BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G66740.1
Length=1055
Score E
Sequences producing significant alignments: (Bits) Value
Ahg315701 jgi|Araly1|315701|fgenesh1_pm.C_scaffold_2000734 848 0.0
Ahg494166 jgi|Araly1|494166|fgenesh2_kg.7__3599__AT5G38110.1 407 9e-113
> Ahg315701 jgi|Araly1|315701|fgenesh1_pm.C_scaffold_2000734
Length=585
Score = 848 bits (459), Expect = 0.0
Identities = 554/597 (93%), Gaps = 18/597 (3%)
Strand=Plus/Plus
Query 247 ATGAGTGCAATCAAAATCACCAACGTCGCTGTATTGC-ATAATCCTGCTCCTTTTGTTAG 305
||||||||||| || ||||||||||||||||| || | ||||||||||||||||||||||
Sbjct 1 ATGAGTGCAATTAACATCACCAACGTCGCTGTCTT-CGATAATCCTGCTCCTTTTGTTAG 59
Query 306 CCCTTTTCAGTTCGAGATTTCTTACGAGTGTTTGAATTCTCTCAAAGACGATTTGGAATG 365
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 60 CCCATTTCAGTTCGAGATTTCTTACGAGTGTTTGAATTCTCTCAAAGACGATTTGGAATG 119
Query 366 GAAGCTTATCTATGTAGGCTCAGCAGAAGATGAGACTTATGATCAACTTCTAGAGAGTGT 425
||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 120 GAAACTTATCTATGTAGGCTCAGCAGAAGATGAGACTTATGATCAACTTCTTGAGAGTGT 179
Query 426 GCTTGTAGGGCCTGTTAATGTTGGCAACTACCGCTTTGTATTTCAGGCTGATCCTCCGGA 485
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 180 GCTTGTAGGGCCTGTTAATGTTGGCAACTACCGCTTTGTATTGCAGGCTGATCCTCCGGA 239
Query 486 TCCATCAAAGATTC-AGGAGGAAGACATCATCGGTGTTACTGTGCTATTGTTGACATGTT 544
|||||||||||||| || ||||||||||||| ||||| ||||||||||||||||||||||
Sbjct 240 TCCATCAAAGATTCGAG-AGGAAGACATCATTGGTGTCACTGTGCTATTGTTGACATGTT 298
Query 545 CTTACATGGGTCAAGAGTTCTTGAGAGTTGGATATTACGTGAACAATGATTATGAGGATG 604
|||||||||||||||||||||| |||||||||||||||||||||||||| || |||||||
Sbjct 299 CTTACATGGGTCAAGAGTTCTTTAGAGTTGGATATTACGTGAACAATGACTACGAGGATG 358
Query 605 AGCAACTCAAGGAAGAGCCTCCAACTAAGGTTTTGATTGATAAAGTTCAGAGGAACATAC 664
||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||
Sbjct 359 AGCAACTCAAGGAAGAGCCACCAACTAAGGTTTTGATCGATAAAGTTCAGAGGAACATAC 418
Query 665 TTTCCGACAAACCTAGAGTTACTAAATTTCCTATAGATTTTCATCCAGAAGAAGAGCAGA 724
||||||||||||| |||||||||||||| |||||| ||||| |||||||||||||| |||
Sbjct 419 TTTCCGACAAACCGAGAGTTACTAAATTCCCTATAAATTTTAATCCAGAAGAAGAGGAGA 478
Query 725 CTGCTGCTACTGCCGCTCCTCCTGAA-CAATCTGATGAACAACAACCTAATGTCAATGGT 783
|||||||| || || | || ||| || ||||||||||||||||||||||||||||||
Sbjct 479 CTGCTGCTCCT-CC--TA-TC--GAAGCA-TCTGATGAACAACAACCTAATGTCAATGGT 531
Query 784 GAAGCTCAGGTTTTACCTGATCAGTCAGTAGAA-CCA-AA-ACCTGAGGAATCATGA 837
|||||||||||||| ||||||||| ||| | || ||| || ||| || ||||||||
Sbjct 532 GAAGCTCAGGTTTTGCCTGATCAGCCAGAA-AATCCAGAACACCA-AG-AATCATGA 585
> Ahg494166 jgi|Araly1|494166|fgenesh2_kg.7__3599__AT5G38110.1
Length=730
Score = 407 bits (220), Expect = 9e-113
Identities = 392/476 (82%), Gaps = 8/476 (2%)
Strand=Plus/Plus
Query 256 ATCAAAATCACCAACGTCGCTGTATTGCATAATCCTGCTCCTTTTGTTAGCCCTTTTCAG 315
||||| ||||| |||||| | || ||| | ||||| || || || || | || || |||
Sbjct 93 ATCAATATCACTAACGTCACCGTCTTGGACAATCCAGCGCCATTCGTGAATCCATTCCAG 152
Query 316 TTCGAGATTTCTTACGAGTGTTTGAATTCTCTCAAAGACGATTTGGAATGGAAGCTTATC 375
|||||||| |||||||| || |||| ||||||||||||||||||||||||||||||||||
Sbjct 153 TTCGAGATCTCTTACGAATGCTTGACTTCTCTCAAAGACGATTTGGAATGGAAGCTTATC 212
Query 376 TATGTAGGCTCAGCAGAAGATGAGACTTATGATCAACTTCTAGAGAGTGTGCTTGTAGGG 435
|| ||||| ||||| |||||||| || ||||||||| || | || ||||| ||||| ||
Sbjct 213 TACGTAGGATCAGCTGAAGATGAAACCTATGATCAAGTTTTGGAAAGTGTTCTTGTTGGT 272
Query 436 CCTGTTAATGTTGGCAACTACCGCTTTGTATTTCAGGCTGA-TCCTCCGGATCCATCAAA 494
|||||||| ||||| || ||||| ||||| || |||||||| || ||| ||||| | |||
Sbjct 273 CCTGTTAACGTTGGGAATTACCGATTTGTGTTACAGGCTGACTC-TCCAGATCCGTTAAA 331
Query 495 GATTCAG-GAGGAAGACATCATCGGTGTTACTGTGCTATTGTTGACATGTTCTTACATGG 553
||||| | |||||||| || || ||||| ||||||||||||||||| || || |||||||
Sbjct 332 GATTC-GTGAGGAAGATATTATTGGTGTAACTGTGCTATTGTTGACTTGCTCATACATGG 390
Query 554 GTCAAGAGTTC-TTGAGAGTTGGATATTACGTGAACAATGATTATGAGGATGAGCAACTC 612
||||||||| || |||||||| ||||| || |||||||| ||||| ||||| ||||||
Sbjct 391 ATCAAGAGTTTATT-AGAGTTGGCTATTATGTCAACAATGACTATGATGATGAACAACTC 449
Query 613 AAGGAAGAGCCTCCAACTAAGGTTTTGATTGATAAAGTTCAGAGGAACATACTTTCCGAC 672
| |||||||||||| || |||||||||||| ||||||| || ||||||||||| | |||
Sbjct 450 AGGGAAGAGCCTCCTACCAAGGTTTTGATTAATAAAGTCCAAAGGAACATACTCACGGAC 509
Query 673 AAACCTAGAGTTACTAAATTTCCTAT-AGATTTTCATCCAGAAGAAGAGCAGACTG 727
|||||| |||| ||||| || ||| | | | |||||||| | || |||||| |||
Sbjct 510 AAACCTCGAGTCACTAAGTTCCCTGTCA-ACTTTCATCCTGCGGATGAGCAGGCTG 564
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 39266604510
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5