BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G66770.1
Length=786
Score E
Sequences producing significant alignments: (Bits) Value
Ahg925890 jgi|Araly1|925890|scaffold_201451.1 1136 0.0
Ahg922220 jgi|Araly1|922220|scaffold_103501.1 516 1e-145
Ahg925784 jgi|Araly1|925784|scaffold_201345.1 158 7e-38
> Ahg925890 jgi|Araly1|925890|scaffold_201451.1
Length=826
Score = 1136 bits (615), Expect = 0.0
Identities = 729/786 (93%), Gaps = 0/786 (0%)
Strand=Plus/Plus
Query 1 ATGGTGCATGAACAGTTGAATCTTATTCGGAAGATTGTTGGTATATTAGGAAACTTCATC 60
||||| |||| ||||||||||||||||||||||||||| || ||||||||||||||||||
Sbjct 21 ATGGTACATGCACAGTTGAATCTTATTCGGAAGATTGTAGGAATATTAGGAAACTTCATC 80
Query 61 TCTCTATGTTTGTTTCTATCGCCAACGCCAACGTTTATACACATAGTGAAAAAGAAGTCA 120
||||||||||||||||| || ||||||||||||||| |||||||||||||||| || |||
Sbjct 81 TCTCTATGTTTGTTTCTGTCACCAACGCCAACGTTTGTACACATAGTGAAAAAAAAATCA 140
Query 121 GTGGAAAAATACTCACCATTGCCATATTTAGCGACTCTCCTAAACTGTTTGGTTCGTGCT 180
|||||||||||||||||| ||||||||||||| ||||||||||||||| ||||||| |||
Sbjct 141 GTGGAAAAATACTCACCAATGCCATATTTAGCCACTCTCCTAAACTGTATGGTTCGGGCT 200
Query 181 CTTTATGGACTTCCTATGGTTCATCCTGATAGCACCTTGCTCGTTACAATAAGCGGTATA 240
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 201 CTTTATGGACTTCCTATGGTTCATCCTGATAGCACCTTGCTCGTTACAATCAGCGGTATA 260
Query 241 GGAATCACGATCGAAATCGTTTTCCTTACAATCTTTTTTGTATTTTGTGGTCGTCAACAA 300
|||||| ||||||||||||||||||||| |||||||| || ||||||| ||||||||||
Sbjct 261 GGAATCGTGATCGAAATCGTTTTCCTTACCATCTTTTTCGTTTTTTGTGATCGTCAACAA 320
Query 301 CATCGGTTGGTAATATCCGCTGTTTTAACCGTTCAAGTTGTGTTTGTGGCTACCCTTGCG 360
||||||||||||||||||||||||||||||||||||| || |||||||||||| ||||||
Sbjct 321 CATCGGTTGGTAATATCCGCTGTTTTAACCGTTCAAGCTGCGTTTGTGGCTACTCTTGCG 380
Query 361 GTTTTGGTCTTAACTCTCGAACACACTACCGATCAACGGACGATAAGCGTTGGGATTGTA 420
|||||||| ||||| ||||||||||||||||| |||||||| |||||||||||||||||
Sbjct 381 GTTTTGGTATTAACCCTCGAACACACTACCGAACAACGGACAATAAGCGTTGGGATTGTT 440
Query 421 TCTTGCGTTTTCAACGCTATGATGTATGCTTCTCCATTGTCTGTCATGAAAATGGTAATA 480
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 441 TCTTGCGTTTTCAACGCTATGATGTATGCTTCTCCATTGTCCGTCATGAAAATGGTAATA 500
Query 481 AAAACAAAAAGTTTGGAGTTCATGCCGTTTTTGTTATCGGTAGTTGGTTTTCTAAACGCA 540
|||||||||||||| ||||||||||||||||||||||| |||||| ||||| |||| |||
Sbjct 501 AAAACAAAAAGTTTAGAGTTCATGCCGTTTTTGTTATCCGTAGTTAGTTTTATAAATGCA 560
Query 541 GGTGTTTGGACAATTTATGGCTTTGTGCCTTTTGATCCATTCCTGGCTATACCAAATGGG 600
||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||
Sbjct 561 GGTGTTTGGACAATTTATGGCTTTGTGCCTTTTGATCCATTTTTGGCTATTCCAAATGGG 620
Query 601 ATTGGGTGTGTTTTTGGACTAGTACAGTTAATATTGTATGGTACCTACTACAAATCTACC 660
||||||||||| |||||||||||||| ||||||||||||||||||||||| |||| |||
Sbjct 621 ATTGGGTGTGTGTTTGGACTAGTACAATTAATATTGTATGGTACCTACTATGAATCCACC 680
Query 661 AAAGGGATAATGGAGGAAAGGAAGAACCGACTCGGTTACGTTGGTGAAGTCGGATTATCC 720
||||||||||||| |||||||||| | |||||||| |||||||||||||| || |||||
Sbjct 681 AAAGGGATAATGGCGGAAAGGAAGGAGCGACTCGGCTACGTTGGTGAAGTTGGGTTATCT 740
Query 721 AATGCGATCGCTCAAACTGAACCCGAGAACATCCCATATTTAAACAAAAGAGTTAGCGGC 780
| |||||||| |||||| ||||| ||||||||| ||||||| ||||||||||||| |||
Sbjct 741 ATTGCGATCGGTCAAACGGAACCTGAGAACATCGCATATTTCAACAAAAGAGTTAACGGT 800
Query 781 GTTTGA 786
||||||
Sbjct 801 GTTTGA 806
> Ahg922220 jgi|Araly1|922220|scaffold_103501.1
Length=473
Score = 516 bits (279), Expect = 1e-145
Identities = 415/480 (86%), Gaps = 11/480 (2%)
Strand=Plus/Plus
Query 118 TCAGTGGAAAAATACTCACCATTGCCATATTTAGCGACTCTCCTAAACTGTTTGGTTCGT 177
|||||||| |||||||||||| |||||||||| || |||||| |||| ||||| |||||
Sbjct 1 TCAGTGGAGAAATACTCACCAATGCCATATTTGGCCACTCTCATAAAGTGTTTCGTTCGA 60
Query 178 GCTCTTTATGGACTTCCTATGGTTCATCCTGATAGCACCTTGCTCGTTACAATAAGCGGT 237
||||| || |||||||||||||| || ||||| ||||| ||| ||||||||||||| |||
Sbjct 61 GCTCTATACGGACTTCCTATGGTGCACCCTGACAGCACATTGGTCGTTACAATAAGTGGT 120
Query 238 ATAGGAATCACGATCGAAATCGTTTTCCTTA-CAATCTTTTT-TGTATTTTGTGGTCGTC 295
| ||| ||| |||||||||||||||||||| | || ||||| | | |||||| | || |
Sbjct 121 AGAGGGATCGTGATCGAAATCGTTTTCCTTATC-ATATTTTTCT-TGTTTTGTAGCCGCC 178
Query 296 AACAACATCGGTTGGTAATATCCGCTGTTTTAACCGTTCAAGTTGTGTTTGTGGCTACCC 355
|| || | || ||||||||||| ||||||||| | ||| |||| ||||||||||||| ||
Sbjct 179 AA-AA-A-CGTTTGGTAATATCAGCTGTTTTAGCGGTTGAAGTCGTGTTTGTGGCTATCC 235
Query 356 TTGCGGTTTTGGTCTTAACTCTCGAACACACTACCGATCAACGGACGA-TAAGCGTTGGG 414
| || ||||||||||||||||| ||||| | |||||| | ||| || | | |||||||||
Sbjct 236 TCGCTGTTTTGGTCTTAACTCTTGAACAAAGTACCGAGCGACGAAC-AGTGAGCGTTGGG 294
Query 415 ATTGTATCTTGCGTTTTCAACGCTATGATGTATGCTTCTCCATTGTCTGTCATGAAAATG 474
||||||| |||| |||||||| | ||||||||||||||||||||||||||||||||||||
Sbjct 295 ATTGTATGTTGCATTTTCAACTCGATGATGTATGCTTCTCCATTGTCTGTCATGAAAATG 354
Query 475 GTAATAAAAACAAAAAGTTTGGAGTTCATGCCGTTTTTGTTATCGGTAGTTGGTTTTCTA 534
||||||||||||||||||||||||||||||||| |||||||||| || | ||||||||||
Sbjct 355 GTAATAAAAACAAAAAGTTTGGAGTTCATGCCGCTTTTGTTATCAGTTGCTGGTTTTCTA 414
Query 535 AACGCAGGTGTTTGGACAATTTATGG-CTTTGTGCCTTTTGATCCATTCCTGGCTATACC 593
|| ||||||||||||||||||||||| ||| ||||||| ||||||||| ||| ||||||
Sbjct 415 AATGCAGGTGTTTGGACAATTTATGGTCTT-GTGCCTTAAGATCCATTCATGGTTATACC 473
> Ahg925784 jgi|Araly1|925784|scaffold_201345.1
Length=635
Score = 158 bits (85), Expect = 7e-38
Identities = 97/103 (94%), Gaps = 0/103 (0%)
Strand=Plus/Plus
Query 46 TTAGGAAACTTCATCTCTCTATGTTTGTTTCTATCGCCAACGCCAACGTTTATACACATA 105
|||||||| ||||||||||||||||||||||| || ||||||||||||||| ||||||||
Sbjct 1 TTAGGAAATTTCATCTCTCTATGTTTGTTTCTGTCACCAACGCCAACGTTTGTACACATA 60
Query 106 GTGAAAAAGAAGTCAGTGGAAAAATACTCACCATTGCCATATT 148
||||||||||||||||||||||||| ||||||| |||||||||
Sbjct 61 GTGAAAAAGAAGTCAGTGGAAAAATTCTCACCAATGCCATATT 103
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 29011539837
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5