BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G66750.1
Length=1345
Score E
Sequences producing significant alignments: (Bits) Value
Ahg475772 jgi|Araly1|475772|fgenesh2_kg.2__902__AT1G66750.1 1670 0.0
Ahg356893 jgi|Araly1|356893|fgenesh1_pg.C_scaffold_8000680 302 6e-81
Ahg939525 jgi|Araly1|939525|scaffold_600069.1 276 3e-73
> Ahg475772 jgi|Araly1|475772|fgenesh2_kg.2__902__AT1G66750.1
Length=1072
Score = 1670 bits (904), Expect = 0.0
Identities = 1017/1073 (95%), Gaps = 2/1073 (0%)
Strand=Plus/Plus
Query 49 AATCTAAACCCAATGTCGAAATCCGGCGATAATCAACCAGTTGATAGATACCTCCGCCGT 108
|||| ||||||||||||||||||| ||| || |||||||| ||| |||| |||||||||
Sbjct 1 AATCAAAACCCAATGTCGAAATCCAACGAAAACCAACCAGTGGATCGATATCTCCGCCGT 60
Query 109 CAAATCCTCGGAGAAGGAACATACGGTGTCGTTTACAAAGCCACCGACACAAAGACTGGG 168
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 61 CAAATCCTCGGAGAAGGAACATACGGTGTCGTTTACAAAGCCACAGACACAAAGACTGGA 120
Query 169 AAAACTGTAGCAGTGAAGAAGATAAGATTAGGAAACCAAAAGGAAGG-AGTAAATTTCAC 227
|||||||||||||||||||||||||||||||||||| |||||||||| | ||||||||||
Sbjct 121 AAAACTGTAGCAGTGAAGAAGATAAGATTAGGAAACGAAAAGGAAGGCA-TAAATTTCAC 179
Query 228 AGCTTTAAGAGAAATCAAGCTACTAAAAGAGCTGAATCATCCACATATCGTTGAACTCAT 287
|||||| ||||| || |||||| |||||||||||||||||||||| || |||||||||||
Sbjct 180 AGCTTTGAGAGAGATAAAGCTATTAAAAGAGCTGAATCATCCACACATTGTTGAACTCAT 239
Query 288 TGATGCTTTCCCTCACGATGGAAGTTTGCATCTAGTTTTTGAGTATATGCAAACAGATTT 347
||||||||| |||||| |||||||||||||| |||||||||||||||||||||| |||||
Sbjct 240 TGATGCTTTTCCTCACAATGGAAGTTTGCATTTAGTTTTTGAGTATATGCAAACGGATTT 299
Query 348 AGAAGCAGTGATTCGTGATCGTAATATCTTTTTATCTCCTGGTGATATTAAGTCTTATAT 407
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 300 AGAAGCAGTGATTCGTGATCGTAATATCTTTTTATCTCCTGGTGATATTAAGTCTTATAT 359
Query 408 GTTGATGACTTTGAAGGGTTTAGCTTATTGTCATAAGAAATGGGTTCTTCACAGGGATAT 467
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 360 GTTGATGACTTTGAAGGGTTTAGGTTATTGTCATAAGAAATGGGTTCTTCACAGGGATAT 419
Query 468 GAAGCCGAATAATTTGTTGATTGGAGAGAATGGTTTGTTGAAGTTGGCTGATTTTGGTTT 527
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 420 GAAGCCAAATAATTTGTTGATTGGAGAGAATGGTTTGTTGAAGTTGGCTGATTTTGGTTT 479
Query 528 GGCGAGGTTGTTTGGGAGTCCGAATCGGAGGTTTACTCATCAGGTATTTGCTACATGGTA 587
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 480 GGCGAGGTTGTTTGGGAGTCCGAATCGGAGGTTTACTCATCAGGTATTTGCTACATGGTA 539
Query 588 CAGAGCGCCTGAGTTACTGTTTGGGAGTCGACAGTATGGAGCAGGAGTTGATGTTTGGGC 647
||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||
Sbjct 540 CAGAGCGCCTGAGTTGTTATTTGGGAGTCGACAGTATGGAGCAGGAGTTGATGTTTGGGC 599
Query 648 TGCAGGCTGTATTTTTGCTGAGTTACTACTTCGTAGACCATTTCTTCCGGGTTCTACTGA 707
|||||| ||||| ||||||||| || |||||||| |||||||||| ||||||||||||||
Sbjct 600 TGCAGGTTGTATCTTTGCTGAGCTATTACTTCGTCGACCATTTCTACCGGGTTCTACTGA 659
Query 708 GATTGATCAACTTGGAAAGATCTTTCAAGCGTTTGGTACTCCAGTACCTTCCCAATGGTC 767
||||||||||||||||||||||||||| || ||||| |||||||||||||| ||||||||
Sbjct 660 GATTGATCAACTTGGAAAGATCTTTCAGGCTTTTGGAACTCCAGTACCTTCGCAATGGTC 719
Query 768 TGACATGATCTATCTCCCAGACTACATGGAATTCTCCTATACACCCGCTCCACCATTACG 827
||| ||||||||||||||||||||| |||| ||||| |||||||| ||||||||||||||
Sbjct 720 TGATATGATCTATCTCCCAGACTACTTGGAGTTCTCTTATACACCTGCTCCACCATTACG 779
Query 828 TACCATTTTCCCTATGGCAAGTGATGACGCTTTGGATCTTCTAGCAAAAATGTTCATCTA 887
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 780 TACCATTTTCCCTATGGCAAGCGATGACGCTTTGGATCTTCTAGCAAAAATGTTCATCTA 839
Query 888 CGACCCACGTCAAAGGATCACAATACAACAAGCTTTAGACCACAGGTATTTCTCGTCTTC 947
||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 840 CGACCCACGACAAAGGATCACAATACAGCAAGCTTTAGACCACAGGTATTTCTCGTCTTC 899
Query 948 TCCATCACCAACTGAGCCAGGGAAGCTTCAGATTCCAGCTTCCAAAGGAGACGCACTCGA 1007
|||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||
Sbjct 900 TCCATCACCAACTGAGCCAGGGAAGCTTCAGATTCCGGCTTCAAAAGGAGACGCACTCGA 959
Query 1008 ACCAAAGGCCTCCGAGCAAAACCAACATGGAAATAGCCCAGCGGTACTGTCTCCTCCTGG 1067
||||||||||||||||||||||||||| | ||||||||| || |||||||| ||||||||
Sbjct 960 ACCAAAGGCCTCCGAGCAAAACCAACACGCAAATAGCCCGGCCGTACTGTCACCTCCTGG 1019
Query 1068 TAAAATGAGGAGAGTGATGGGTCCTGAAGGATTCACTTGAGAAGATGATGTTT 1120
||||||||||||||| ||||||||||| |||||||||||||||||| ||||||
Sbjct 1020 TAAAATGAGGAGAGTAATGGGTCCTGAGGGATTCACTTGAGAAGATAATGTTT 1072
> Ahg356893 jgi|Araly1|356893|fgenesh1_pg.C_scaffold_8000680
Length=483
Score = 302 bits (163), Expect = 6e-81
Identities = 186/197 (94%), Gaps = 2/197 (1%)
Strand=Plus/Plus
Query 605 TGTTTGGGAGTCGACAGTATGGAGCAGGAGTTGATGTTTGGGCTGCAGGCTGTATTTTTG 664
||||||| ||||||||||||||||||||||||||||| ||||||||||||||||| ||||
Sbjct 140 TGTTTGGTAGTCGACAGTATGGAGCAGGAGTTGATGTCTGGGCTGCAGGCTGTATCTTTG 199
Query 665 CTGAGTTACTACTTCGTAGACCATTTCTTCCGGGTTCTACTGAGATTGATCAACTT-GGA 723
||||| || ||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 200 CTGAGCTATTACTTCGTAGACCATTTCTTCCGGGTTCTACTGAGATTGATCAACTTAGG- 258
Query 724 AAGATCTTTCAAGCGTTTGGTACTCCAGTACCTTCCCAATGGTCTGACATGATCTATCTC 783
|||||||||||||| ||||| |||||||||||||| ||||||| ||||||||||||||||
Sbjct 259 AAGATCTTTCAAGCCTTTGGAACTCCAGTACCTTCTCAATGGTATGACATGATCTATCTC 318
Query 784 CCAGACTACATGGAATT 800
|||||||||||||||||
Sbjct 319 CCAGACTACATGGAATT 335
> Ahg939525 jgi|Araly1|939525|scaffold_600069.1
Length=521
Score = 276 bits (149), Expect = 3e-73
Identities = 170/180 (94%), Gaps = 2/180 (1%)
Strand=Plus/Plus
Query 622 TATGGAGCAGGAGTTGATGTTTGGGCTGCAGGCTGTATTTTTGCTGAGTTACTACTTCGT 681
|||||||||||||||||||| ||||||||||||||||| ||||||||| || ||||||||
Sbjct 175 TATGGAGCAGGAGTTGATGTCTGGGCTGCAGGCTGTATCTTTGCTGAGCTATTACTTCGT 234
Query 682 AGACCATTTCTTCCGGGTTCTACTGAGATTGATCAACTT-GGAAAGATCTTTCAAGCGTT 740
||||||||||||||||||||||||||||||||||||||| |||| |||||||||||| ||
Sbjct 235 AGACCATTTCTTCCGGGTTCTACTGAGATTGATCAACTTAGGAA-GATCTTTCAAGCCTT 293
Query 741 TGGTACTCCAGTACCTTCCCAATGGTCTGACATGATCTATCTCCCAGACTACATGGAATT 800
||| |||||||||||||| ||||||| |||||||||||||||||||||||||||||||||
Sbjct 294 TGGAACTCCAGTACCTTCTCAATGGTATGACATGATCTATCTCCCAGACTACATGGAATT 353
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 50322250440
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5