BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G66730.1
Length=4724
Score E
Sequences producing significant alignments: (Bits) Value
Ahg338905 jgi|Araly1|338905|fgenesh1_pg.C_scaffold_2001004 3402 0.0
> Ahg338905 jgi|Araly1|338905|fgenesh1_pg.C_scaffold_2001004
Length=4242
Score = 3402 bits (1842), Expect = 0.0
Identities = 2377/2623 (91%), Gaps = 85/2623 (3%)
Strand=Plus/Plus
Query 311 ATGGCCTCTGATTCC-GCCGGAGCCACAATCTCCGGCAACTTCTCAAACT-CCGACAACT 368
|||||| | |||||| | ||||| ||||||||||||||||||| |||| | ||| |||
Sbjct 1 ATGGCCACCGATTCCAG-CGGAGTCACAATCTCCGGCAACTTCCCAAA-TGACGAGAACG 58
Query 369 CAGAAACCCTAAATCTCAACACTACGA-AACTCTACTCATCAGCAATTTCCTCTATCTCT 427
||||||||||||| ||| ||||||| | ||||||||||||||||||| ||||| |||||
Sbjct 59 CAGAAACCCTAAACCTCGACACTAC-AGAACTCTACTCATCAGCAATATCCTCCGTCTCT 117
Query 428 CCACAA-TTCCCCTCACCGAAACCAAC-ATCTTCATGTCCTTCAATCCCT-AATTCAAAA 484
|||||| |||||| ||||||||||| | || |||| || |||||||||| || ||||||
Sbjct 118 CCACAATTTCCCC-CACCGAAACCACCGTTC-TCATCTCTTTCAATCCCTCAA-TCAAAA 174
Query 485 CGAATCCCTAATACTAACTTCATCGTCGATCTCTTCCGCCTCCCACACCAATCAT---CC 541
||||||||||| ||||||||||||||||||||||||||| ||||||| || || | ||
Sbjct 175 CGAATCCCTAAGACTAACTTCATCGTCGATCTCTTCCGCTTCCCACAACATTCCTCCACC 234
Query 542 TCCGTCGCTTTCTTCCTCTCACATTTCCACTCCGATCACTACTCCGGTCTCTCCTCTTCC 601
||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||| |
Sbjct 235 TCCGTCGCTTTCTTCCTCTCACATTTCCATTCCGATCACTATTCCGGTCTCTCCTCTACT 294
Query 602 TGGTCCAAAGGAATAATCTACTGCTCACACAAAACCGCTCGTCTCGTTGCAGAAATCCTT 661
||||| |||||||| |||| ||||||||||||||||||||||||||| | ||||||||||
Sbjct 295 TGGTCTAAAGGAATTATCTTCTGCTCACACAAAACCGCTCGTCTCGTCGAAGAAATCCTT 354
Query 662 CAAGTTCCTTCACAATTCGTTTTCGCTTTACCTATGAACCAAATGGTTAAGATCGATGGC 721
|||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||
Sbjct 355 CAAGTTCCTTCACAATTCGTCTTCGCTTTACCTATGAACCAAATGGTTATGATCGATGGC 414
Query 722 TCTGAAGTTGTGTTGATTGAAGCTAATCATTGTCCAGGAGCGGTACAGTTTTTGTTTAAA 781
||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||
Sbjct 415 TCTGAAGTTGTGTTGATTGAAGCAAATCACTGTCCAGGAGCGGTACAGTTTTTGTTTAAA 474
Query 782 GTCAAATTAGAGAGCAG-TGGATTTGAAAAGTATGTTCATACTGGAGATTTTAGATTCTG 840
||||||||||||| | | ||||||||| | ||||||||||||||||||||| ||||||||
Sbjct 475 GTCAAATTAGAGAAC-GATGGATTTGAGAGGTATGTTCATACTGGAGATTTCAGATTCTG 533
Query 841 TGATGAGATGAGATTTGATCCGTTTCTTAATGGTTTTGTTGGTTGTGATGGTGTTTTTCT 900
||||||||||||||||||| ||||||||| ||||||| |||| |||||||||||||||||
Sbjct 534 TGATGAGATGAGATTTGATTCGTTTCTTAGTGGTTTTATTGGATGTGATGGTGTTTTTCT 593
Query 901 CGATACTACTTATTGTAATCCTAAGTTTGTTTTTCCGA-GTCAAGAAGAGTCTGTTGGTT 959
||||||||||||||||||||||||||||||||||||| | ||||| || ||||||||||
Sbjct 594 GGATACTACTTATTGTAATCCTAAGTTTGTTTTTCCGACG-CAAGAGGAATCTGTTGGTT 652
Query 960 ATGTTGTTAGTGTGATAGAT-A-A--GAT--T-A----GT---GA-G--G-AGAAGGTTT 1001
|||||||||||||||||||| | | ||| | | || || | | |||||||||
Sbjct 653 ATGTTGTTAGTGTGATAGATAAGATTGATGGTGAGTGTGTGGAGACGAAGAAGAAGGTTT 712
Query 1002 TGTTTCTTGTAGCTACTTATGTTGTTGGTAAAGAGAAGATTTTGGTTGAGATTGCTAGGA 1061
|||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 713 TGTTTCTTGTTGCTACTTATGTTATTGGTAAAGAGAAGATTTTGGTTGAGATTGCTAGGA 772
Query 1062 GATGTAAGAGGAAAATCGTTGTCGATGC-GAGAAAGATGTCGATGTTGTCGG-TTTTGGG 1119
|||||||||||||||| ||||| ||| | || ||||||||||| ||| || |||||||
Sbjct 773 GATGTAAGAGGAAAATTGTTGTGGAT-CTCAGGAAGATGTCGATTTTG-GGGATTTTGGG 830
Query 1120 GTGTGGTGAGGAG-GGAATGTTTACTGAAGATGAGAATGAGAGTGATGTTCATGTTGTGG 1178
|||||| || ||| ||||||||||| || |||| ||||| ||||||||||||||||||||
Sbjct 831 GTGTGGGGA-GAGTGGAATGTTTACGGAGGATGTGAATGTGAGTGATGTTCATGTTGTGG 889
Query 1179 GGTGGAATGTGTTGGGTGAGACTTGGCCGTATTTTAGGCCGAATTTTGTGAAGATGAATG 1238
|||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||
Sbjct 890 GGTGGAATGTGTTGGGAGAGACTTGGCCGTATTTTCGGCCGAATTTTGTGAAGATGAATG 949
Query 1239 AGATTATGGTTGAGAAAGGGTATGATAAGGTTGTAGGTTTTGTGCCTACAGGGTGGACTT 1298
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 950 AGATTATGGTCGAGAAAGGGTATGATAAGGTTGTAGGTTTTGTGCCTACAGGGTGGACTT 1009
Query 1299 ATGAAGTGAAGCGGAATAAGTTTGCGGTTAGGTTTAAAGATTCGATGGAGATTCATCTTG 1358
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1010 ATGAAGTGAAGCGGAATAAGTTTGCCGTTAGGTTTAAAGATTCGATGGAGATTCATCTTG 1069
Query 1359 TACCGTATAGTGAGCATTCGAATTATGATGAACTTAGAGAGTTTATAAAGTTCCTGAAAC 1418
|||||||||||||||||||||| |||||||| |||||||||| ||||||||| ||||||
Sbjct 1070 TACCGTATAGTGAGCATTCGAACTATGATGAGCTTAGAGAGTACATAAAGTTCTTGAAAC 1129
Query 1419 CTAAAAGAGTTATTCCTACTGTTGGAGTTGATATTGAGAAGTTTGATTGCAAGGAGGTTA 1478
||||||||||||||||||| |||||||||||||| |||||| ||||| ||||||||||||
Sbjct 1130 CTAAAAGAGTTATTCCTACAGTTGGAGTTGATATCGAGAAGCTTGATAGCAAGGAGGTTA 1189
Query 1479 ATAAGATGCAGAAGCATTTCTCTGGATTGGTTGATGAGATGGCAAACAAGAAAGATTTTT 1538
||||||||||||| ||||| ||||||||||| ||||| ||||||||||||||||||||||
Sbjct 1190 ATAAGATGCAGAAACATTTTTCTGGATTGGTAGATGAAATGGCAAACAAGAAAGATTTTT 1249
Query 1539 TATTGGGTTTCTATCGTCAGTCTTACCAGAAGAATGAGAAAAGTGATGTAGATGTTGTGT 1598
|||||||||||||| | ||||||||||||||||||||||||| ||| |||||||||||||
Sbjct 1250 TATTGGGTTTCTATTGCCAGTCTTACCAGAAGAATGAGAAAAATGACGTAGATGTTGTGT 1309
Query 1599 CACACAGTG-CTGAGGTTTACGAAGAGGAAGAGAAAAATGCATGTGAAGACGGTGGAGAG 1657
|| | || ||||||| |||| || |||||| ||||||||||||||||||||||||||
Sbjct 1310 CAGGCT-TGGCTGAGGTCTACGCAGGGGAAGATAAAAATGCATGTGAAGACGGTGGAGAT 1368
Query 1658 AATGTTCCATCATCTAGAGGACCCATATTGCATGATACAACTCCAAGTAGTGATTC---- 1713
|||||||||||||||||||||||| |||||||||||||| ||||||||||||||||
Sbjct 1369 AATGTTCCATCATCTAGAGGACCCTTATTGCATGATACAGCTCCAAGTAGTGATTCTTCG 1428
Query 1714 ---A---A--GATTGCT-GATAAAACTACGTGATTCTTTGCCTGCTTGGGTCACTGAAGA 1764
| | ||||||| | || |||||||||||||||||||||||||||||||||||||
Sbjct 1429 GTGACCGAAAGATTGCTTG-TAGAACTACGTGATTCTTTGCCTGCTTGGGTCACTGAAGA 1487
Query 1765 GCAGATGTTAGAT-CTGATTAAGAAGCATGCTGGTAATCCCGTGGATATAGTAAGTAACT 1823
|||||||||| || |||||||||||||||||||||||||||||||| ||||| |||||||
Sbjct 1488 GCAGATGTTA-ATTCTGATTAAGAAGCATGCTGGTAATCCCGTGGAAATAGTTAGTAACT 1546
Query 1824 TTTATGAATATGAAGCAGAGCTTTACAAGCAAGCCTCTCTTCCCACGCCTTCCTTG-AAT 1882
||||||||| |||||||||||||||||||||| ||||||||||||||| ||||||| ||
Sbjct 1547 TTTATGAATGTGAAGCAGAGCTTTACAAGCAATCCTCTCTTCCCACGCTTTCCTTGGAA- 1605
Query 1883 AATCAGGCTGTTTTGTTTGATGACGATGTAACCGACCTCCAACCTAATCCTGTGAA-AGG 1941
|||||| ||||||||||||||||||||||||| ||| | ||||| ||||||||||| ||
Sbjct 1606 AATCAGCCTGTTTTGTTTGATGACGATGTAACAGACTTGCAACCAAATCCTGTGAAGAG- 1664
Query 1942 CATTTGTCCAGATGTTCAAGCAATTCAAAAAGGTTTTGACTTACCAAGAAAAATGAATTT 2001
|| ||||||||||||||||||| ||||| |||||||||||||||||| ||||||||||||
Sbjct 1665 CACTTGTCCAGATGTTCAAGCAGTTCAAGAAGGTTTTGACTTACCAAAAAAAATGAATTT 1724
Query 2002 AACAAAGGGTACTATTTCTCCTGGGAAGAGAGGCAAAAGCTCGGGCAGTAAGTCAAACAA 2061
||||||||||||||||||||||||||| ||||||||||||||||||||||| || |||||
Sbjct 1725 AACAAAGGGTACTATTTCTCCTGGGAAAAGAGGCAAAAGCTCGGGCAGTAAATCGAACAA 1784
Query 2062 GAAGGCCAAGAAAGATCCAAAATCAAAACCAGTTGGTCCAGGGCAGCCAAC-ACTTTTTA 2120
|||||||||||||||||||||||||| ||||||| ||||| |||||||||| | ||||||
Sbjct 1785 GAAGGCCAAGAAAGATCCAAAATCAAGACCAGTTAGTCCAAGGCAGCCAACCA-TTTTTA 1843
Query 2121 AGTTTTTCAATAAGGTCTTAGATGGTGGATCTAATTCTGTTAGTGTTGGTTCAGAGACTG 2180
|||| |||||||||||||| ||| ||||||||||||||||| ||||||| ||||||||||
Sbjct 1844 AGTTCTTCAATAAGGTCTTGGATAGTGGATCTAATTCTGTTGGTGTTGGATCAGAGACTG 1903
Query 2181 AAGAATGCAATACAGATAAAAAGATGGTCCACATTGATGCTTCAGAAGCATACAAAGAAG 2240
|||| || ||||||||||||||||||| ||||| ||||||| ||||||||||||||||||
Sbjct 1904 AAGAGTGTAATACAGATAAAAAGATGGGCCACAATGATGCTACAGAAGCATACAAAGAAG 1963
Query 2241 TGACAGATCAATTTATTGATATTGTTAACGGTTCTGAATCTTTAAGAGATTATGCTGCTT 2300
|||||||||||||||||||||||||||| || ||||||||| ||||||||||||||||||
Sbjct 1964 TGACAGATCAATTTATTGATATTGTTAATGGCTCTGAATCTCTAAGAGATTATGCTGCTT 2023
Query 2301 CCATCATTGATGAGGCTAAAGGAGATATAAGTAGGGCACTGAACATCTATTATAGCAAAC 2360
|||||||||||||||||||||||||||||| ||||||||||||||||||||| || || |
Sbjct 2024 CCATCATTGATGAGGCTAAAGGAGATATAAATAGGGCACTGAACATCTATTACAGTAA-C 2082
Query 2361 CCCGTGAAATACCTGGTGACCATGCAGGTGAGAGAGGACTCTCTAGCAAAACAATTCAGT 2420
||| | |||||||||| | || || || ||||| |||||| |||||||||
Sbjct 2083 CCC---A--TACCTGGTGA----G--GG--AG-GA---CTCTCCAGCAAATCAATTCAGT 2125
Query 2421 ATCCGAAATGTTCAGAAGCATGCTCCTCTCAGGAGGACAAAAAGGCTTCAGAAAATTCAG 2480
| || | ||| ||||||| || ||||||||||||| ||| |||| |||||||| ||||
Sbjct 2126 TTTCGCATTGTCCAGAAGCGTGTTCCTCTCAGGAGGGGAAACAGGCGTCAGAAAAGTCAG 2185
Query 2481 GACATGCAGTCAACATATGCGTGCAGACATCAGCAGAGGAAAGTGTAGACAAGAATTATG 2540
||||||||||||||||||| |||||| ||||||||||||||| ||| ||||| |||||||
Sbjct 2186 GACATGCAGTCAACATATGTGTGCAGTCATCAGCAGAGGAAATTGTGGACAAAAATTATG 2245
Query 2541 TATCTCTACCTCCTGAAAAATATCAACCTAAAGAGCACGCTTGTTGGAGGGAGGGACAGC 2600
||||||||||||||||| ||||| |||||||||| ||||| ||||||||||| |||||||
Sbjct 2246 TATCTCTACCTCCTGAACAATATAAACCTAAAGAACACGCCTGTTGGAGGGATGGACAGC 2305
Query 2601 CTGCTCCATATATCCACCTTGTCCGAACATTTGCTTCTGTTGAAAGTGAAAAGGGAAAGA 2660
||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||
Sbjct 2306 CTGCTCCATATATCCACCTAGTCCGAACATTTGCTTCCGTTGAAAGTGAAAAGGGAAAGA 2365
Query 2661 TCAAAGCTATGTCTATGCTTTGCAACATGTTTAGAAGCTTGTTTGCTCTCTCTCCAGAAG 2720
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2366 TCAAAGCTATGTCTATGCTTTGCAACATGTTTAGAAGCTTGTTTGCTCTCTCTCCAGAAG 2425
Query 2721 ATGTTCTGCCCGCTGTTTATCTTTGCACAAATAAGATTGCCGCTGACCATGAGAATATTG 2780
|||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||
Sbjct 2426 ATGTTCTGCCCGCTGTTTATCTTTGCACAAATAAGATTTCGGCTGACCATGAGAATATTG 2485
Query 2781 AGCTTAACATTGGTGGAAGTCTAATCTCTTCTGCATTGGAAGAAGCATGTGGAATAAGTC 2840
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2486 ATCTTAACATTGGTGGAAGTCTAATCTCTTCTGCATTGGAAGAAGCATGTGGAATAAGTC 2545
Query 2841 GGTCTACTGTGAGAGATATGTATAATAGCTTGGGGGATCTTGG 2883
|| |||||||||| ||||||||||||||| || ||||||||
Sbjct 2546 GGCCTACTGTGAGGGATATGTATAATAGCACCGGAGATCTTGG 2588
Score = 2407 bits (1303), Expect = 0.0
Identities = 1521/1627 (93%), Gaps = 12/1627 (1%)
Strand=Plus/Plus
Query 2881 TGGGGATGTTGCTCAGCTATGTCGACAAACGCAAAAGCTACTGGTTCCTCCACCTCCACT 2940
||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2622 TGGAGATGTTGCGCAGCTATGTCGACAAACGCAAAAGCTACTGGTTCCTCCACCTCCACT 2681
Query 2941 TCTAGTTAGAGATGTGTTTTCAACTCTACGAAAGATAAGTGTGCAGACAGGTACTGGAAG 3000
|||| | ||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 2682 TCTAATCAGAGATGTGTTTTCAACTCTACGAAAGATAAGTGTGCAGTCAGGTACTGGAAG 2741
Query 3001 TACTAGGCTAAAGAAAAATCTCATCGTGAAGCTAATGCGCTCTTGTAGAGAGAAAGAGAT 3060
|||||||| ||||||||| || ||||||||||||||||||||||||||||||||||||||
Sbjct 2742 TACTAGGCAAAAGAAAAACCTTATCGTGAAGCTAATGCGCTCTTGTAGAGAGAAAGAGAT 2801
Query 3061 CAAATTTCTTGTTAGAACATTGGCCCGTAATTTAAGGATTGGCGCTATGTTGAGAACTGT 3120
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2802 CAAATTTCTTGTAAGAACATTGGCCCGTAATTTAAGGATTGGCGCTATGTTGAGAACTGT 2861
Query 3121 TCTACCTGCACTTGGGCGAGCAATCGTTATGAATTCTTTCTGGA-ATGACCATAATAAAG 3179
||| ||||||||||||||||||||||||||||||||||| |||| || |||||| ||||
Sbjct 2862 TCTTCCTGCACTTGGGCGAGCAATCGTTATGAATTCTTTTTGGAGTTG-CCATAACAAAG 2920
Query 3180 AACTATCAGAAAGCTGTTTCAGGGAGAAACTTGAGGGTGTTTCTGCTGCAGTAGTTGAGG 3239
|||| ||||||| |||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 2921 AACTGTCAGAAAACTGTTTCAGGGAGAAACTTGAGGGAGTTTCTGCTGCAGTAGTTGAGG 2980
Query 3240 CTTACAACATTCTTCCATCTCTGGACGTGGTTGTTCCTTCTCTCATGGACAAAGACATTG 3299
||||||| || ||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 2981 CTTACAATATACTTCCTTCTCTGGACGTGGTTGTTCCTTCTCTCATGGACAAAGACATTG 3040
Query 3300 AGTTTTCAACGTCAACTCTGTCAATGGTCCCAGGGATACCTATAAAACCCATGCTTGCAA 3359
||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||| |
Sbjct 3041 AGTTTTCAACGTCAACTCTATCAATGGTTCCAGGGATACCTATAAAACCCATGCTTGCTA 3100
Query 3360 AAATTGCTAAGGGGGTTCAAGAATTTTTTAACCTCTCCCAAGAAAAGGCCTTTACTTGTG 3419
||||||||||||| || ||||||||| || | |||| |||||| ||||| ||||||||||
Sbjct 3101 AAATTGCTAAGGGCGTCCAAGAATTTGTTGAGCTCTTCCAAGACAAGGCGTTTACTTGTG 3160
Query 3420 AATACAAATATGATGGCCAGCGCGCCCAGATCCATAAGTTACTTGATGGTACTGTGTGTA 3479
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||
Sbjct 3161 AATACAAATATGATGGTCAGCGCGCCCAGATCCATAAGTTACTTGATGGTACTGTGCGTA 3220
Query 3480 TCTTTTCTCGGAATGGGGACGAAACAAC-GTCCAGATTTCCGGATCTGGTTGATGTCATA 3538
|||| ||||||||||||||||||||||| | | |||||||||||||| ||||||||||||
Sbjct 3221 TCTTCTCTCGGAATGGGGACGAAACAACAG-CGAGATTTCCGGATCTTGTTGATGTCATA 3279
Query 3539 AAACAGTTTTCTTGCCCTGCCGCTGAGACATTCATGTTGGACGCAGAGGTGGTTGCCACT 3598
|||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||
Sbjct 3280 AAACAGTTTTCTTGCCCTATAGCTGAGACATTCATGTTGGACGCAGAGGTGGTTGCAACT 3339
Query 3599 GATAGAATAAATGGAAACAAACTCATGTCATTCCAAGAGTTATCAACAAGAGAGAGAGGG 3658
||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 3340 GATAGAAAAAATGGAAGCAAACTCATGTCATTCCAAGAGTTATCAACAAGAGAGAGAGGA 3399
Query 3659 AGCAAAGATGCTTTGATAACTACAGAAAGTATTAAGGTTGAAGTCTGCGTCTTCGTGTTT 3718
||||||||||||||| ||||||| ||||||||||||||||||||||||||||| ||||||
Sbjct 3400 AGCAAAGATGCTTTGGTAACTACCGAAAGTATTAAGGTTGAAGTCTGCGTCTTTGTGTTT 3459
Query 3719 GATATTATGTTTGTCAATGGAGAACAGCTGTTGGCTCTTCCCCTCCGTGAGAGACGAAGA 3778
||||||||||| | ||||||||||||||||||||||||||| |||||||||||| |||||
Sbjct 3460 GATATTATGTTCGGCAATGGAGAACAGCTGTTGGCTCTTCCTCTCCGTGAGAGAAGAAGA 3519
Query 3779 CGTCTAAAGGAGGTCTTCCCTGAGACTAGGCCAGGTTATCTTGAGTATGCTAAGGAAATA 3838
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 3520 CGTCTAAAGGAGGTCTTCCCTGAGACTAGGCCAGGTTATCTTGAATATGCTAAGGAAATT 3579
Query 3839 ACTGTGGGAGCAGAAGAAGCGTCTCTGAATAATCATGACACATTGAGTAGGATAAATGCT 3898
|| |||| |||||||||||| ||| |||||||||| ||||| |||||||| |||||||||
Sbjct 3580 ACAGTGGAAGCAGAAGAAGCTTCTTTGAATAATCAGGACACTTTGAGTAGAATAAATGCT 3639
Query 3899 TTTCTTGA-AGAAGCATTTCAGTCATCTTGTGAAGGAATCATGGTCAAGTCTTTAGATGT 3957
||| ||| ||||||||||||||||||||| |||||||||||||| ||||||||||||||
Sbjct 3640 TTT-TTGGGAGAAGCATTTCAGTCATCTTGCGAAGGAATCATGGTTAAGTCTTTAGATGT 3698
Query 3958 AAATGCTGGATACTGCCCCACAAAGCGCTCTGATTCATGGCTCAAGGTTAAGCGAGATTA 4017
|||| ||||||| |||||||||||| | ||||||||||||||||||||||||||||||
Sbjct 3699 TGATGCAGGATACTTCCCCACAAAGCGTTATGATTCATGGCTCAAGGTTAAGCGAGATTA 3758
Query 4018 TGTAGATGGATTGGGCGATACATTGGATTTAGTTCCTATTGGTGCTTGGTATGGCAATGG 4077
|||||||||||||||||| ||||| |||||||||||||| ||||||||| ||||||| ||
Sbjct 3759 TGTAGATGGATTGGGCGACACATTAGATTTAGTTCCTATAGGTGCTTGGCATGGCAACGG 3818
Query 4078 GAGAAAAGCAGGATGGTATAGTCCATTCCTTATGGCCTGCTTCAACCCTGAGACTGAAGA 4137
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 3819 GAGAAAAGCGGGATGGTATAGTCCATTCCTTATGGCCTGCTTCAACCCTGAGACTGAGGA 3878
Query 4138 ATTCCAGAGTGTCTGCCGTGTCATGTCTGGTTTTTCTGATGCCTTTTACATCGAGATGAA 4197
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 3879 ATTCCAGAGTGTCTGCCGTGTCATGTCTGGGTTTTCTGATGCCTTTTACATCGAGATGAA 3938
Query 4198 AGAATTCTACTC-GGAGGATAAGATCCTTGCGAAAAAGCCGCCTTACTACAGAACAGGGG 4256
|||| ||||||| || ||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 3939 AGAACTCTACTCAGG-GGATAAGATCCTTACGAAAAAGCCGCCTTACTACAGAACAGGGG 3997
Query 4257 AGACACCTGACATGTGGTTTTCCGCAGAGGTAGTTTGGGAAATCAGAGGTGCTGATTTCA 4316
| ||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||
Sbjct 3998 AAACACCTGACATGTGGTTTTCCGCAGAGGTTGTTTGGGAAATCAGAGGTGCAGATTTCA 4057
Query 4317 CAGTCTCGCCTGTTCACAGTGCCAG-TTTAGGTCTCGTCCATCCATCGCGAGGCATCTCT 4375
| ||||||||||||||||||||| | ||||||||||||||||||||| ||||| |||||
Sbjct 4058 CGGTCTCGCCTGTTCACAGTGCC-GCTTTAGGTCTCGTCCATCCATCCCGAGGTATCTCC 4116
Query 4376 GTTAGGTTTCCGAGATTTAT-CAGTAAAGTGACAGATAGAAATCCTGAAGAATGTAGTAC 4434
|||||||||||||||||||| | ||||||| ||||| |||||||| || ||||| || ||
Sbjct 4117 GTTAGGTTTCCGAGATTTATTC-GTAAAGTAACAGACAGAAATCCGGAGGAATGCAGCAC 4175
Query 4435 GGCTACAGATATCGCAGAGATGTTTCATGCTCAAACCAGAAAAATGAACATCACTTCTCA 4494
||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 4176 AGCTGCAGATATCGCAGAGATGTTTCATGCTCAAACCAGAAAAATGAACATCACCTCTCA 4235
Query 4495 ACATTAA 4501
||| |||
Sbjct 4236 ACAATAA 4242
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 178756420381
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5