAAATCTTGGCTGTC 953
|| |||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||
Sbjct 838 GCTTTCGAGGATATCATTCAGTCAAACGGGGAGTCGCTTGACCCCAAGATCTTGGCTGTC 897
Query 954 TCCTTGAAGTCTGCCTTTGGAGGTATCCTCTCCGCACATTTTGGAGCCGAAGCGATGATG 1013
||||||||||||||||||||||||||| | ||| ||||||||||||||||||| |||| |
Sbjct 898 TCCTTGAAGTCTGCCTTTGGAGGTATCATATCCTCACATTTTGGAGCCGAAGCCATGAGG 957
Query 1014 AAAGCCTTTGAGCTCGTCGAGGCCAAGGCACACCAAGAATTTTCTCGTCTCCAGAATGCC 1073
||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||
Sbjct 958 AAAGCCTTTGAGCTCGTCGAGGCCAAGGCACACCAAGAATTTTCTCGCCTCAAGAATGCC 1017
Query 1074 AAACCCACAATGCAATACCTCATCGTACTTCGCAAGAACTGA 1115
|||||| ||||||||||||| |||||||||||||||||||||
Sbjct 1018 AAACCCGCAATGCAATACCTTATCGTACTTCGCAAGAACTGA 1059
> Ahg925862 jgi|Araly1|925862|scaffold_201423.1
Length=758
Score = 878 bits (475), Expect = 0.0
Identities = 566/609 (93%), Gaps = 9/609 (1%)
Strand=Plus/Plus
Query 32 gagaaaaaagaaagCGAGCGAAATAATGTCACCTACTCCAGAATGGGTCATGGTTGGAGG 91
|||| |||||||| ||| | ||||||||| |||||||||||||||||||||||||||||
Sbjct 1 GAGAGAAAAGAAA--GAGAG-AATAATGTCTCCTACTCCAGAATGGGTCATGGTTGGAGG 57
Query 92 AGAAGGTCCTGAGAGTTACAAGCAGCATTCTTCGTATCAGAGAGATTTGCTGAAAGCAGC 151
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 58 AGAAGGTCCTGAGAGTTACAAGCAGCATTCTTCGTATCAAAGAGATTTGCTGAAAGCAGC 117
Query 152 AAAGGATAAAATAAACGCGGTGATTTCAACGAACCTCAGCCTCAATTTGATTTCGAATCG 211
|||||||||||||||||||||||| ||| | |||||||||||| ||||||||||||||||
Sbjct 118 AAAGGATAAAATAAACGCGGTGATCTCAGCAAACCTCAGCCTCGATTTGATTTCGAATCG 177
Query 212 GTTCAGTGTTGCGGATTTCGGTTGTGCAAGTGGACCTAACACTTTTGTCGCAGTCCAAAA 271
||| ||||||||||||||||||||||| |||||||||||||||||||| |||||||||||
Sbjct 178 GTTTAGTGTTGCGGATTTCGGTTGTGCGAGTGGACCTAACACTTTTGTGGCAGTCCAAAA 237
Query 272 CATAATAGATGCCGTGGAAGAGAAGTATCTTAGAGAAACCGGACAAAACCCGG-ACGATA 330
|||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||
Sbjct 238 CATAATAGATGCCGTGGAAGAGAAGTATCTTAGAGAAACCGGACAAAACCCGTCA-GATA 296
Query 331 ACATCGAGTTCCAGGTCCTCTTCAACGACTTAAGCAATAACGATTTCAACACTCTCTTCC 390
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 297 ACATCGAGTTCCAAGTCCTCTTCAACGACTTAAGCAATAACGATTTCAACACTCTCTTCC 356
Query 391 -AGGGACTTCCTTCTGG-CAGGAGATACTATAGTGCTGCCATTCCTGGTTCCTTCTTTGA 448
|| ||||||||| || |||||||||||| ||||||| | |||| | ||||||||| ||
Sbjct 357 GAGC-ACTTCCTTC-GGACAGGAGATACTACAGTGCTGGCGTTCCCGATTCCTTCTTCGA 414
Query 449 CCGTGTTCTTCCTAAGCATAGTATCCACATAGGAGTCATGAATTATGCTTTTCAATTCAC 508
||||||||||||||| || |||||||||||||||||||||||||| |||||||| |||||
Sbjct 415 CCGTGTTCTTCCTAAACAGAGTATCCACATAGGAGTCATGAATTACGCTTTTCAGTTCAC 474
Query 509 CTCCAAAATCCCCAAAGGGATCTCAGACCGCAACTCTCCCCTCTGGAACAGAGACATGCA 568
|||||||||||||||||||||||| ||||||||||||||||| |||||||||||||| ||
Sbjct 475 CTCCAAAATCCCCAAAGGGATCTCCGACCGCAACTCTCCCCTGTGGAACAGAGACATACA 534
Query 569 TTGCACCGGATTTAACAACAAGGTCAAGAAAGCGTATCTTGATCAGTTCTCGCTCGACTC 628
|||||| || || ||||||||||||||||| || ||| ||||||||| ||||||||||||
Sbjct 535 TTGCACTGGCTTCAACAACAAGGTCAAGAAGGCATATTTTGATCAGTACTCGCTCGACTC 594
Query 629 CAAGAATAT 637
|||||||||
Sbjct 595 CAAGAATAT 603
> Ahg925861 jgi|Araly1|925861|scaffold_201422.1
Length=385
Score = 375 bits (203), Expect = 3e-103
Identities = 299/343 (87%), Gaps = 15/343 (4%)
Strand=Plus/Plus
Query 787 GTGTCATTGAGAAAGACAAGGTGGAGTCTTTCAACATCACACTCTACATTGCAGAAGAAG 846
|||| || ||| ||||||||||||| ||||||||||||||||||||||||||||| ||||
Sbjct 31 GTGTAATCGAGCAAGACAAGGTGGACTCTTTCAACATCACACTCTACATTGCAGAGGAAG 90
Query 847 GCGAGTTGAGG-C----A---AA-TCATAGAAGAGAACGGGAAGTTCACAATTGAGGCAT 897
||||||||||| | | || |||||||||||||||| ||||||||||| |||| |
Sbjct 91 GCGAGTTGAGGGCCTTGAGGCAAATCATAGAAGAGAACGGAAAGTTCACAATAAAGGCTT 150
Query 898 TCGAGGATATCATTCAGCCAAACGGGGAGTCGCTTG-ACCCCAAAATCTTGGCTGTCTCC 956
||||||||||||||||||||| |||||| || ||| ||||||| ||||||||||||| |
Sbjct 151 TCGAGGATATCATTCAGCCAAGTGGGGAGACG-TTGGACCCCAAGATCTTGGCTGTCTAC 209
Query 957 TTGAAGTCTGCCTTTGGAGGTATCCTCTCCGCACATTTTGGAGCCGAAGCGATGATGAAA 1016
|| |||| ||||||| |||||||||| ||| ||||||||||||||||| | |||| ||||
Sbjct 210 TTTAAGTGTGCCTTTAGAGGTATCCTATCCACACATTTTGGAGCCGAAACCATGAGGAAA 269
Query 1017 GCCTTTGAGCTCGTCGAGGCCAAGGCACACCAAGAATTTTCTCGTCTCCAGAATGCCAAA 1076
|||||||||||||| ||| |||||||||||| |||||||||||| |||||||| ||||||
Sbjct 270 GCCTTTGAGCTCGTTGAGTCCAAGGCACACCTAGAATTTTCTCGCCTCCAGAAAGCCAAA 329
Query 1077 CCCACAATGCAATACCTCAT----CGTACTTCGCAAGAACTGA 1115
||| |||||||||||||||| ||||||||| |||||||||
Sbjct 330 CCCGCAATGCAATACCTCATATATCGTACTTCGTAAGAACTGA 372
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 41553979530
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5