BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G66760.2
Length=1811
Score E
Sequences producing significant alignments: (Bits) Value
Ahg475774 jgi|Araly1|475774|fgenesh2_kg.2__904__AT1G66760.2 2540 0.0
Ahg944975 jgi|Araly1|944975|scaffold_701204.1 278 1e-73
> Ahg475774 jgi|Araly1|475774|fgenesh2_kg.2__904__AT1G66760.2
Length=1674
Score = 2540 bits (1375), Expect = 0.0
Identities = 1538/1618 (95%), Gaps = 6/1618 (0%)
Strand=Plus/Plus
Query 59 TTATATCAAAATCATAAAGCTAAATAAATACGACACAACTTCCAACATTTTCTCTAACCA 118
||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||
Sbjct 36 TTATATCAAAATCATAAAGCTAAATAAATACGACACAACTTCCCACATTTTCTCTCTCCA 95
Query 119 GAAAGaaaaaaaaaaTGAAGAAGAGTATCGAAACTCCGTTATTGTTGAACACCAAACAAT 178
||||| |||||||||||||||||||||||||||||| ||| ||||||||||||||||||
Sbjct 96 GAAAG--AAAAAAAATGAAGAAGAGTATCGAAACTCCATTACTGTTGAACACCAAACAAT 153
Query 179 CACAAGACGAAGATAAAGAAAAAATAAGATGGGAGAAGATGAAGAAAGTTGCTTCAATGG 238
||||||| ||||| || ||||| |||||||||||||||| |||||||||||||||||||
Sbjct 154 CACAAGAAGAAGAGAACGAAAAGCTAAGATGGGAGAAGATAAAGAAAGTTGCTTCAATGG 213
Query 239 CTGCTCCAATGGTCGCCGTGAACATGTCTCAATACCTTCTTCAAGCAACTTCTACAATGA 298
|||||||||||||||| |||||||||||||| | |||||||||||||||||| |||||||
Sbjct 214 CTGCTCCAATGGTCGCTGTGAACATGTCTCAGTTCCTTCTTCAAGCAACTTCAACAATGA 273
Query 299 TCGTCGGTCACCGGAGCGAACTCGCTCTCGCCGGAATCGCTCTAGGAAGCTCCTTTGCTA 358
|||||||||||||||| |||||||||||||||||||| ||||| ||||||||||||||||
Sbjct 274 TCGTCGGTCACCGGAGTGAACTCGCTCTCGCCGGAATAGCTCTCGGAAGCTCCTTTGCTA 333
Query 359 ATGTTACCGGCTTTGGTGTTCTTTTTGGACTTTCAGGTTCATTGGAAACACTATGTGGTC 418
||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||
Sbjct 334 ATGTTACCGGCTTTGGTGTTCTTTTTGGACTTTCAGGTTCATTAGAAACTTTATGTGGTC 393
Query 419 AAGCATATGGAGCAAAACAATATCACAAGCTTGGATCTTACACTTTCACTTCAATAGTTT 478
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 394 AAGCATATGGAGCAAAACAATATCACAAGCTTGGTTCTTACACTTTCACTTCAATAGTTT 453
Query 479 TCCTTTTGATTATCTCTGTTCCGATTTCGATTCTTTGGATGTTCATGAACCAGATCTTGC 538
|||| |||||||||||||| |||||||| |||||||||||||||||||||||||||||||
Sbjct 454 TCCTCTTGATTATCTCTGTCCCGATTTCAATTCTTTGGATGTTCATGAACCAGATCTTGC 513
Query 539 TGTTGCTTCATCAAGATCCTCAAATAGCAGAGTTAGCTGGTGTGTACTGTCTCTGGCTGG 598
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 514 TTTTGCTTCATCAAGATCCTCAAATAGCAGAGTTAGCTGGTGTGTACTGTCTCTGGCTTG 573
Query 599 TACCAGCTTTATTCGGTTACTCTGTTCTCGAGTCGTTGGTTCGATATTTTCAGTCACAAA 658
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 574 TACCGGCTTTATTCGGTTACTCTGTTCTCGAGTCGTTGGTTCGATATTTTCAGTCACAAA 633
Query 659 GCTTGATTTATCCAATGGTCTTGAGCTCTCTAGCTGCTCTGTCTTTCCATGTTCCTCTCT 718
||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 634 GCTTGATCTATCCAATGGTCTTGAGCTCTTTAGCTGCTCTGTCTTTCCATGTTCCTCTCT 693
Query 719 GTTGGCTAATGGTTCATAAATTTGATTTTGGAGCCAAAGGAGCGGCTGCGTCTATCGGTA 778
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 694 GTTGGCTAATGGTTCATAAATTTGATTTTGGAGCCAAAGGAGCGGCTGTGTCTATCGGTA 753
Query 779 TCTCTTACTGGCTCAACGCGGTTTTTCTTTGGGTTTATATGAAACGCTCTAGTCGTTGTG 838
||||||||||||||| ||||| ||| |||||||||||||||||||||||||| |||||||
Sbjct 754 TCTCTTACTGGCTCACCGCGGCTTTCCTTTGGGTTTATATGAAACGCTCTAGCCGTTGTG 813
Query 839 TCGAAACGCGGATTTATATGTCCAAGGATGTTTTTGTTCATACAAATATCTTCTTTCAAT 898
||||||||||||||||||||| || ||||| ||||||||||||||||||||||||||||
Sbjct 814 CCGAAACGCGGATTTATATGTCGAAAGATGTGTTTGTTCATACAAATATCTTCTTTCAAT 873
Query 899 TTGCCATTCCTTCTGCAATGATGTGTTGCCTTGAGTGGTTAGCTTTCGAGGTCATTACTT 958
|||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 874 TTGCGGTTCCTTCTGCAATGATGTGTTGCCTTGAGTGGTTAGCTTTCGAGGTGATTACTT 933
Query 959 TGCTGTCTGGTCTTCTACCCAACTCAAAGCTCGAAACATCGGTTATTTCGATTTGCCTCA 1018
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 934 TGCTGTCTGGTCTTCTACCCAACTCAAAGCTCGAAACTTCGGTTATTTCGATTTGCCTCA 993
Query 1019 CGACCTCTTCATTGCATTACAATCTAGTAAATGGAATTGGTGATGCAGCAAGCACCAATG 1078
| |||||||||||||| |||||||| ||||||||||| |||||||||||||| |||||||
Sbjct 994 CAACCTCTTCATTGCACTACAATCTGGTAAATGGAATCGGTGATGCAGCAAGTACCAATG 1053
Query 1079 TGGCTAATGAGCTAGGAGCTGGGAATCCGCGAGGGGCTCGTGATTCTGCTGCGGCTGCAA 1138
|||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1054 TGGCAAATGAGCTAGGAGCTGGGAATCCGCGAGGGGCGCGTGATTCTGCTGCGGCTGCAA 1113
Query 1139 TCATAATTGCAGCTGTTGAGTCAGTTATTGTGAGCTCTAGTCTGTTCTTGTCTCGCAGTG 1198
|||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||
Sbjct 1114 TCATAATTGCAGCTGTTGAGTCAGTTGTTGTGAGCTCTAGTCTCTTCTTGTCTCGCAGTG 1173
Query 1199 TGTGGCCTTATGCATATAGCAATGTGGAGGAAGTAATTAGTTATGTGACTGATATCACTC 1258
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1174 TGTGGCCTTATGCATATAGCAATGTGGAGGAAGTAATTAGTTATGTGACTGATATCACTC 1233
Query 1259 CTATTCTTTGTATCTCAATCCTCATGGACAGCTTCTTGACCGTCCTCTCCGGGATTGTGA 1318
| ||||||||||||||||||||||||||||| |||||||||||||| |||||| ||||||
Sbjct 1234 CCATTCTTTGTATCTCAATCCTCATGGACAGTTTCTTGACCGTCCTTTCCGGGGTTGTGA 1293
Query 1319 GAGGAACAGGGTGGCAAAAAATTGGAGCTTATGTGAACATAACCTCTTATTATGTCATTG 1378
||||||| |||||||| ||||||||||| ||||| |||||||||||||||||| ||||||
Sbjct 1294 GAGGAACCGGGTGGCAGAAAATTGGAGCCTATGTAAACATAACCTCTTATTATCTCATTG 1353
Query 1379 GTATTCCTGTTGGACTTCTATTGTGTTTTCATCTTCACTTCAATGGGAAAGGACTTTGGG 1438
||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1354 GTATTCCCGTTGGACTTCTATTGTGTTTTCATCTCCACTTCAATGGGAAAGGACTTTGGG 1413
Query 1439 CTGGTTTAGTCACAGGATCAACATTACAAACTCTAATCCTATTTCTTGTTATTGGATTTA 1498
||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||
Sbjct 1414 CTGGTTTAGTCACAGGATCAACACTACAAACTCTAATCCTCTTTCTTGTTATTGGATTTA 1473
Query 1499 CCAATTGGAGCAAAGAGGCAATTAAGGCTAGGGAGAGAATTGGTGATGAGAAAGTTTGGA 1558
|||||||||| ||||||||||| ||||||||||||||||| ||||||||||| |||||||
Sbjct 1474 CCAATTGGAGGAAAGAGGCAATCAAGGCTAGGGAGAGAATAGGTGATGAGAAGGTTTGGA 1533
Query 1559 GACATGACTCATTGCTTAATTGAAGaaaaaaaGAAATACAAACTTTTGGGGGATTTTGAT 1618
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1534 GACATGACTCATTGCTTAATTGAAGAAAAAAAGAAATACAAACTTT-GGGGGATTTTGAT 1592
Query 1619 TGCTTCtttttttGTGTGTGTTTGTGCAATAACCTTCAGTTGATTGTAATTTATATTG 1676
||||| ||| |||||| || || |||||| ||||| ||||||||||||||| ||||||
Sbjct 1593 TGCTT-TTTGTTTGTGAGT-TT-GTGCAAGAACCTGCAGTTGATTGTAATTGATATTG 1647
> Ahg944975 jgi|Araly1|944975|scaffold_701204.1
Length=280
Score = 278 bits (150), Expect = 1e-73
Identities = 188/206 (91%), Gaps = 3/206 (1%)
Strand=Plus/Plus
Query 541 TTGCTTCATCAAGATCCTCAAATAGCAGAGTTAGCTGGTGTGTACTGTCTCTGGCTGGTA 600
||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||
Sbjct 76 TTGCTTCATCAAGATCC-CAAATAGCAGAGTTAGCTGGTGTGTACTGTCTCTGGCTCGTA 134
Query 601 CCAGCTTTATTCGGTTACTCTGTTCTCGAGTCGTTGGTTCGATATTTTCAGTCACAAAGC 660
|| |||||||||||||| | |||||| ||||| ||||||||||||||||||||||||||
Sbjct 135 CCGGCTTTATTCGGTTAATTTGTTCTGGAGTCATTGGTTCGATATTTTCAGTCACAAAGT 194
Query 661 TT--GATTTATCCAATGGTCTTGAGCTCTCTAGCTGCTCTGTCTTTCCATGTTCCTCTCT 718
|| ||| ||||||| |||||||||||||||| ||||||||||||||||||||||| |
Sbjct 195 TTTTGATCTATCCAAGGGTCTTGAGCTCTCTATCTGCTCTGTCTTTCCATGTTCCTAAAT 254
Query 719 GTTGGCTAATGGTTCATAAATTTGAT 744
||| |||||||||| |||||||||||
Sbjct 255 GTTAGCTAATGGTTGATAAATTTGAT 280
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 67991087325
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5