BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G66780.1
Length=1458
Score E
Sequences producing significant alignments: (Bits) Value
Ahg951906 jgi|Araly1|951906|scaffold_24700001.1 2100 0.0
Ahg925891 jgi|Araly1|925891|scaffold_201452.1 1953 0.0
Ahg907722 jgi|Araly1|907722|Al_scaffold_0002_803 1234 0.0
Ahg925784 jgi|Araly1|925784|scaffold_201345.1 671 0.0
> Ahg951906 jgi|Araly1|951906|scaffold_24700001.1
Length=1497
Score = 2100 bits (1137), Expect = 0.0
Identities = 1320/1409 (94%), Gaps = 9/1409 (1%)
Strand=Plus/Plus
Query 1 ATGGAAAATGGTTTCTCGTTGGTGCCCAaagaagaggaagaag-a--agaagaTTATAGT 57
|||||||| || |||||||||||||| |||||||||||||||| | |||||||| |||
Sbjct 23 ATGGAAAAGGGCTTCTCGTTGGTGCCTAAAGAAGAGGAAGAAGAAGGAGAAGATTGTAG- 81
Query 58 A-ATGAGAAATCTGAAGATCAGACGAGTTATTATTTGTCAACAGAGATGATGAAGAAGGT 116
| |||||||||||||||| ||| |||||||||| ||||||| ||||||||||||||||||
Sbjct 82 AGATGAGAAATCTGAAGACCAGTCGAGTTATTACTTGTCAATAGAGATGATGAAGAAGGT 141
Query 117 AAGCTTCATGGCTGCACCAATGGTGGCTGTGGCTGCTTCTCAATACCTCCTTCAAGTTAT 176
||||| ||||||||| |||||||||||||||||||||||||| |||||||||||||||||
Sbjct 142 AAGCTCCATGGCTGCTCCAATGGTGGCTGTGGCTGCTTCTCAGTACCTCCTTCAAGTTAT 201
Query 177 CTCCATTGTTATGGCTGGTCACTTGGACGAGCTTTCTCTCTCAGCCGTTGCTATTGCCAC 236
||||||||||||||| ||||||||||||||||| |||||||| ||||||||||| || ||
Sbjct 202 CTCCATTGTTATGGCCGGTCACTTGGACGAGCTCTCTCTCTCCGCCGTTGCTATCGCTAC 261
Query 237 TTCTCTTACCAATGTCACCGGCTTCAGCCTCATCTTTGGATTGGCAGGTGCGTTAGAGAC 296
|||||||||||| |||||||||||||||||| ||||||||||||||||||| ||||||||
Sbjct 262 TTCTCTTACCAACGTCACCGGCTTCAGCCTCCTCTTTGGATTGGCAGGTGCATTAGAGAC 321
Query 297 ACTGTGTGGTCAAGCTTTTGGAGCTGGGCAATTTAGGAATA-TCAGTGCATACACTTACG 355
|||||||||||||||||||||||||| |||||||||||| | |||||||||| |||||||
Sbjct 322 ACTGTGTGGTCAAGCTTTTGGAGCTGAGCAATTTAGGAA-AGTCAGTGCATATACTTACG 380
Query 356 GCTCAATGCTATGTCTTCTCTTGGTCTGTTTCCCAATCTCACTTTTGTGGGTTTTTATGG 415
||||||||||||||||||||||| ||||||| |||||||||||||||||||| |||||||
Sbjct 381 GCTCAATGCTATGTCTTCTCTTGTTCTGTTTTCCAATCTCACTTTTGTGGGTGTTTATGG 440
Query 416 ACAAACTCTTGGAGCTTTTCCATCAAGATCCTCTTATCTCTCAATTAGCTTGTAGATACT 475
|||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||| |
Sbjct 441 ACAAACTCTTGGAGCTTTTCCATCAAGATCCTCTCATCTCTCAACTAGCTTGTAGATATT 500
Query 476 CAATCTGGCTCATACCGGCTTTATTCGGATACTCTGTTCTTCAATCTATGACTCGATTTT 535
| |||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 501 CGATCTGGCTTATACCGGCTTTATTCGGATACTCTGTTCTTCAATCTATGACTCGGTTTT 560
Query 536 TCCAGTCACAAGGATTGGTTCTACCTCTCTTCTTGAGCTCTCTTGGAGCTCTCTTTTTTC 595
|||||||||||||||||||||| |||||||||||||||||||| |||||||||| |||||
Sbjct 561 TCCAGTCACAAGGATTGGTTCTTCCTCTCTTCTTGAGCTCTCTCGGAGCTCTCTGTTTTC 620
Query 596 ACGTTCCCTTTTCG-TGGCTTCTTGTCTATAAACTGAGATTCGGAATCGTCGGCGCCGCT 654
|| ||||||||| | |||||||| ||||||||||||||||| |||||||||||||| |||
Sbjct 621 ACATTCCCTTTT-GTTGGCTTCTAGTCTATAAACTGAGATTTGGAATCGTCGGCGCTGCT 679
Query 655 TTGTCCATAGGTTTTTCGTATTGGCTCAACGTAGGTTTGCTTTGGGCTTTCATGAGAGAC 714
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
Sbjct 680 TTGTCCATAGGTTTTTCGTATTGGCTCAACGTAGGTTTGCTTTGGGTTTTCATGAGAAAA 739
Query 715 TCTGCTCTCTATCGAAAAAACTGGAATCTTCGGGCACAAGAAATCTTTTTGAGCATGAAG 774
|||||||| ||||| ||||||||||||||||||| |||||||| |||||||||||||||
Sbjct 740 TCTGCTCTATATCGCGAAAACTGGAATCTTCGGGCGCAAGAAATTTTTTTGAGCATGAAG 799
Query 775 CAGTTCATTACCCTAGCAATTCCCACTGCAATGATGACTTGCCTGGAATGGTGGTCGTTT 834
|||||||||||||| ||||||||| ||||||||||||||||||| |||||||||||||||
Sbjct 800 CAGTTCATTACCCTCGCAATTCCCTCTGCAATGATGACTTGCCTAGAATGGTGGTCGTTT 859
Query 835 GAGCTTCTTATACTAATGTCAGGACTCTTACCAAACTCAAAGCTCGAAACATCGGTCCTA 894
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 860 GAGCTTCTTATACTAATGTCAGGACTCTTACCAAACTCAAAGCTCGAAACATCAGTCCTA 919
Query 895 TCCATTTGCCTAACAATGTCGTCTCTGCATTACGTTATCGTGAATGCCATAGGAGCAGCA 954
|||||||||||||||||||||||||| ||||||||| | |||||||| |||||||||||
Sbjct 920 TCCATTTGCCTAACAATGTCGTCTCTCCATTACGTTCTGGTGAATGCAATAGGAGCAGCC 979
Query 955 GCGAGCACACATGTCTCAAACAAGCTAGGAGCTGGAAATCCAAAGGCAGCTCGATCTGCG 1014
||||||||||| |||||||||||||||||||||||||||||||||||||||||| | |||
Sbjct 980 GCGAGCACACACGTCTCAAACAAGCTAGGAGCTGGAAATCCAAAGGCAGCTCGAGCCGCG 1039
Query 1015 GCTAATTCTGCGATTTTTCTTGGCATGATTGATGCAGCCATAGTAAGCATCAGTCTCTAC 1074
|||||||||||||||||||| ||| ||||||||||||| ||||||||||||| ||||||
Sbjct 1040 GCTAATTCTGCGATTTTTCTAGGCGTGATTGATGCAGCAATAGTAAGCATCACTCTCTAT 1099
Query 1075 AGCTACAGAAGAAATTGGGCTTATATATTCAGTAATGAGAGTGAAGTCGCTGACTATGTC 1134
||| ||| ||| |||||||||||||||||||| || |||||||||||||||||||||||
Sbjct 1100 AGCAACAAAAGTAATTGGGCTTATATATTCAGCAACGAGAGTGAAGTCGCTGACTATGTA 1159
Query 1135 ACTCAAATCACACCCTTTCTCTGTCTATCAATTGGTGTTGACAGCTTTCTCGCCGTACTC 1194
|||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||
Sbjct 1160 ACTCAAATCACACCCTTTCTATGCCTATCAATTGGTGTTGACAGCTTTCTCGCCGTACTC 1219
Query 1195 TCAGGAGTTGCTAGAGGAACAGGGTGGCAACATATAGGAGCTTATGCAAACATAGGATCG 1254
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1220 TCAGGAGTTGCTAGAGGAACAGGGTGGCAACATATAGGAGCTTATGCAAACATAGGATCA 1279
Query 1255 TATTATCTAGTCGGGATCCCGGTAGGTTCAATCTTGTGTTTTGTAGTGAAATTGAGAGGG 1314
|||||||| |||||||||||||||||||| ||||||||||| || |||||||||||||||
Sbjct 1280 TATTATCTGGTCGGGATCCCGGTAGGTTCGATCTTGTGTTTCGTTGTGAAATTGAGAGGG 1339
Query 1315 AAAGGACTTTGGATCGGTATATTGGTAGGTTCCACTCTACAAACGATTGTTCTTGCTCTT 1374
|||||||||||||||||||||||| | || || ||| |||||||||||||||||||||||
Sbjct 1340 AAAGGACTTTGGATCGGTATATTGATTGGCTCTACTTTACAAACGATTGTTCTTGCTCTT 1399
Query 1375 GTCACTTTCTTCACCAATTGGGAACAAGA 1403
|||||||||||||||||||||||||||||
Sbjct 1400 GTCACTTTCTTCACCAATTGGGAACAAGA 1428
> Ahg925891 jgi|Araly1|925891|scaffold_201452.1
Length=1524
Score = 1953 bits (1057), Expect = 0.0
Identities = 1262/1361 (93%), Gaps = 13/1361 (1%)
Strand=Plus/Plus
Query 97 ACAGAGATGATGAAGAAGGTAAGCTTCATGGCTGCACCAATGGTGGCTGTGGCTGCTTCT 156
|||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||
Sbjct 85 ACAGAGATGATGAAGAAGGTAAGCTTTATGGCTGCTCCAATGGTGGCTGTGGCTGCTTCT 144
Query 157 CAATACCTCCTTCAAGTTATCTCCATTGTTATGGCTGGTCACTTGGACGAGCT-T-TCTC 214
|| |||||||||||||||||||||||||||||||| ||||||||||||||||| | ||||
Sbjct 145 CAGTACCTCCTTCAAGTTATCTCCATTGTTATGGCCGGTCACTTGGACGAGCTCTCTCTC 204
Query 215 TCTCAGCCGTTGCTATTGCCACTTCTCTTACCAATGTCACCGGCTTCAGCCTCATCTTTG 274
|||| ||||||||||| || |||||||||||||| ||||||||| | ||| ||||
Sbjct 205 TCTCCGCCGTTGCTATCGCTACTTCTCTTACCAACGTCACCGGC-T-----TCA--TTTG 256
Query 275 GATTGGCAGGTGCGTTAGAGACACTGTGTGGTCAAGCTTTTGGAGCTGGGCAATTTAGGA 334
|||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||
Sbjct 257 GATTGGCAGGTGCGTTAGAGACACTGTGTGGTCAAGCTTTTGGAGCAGAGCAATTTAGGA 316
Query 335 ATATCAGTGCATACACTTACGGCTCAATGCTATGTCTTCTCTTGGTCTGTTTCCCAATCT 394
| ||| ||||||||||||| ||||||||||||||||||||||| | |||||||||||||
Sbjct 317 AAATCGGTGCATACACTTATAGCTCAATGCTATGTCTTCTCTTGTTTTGTTTCCCAATCT 376
Query 395 CACTTTTGTGGGTTTTTATGGACAAACTCTTGGAGCTTTTCCATCAAGATCCTCTTATCT 454
|||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||
Sbjct 377 CACTTTTGTGGGTTTTTATGGACAAACTATTGGAGCTTTTCCATCAAGATCCTCTCATCT 436
Query 455 CTCAATTAGCTTGTAGATACTCAATCTGGCTCATACCGGCTTTATTCGGATACTCTGTTC 514
|||| ||||| |||||||| || |||||||| ||||||||||||||||||||||||||||
Sbjct 437 CTCATTTAGCGTGTAGATATTCGATCTGGCTTATACCGGCTTTATTCGGATACTCTGTTC 496
Query 515 TTCAATCTATGACTCGATTTTTCCAGTCACAAGGATTGGTTCTACCTCTCTTCTTGAGCT 574
|||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||
Sbjct 497 TTCAATCTATGACTCGGTTTTCCCAGTCACAAGGATTGGTTCTACCTCTCTTCTTGAGCT 556
Query 575 CTCTTGGAGCTCTCTTTTTTCACGTTCCCTTTTCGTGGCTTCTTGTCTATAAACTGAGAT 634
|||| ||||||||| ||||||| |||||||||||||||||||||| |||||||||||||
Sbjct 557 CTCTCGGAGCTCTCAGTTTTCACATTCCCTTTTCGTGGCTTCTTGTTTATAAACTGAGAT 616
Query 635 TCGGAATCGTCGGCGCCGCTTTGTCCATAGGTTTTTCGTATTGGCTCAACGTAGGTTTGC 694
| |||||| ||||| | |||||||||||||||||||||||||||||||||||||||||||
Sbjct 617 TTGGAATCTTCGGCTCTGCTTTGTCCATAGGTTTTTCGTATTGGCTCAACGTAGGTTTGC 676
Query 695 TTTGGGCTTTCATGAGAGACTCTGCTCTCTATCGAAAAAACTGGAATCTTCGGGCACAAG 754
|||||| |||||||||||| | || ||| ||||| ||||| ||||||||||||| ||||
Sbjct 677 TTTGGGTTTTCATGAGAGATTTTGATCTGTATCGCGAAAACAGGAATCTTCGGGCGCAAG 736
Query 755 AAATCTTTTTGAGCATGAAGCAGTTCATTACCCTAGCAATTCCCACTGCAATGATGACTT 814
|||||||||||||||||||||||||||||||||| ||||||||| |||| ||||||||||
Sbjct 737 AAATCTTTTTGAGCATGAAGCAGTTCATTACCCTCGCAATTCCCTCTGCGATGATGACTT 796
Query 815 GCCTGGAATGGTGGTCGTTTGAGCTTCTTATACTAATGTCAGGACTCTTACCAAACTCAA 874
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 797 GCCTGGAATGGTGGTCGTTTGAGCTTCTTATACTAATGTCCGGACTCTTACCAAACTCAA 856
Query 875 AGCTCGAAACATCGGTCCTATCCATTTGCCTAACAATGTCGTCTCTGCATTACGTTATCG 934
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
Sbjct 857 AGCTCGAAACATCGGTATTATCCATTTGCCTAACAATGTCGTCTCTGCATTACGTTATTG 916
Query 935 TGAATGCCATAGGAGCAGCAGCGAGCACACATGTCTCAAACAAGCTAGGAGCTGGAAATC 994
||||||| ||||||||||| ||||||||||| ||||||||||||||||||||||||||||
Sbjct 917 TGAATGCAATAGGAGCAGCCGCGAGCACACACGTCTCAAACAAGCTAGGAGCTGGAAATC 976
Query 995 CAAAGGCAGCTCGATCTGCGGCTAATTCTGCGATTTTTCTTGGCATGATTGATGCAGCCA 1054
| |||||||||||| | | ||| |||||||||||||||| || |||||||||||||||
Sbjct 977 CGAAGGCAGCTCGAGCCGTTGCTGATTCTGCGATTTTTCTCAGCGTGATTGATGCAGCCA 1036
Query 1055 TAGTAAGCATCAGTCTCTACAG-CTACAGAAGAAATTGGGCTTATATATTCAGTAATGAG 1113
|||||||||||| |||||| | |||| ||||||||||||||||||||||||||||||||
Sbjct 1037 TAGTAAGCATCACTCTCTA-TGCCTACCGAAGAAATTGGGCTTATATATTCAGTAATGAG 1095
Query 1114 AGTGAAGTCGCTGACTATGTCACTCAAATCACACCCTTTCTCTGTCTATCAATTGGTGTT 1173
|||||||||||||||||||| |||||||||||||||||||| || |||||||||||||||
Sbjct 1096 AGTGAAGTCGCTGACTATGTAACTCAAATCACACCCTTTCTATGCCTATCAATTGGTGTT 1155
Query 1174 GACAGCTTTCTCGCCGTACTCTCAGGAGTTGCTAGAGGAACAGGGTGGCAACATATAGGA 1233
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1156 GACAGCTTTCTCGCCGTACTCTCAGGAGTTGCTAGAGGAACAGGGTGGCAACATATAGGA 1215
Query 1234 GCTTATGCAAACATAGGATCGTATTATCTAGTCGGGATCCCGGTAGGTTCAATCTTGTGT 1293
||||||||||||||||| || |||||||| ||||| |||||||||||||| |||||||||
Sbjct 1216 GCTTATGCAAACATAGGGTCATATTATCTGGTCGGTATCCCGGTAGGTTCGATCTTGTGT 1275
Query 1294 TTTGTAGTGAAATTGAGAGGGAAAGGACTTTGGATCGGTATATTGGTAGGTTCCACTCTA 1353
|| || ||||||||||||||||||||||||||||||||||||||| | || || ||| ||
Sbjct 1276 TTCGTTGTGAAATTGAGAGGGAAAGGACTTTGGATCGGTATATTGATTGGCTCTACTTTA 1335
Query 1354 CAAACGATTGTTCTTGCTCTTGTCACTTTCTTCACCAATTGGGAACAAGAGGTAGCGAAG 1413
|||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||
Sbjct 1336 CAAACGATTGTTCTTGCTCTTGTCACTTTCTTCACCAATTGGGAACAAGAGGCAGTGAAG 1395
Query 1414 GCTAGAGACAGAGTAATCGAGATGATACCACAAGA-AATCA 1453
|||||||||||||||| |||||||| | |||||| |||||
Sbjct 1396 GCTAGAGACAGAGTAACCGAGATGACATCACAAGGCAATCA 1436
> Ahg907722 jgi|Araly1|907722|Al_scaffold_0002_803
Length=1503
Score = 1234 bits (668), Expect = 0.0
Identities = 1151/1382 (83%), Gaps = 42/1382 (3%)
Strand=Plus/Plus
Query 87 TTATTTGTCAACAGAGATGATGAAGAAGGTAAGCTT-CATGGCTGCACCAATGGTGGCTG 145
|||||||||| ||||||||||||||||| || || |||||| || ||||||||||| |
Sbjct 63 TTATTTGTCAGTGGAGATGATGAAGAAGGTGAG-TTCCATGGCAGCTCCAATGGTGGCAG 121
Query 146 TGGCTGCTTCTCAATACCTCCTTCAAGTTATCTCCATTGTTATGGCTGGTCACTTGGACG 205
| | | |||||| | |||||| ||||| |||||||| ||||||||||||||||||||||
Sbjct 122 TTTCGGTTTCTCAGTTCCTCCTGCAAGTCATCTCCATGGTTATGGCTGGTCACTTGGACG 181
Query 206 AGCTTTCTCTCTCAGCCGTTGCTATTGCCACTTCTCTTACCAATGTCACCGGCTTCAGCC 265
|||| || |||||||| ||||| || |||||||| || || ||||||||||| || ||||
Sbjct 182 AGCTCTCACTCTCAGCTGTTGCAATCGCCACTTCCCTCACTAATGTCACCGGTTTTAGCC 241
Query 266 TCATCTTTGGATTGGCAGGTGCGTTAGAGACACTGTGTGGTCAAGCTTTTGGAGCTGGGC 325
||||| |||| || ||||||||||||||||| ||||||||||||||||||||||| | |
Sbjct 242 TCATCGTTGGGTTTGCAGGTGCGTTAGAGACTCTGTGTGGTCAAGCTTTTGGAGCAGAAC 301
Query 326 AATTTAGG-AATATCAGTGCATACACTTACGGCTCAATGCTATGTCTTCTCT-TGGTCTG 383
||||| || || || | |||||||| ||| |||||||||| |||||||| | | ||||
Sbjct 302 AATTT-GGAAAAATTGGGGCATACACGTACAGCTCAATGCTTTGTCTTCT-TGTCTTCTG 359
Query 384 TTTCCCAATCTCACTTTTGTGGGTTTTTATGGACAAACTCTTGGAGCTTTTCCATCAAGA 443
||| ||| |||| ||| | ||| | || |||||||||||||||||||| |||||||||||
Sbjct 360 TTTTCCAGTCTCTCTTGTATGGATCTTCATGGACAAACTCTTGGAGCTCTTCCATCAAGA 419
Query 444 TCCTCTTATCTCTCAATTAGCTTGTAGATACTCAATCTGGCTCATACCGGCTTTATTCGG 503
|||||| |||||||| |||||||| ||||||||||||||||| |||||||||||||||||
Sbjct 420 TCCTCTAATCTCTCAGTTAGCTTGCAGATACTCAATCTGGCTAATACCGGCTTTATTCGG 479
Query 504 ATACT-CTGTTCTTCAATCTATGACTCGATTTTTCCAGTCACAAGGATTGGTTCTACCTC 562
|| | || |||||||| |||||||| | | |||||||||||||||||| |||| ||||
Sbjct 480 AT-TTGCTCTTCTTCAACCTATGACTTGCTATTTCCAGTCACAAGGATTAATTCTTCCTC 538
Query 563 TCTTCTTGAGCTCTCTTGGAGCTCTCTTTTTTCACGTTCCCTTTTC-G-TGGCTTCTTGT 620
||||| ||||||||||||||||| ||| ||||||| || || |||| | |||||||||||
Sbjct 539 TCTTCGTGAGCTCTCTTGGAGCTATCTGTTTTCACATT-CC-TTTCTGTTGGCTTCTTGT 596
Query 621 CTATAAACTGAGATTCGGAATCGTCGGCGCCGCTTTGTCCATAGGTTTTTCGTATTGGCT 680
||||||||||||||| |||||||| ||||||||||||||||| || ||||| ||||||||
Sbjct 597 CTATAAACTGAGATTTGGAATCGTTGGCGCCGCTTTGTCCATCGGGTTTTCATATTGGCT 656
Query 681 CAACGTAG-GTTTGCTTTGGGCTTTCATGAG-AGACTCTGCTCT-CTATCGAAAAAACTG 737
|||||| | ||||||| || ||||||||| | |||||||| | | |||| ||| ||
Sbjct 657 CAACGT-GTTTTTGCTTCGGATTTTCATGAGTA-ACTCTGCTTTGC-ATCG-TGAAA-TG 711
Query 738 --GAATCTTCGG-GCACAAGAAATCTTTTTGAGCATGAAGCAGTTCATTACCCTAGCAAT 794
|| ||| || |||||| || | | |||||||||||||||||| |||| || ||
Sbjct 712 AAAAACCTT-GGTTTGCAAGAACTCATCTCGAGCATGAAGCAGTTCATCGCCCTCGCTAT 770
Query 795 TCCCACTGCAATGATGACT-TGCCTGGAATGGTGGTCGTTTGAGCTTCTTA-TACTAATG 852
||| |||||||||||| | |||||||||||||||||||||||| ||| || ||||||||
Sbjct 771 CCCCTCTGCAATGATGA-TATGCCTGGAATGGTGGTCGTTTGAGATTC-TACTACTAATG 828
Query 853 TCAGGACTCTTACCAAACTCAAAGCTCGAAACATCGGTCCTATCCATTTGCCTAACAATG 912
|| ||||||||||||||||||||||||||||||||||| ||||||||||||| ||||
Sbjct 829 TCTGGACTCTTACCAAACTCAAAGCTCGAAACATCGGTGATATCCATTTGCCTCACAACA 888
Query 913 TCGTCTCTGCATTACGTTATCGTGAATGCCATAGGAGCAGCAGCGAGCACACATGTCTCA 972
||| || |||||| |||| | |||||||| ||||||||| | || |||||| |||| |||
Sbjct 889 TCGGCTTTGCATTTCGTTCTGGTGAATGCGATAGGAGCATCCGCAAGCACATATGTTTCA 948
Query 973 AACAAGCTAGGAGCTGGAAATCCAAAGG-CAGCTCGATCTGCGGCTAATTCTGCGATTTT 1031
||| |||||||||||||||||| | ||| |||||||| | |||| || ||| || |||||
Sbjct 949 AACGAGCTAGGAGCTGGAAATC-ACAGGGCAGCTCGAGCGGCGGTTAGTTCGGCTATTTT 1007
Query 1032 TCTTGGCA-TGATTGATGCAGCCATAGTAAGCATCAGTCTCTACAGCTACAGAAGAAA-T 1089
|| || || |||||||| | |||| |||||||| || ||||| ||| ||| | | |
Sbjct 1008 CCTGGGTGGTG-TTGATGCAACAATAGCAAGCATCACACTTTACAGTTACCGAA-ATAGT 1065
Query 1090 TGGGCTTATATATTCAGTAATGAGAGTGAAGTCGCTGACTATGTCACTCAAATCACACCC 1149
|||| |||||||||||| || |||| ||||| ||| |||| || || ||||||||||||
Sbjct 1066 TGGGGTTATATATTCAGCAACGAGAAAGAAGTGGCTCACTACGTAACCCAAATCACACCC 1125
Query 1150 TTTCTCTGTCTATCAATTGGT-GTTGACAGCTTTCTCGCCGTACTCTCAGGAGTTGCTAG 1208
||||||| |||| ||| | ||| |||| ||||| ||||| || ||||| ||||| ||
Sbjct 1126 ATTCTCTGCCTATTTATTT-TCGTTAACAGTTTTCTTGCCGTGCTATCAGGGGTTGCCAG 1184
Query 1209 AGGAACAGGGTGGCAACATATAGGAGCTTATGCAAACATAGGATCGTATTATCTAGTCGG 1268
||||||||| ||||||| |||||||| |||||||| ||||||| |||||||| |||||
Sbjct 1185 AGGAACAGGCTGGCAACGTATAGGAGGTTATGCAAGTTTAGGATCATATTATCTTGTCGG 1244
Query 1269 GATCCCGGTAGGTTCAATCTTGTGTTTTGT-AGTGAAATTGAGAGGGAAAGGACTTTGGA 1327
|||||| |||||| |||||||||||||| | |||| |||||||| |||||||||||||
Sbjct 1245 AATCCCGTTAGGTTGGATCTTGTGTTTTGTCA-TGAAGTTGAGAGGAAAAGGACTTTGGA 1303
Query 1328 TCGGTATATTGGTAGGTTCCACTCTACAAACGAT-TGTTCTTGCTCTTGTCACTTTCTTC 1386
| |||||| | ||| |||||| | ||| | | |||| || | |||||||| ||||||
Sbjct 1304 TTGGTATACTCATAGCCTCCACTATCCAA-CTAAGTGTTTTTACCCTTGTCACCTTCTTC 1362
Query 1387 ACCAATTGGGAACAAGAGGTAGCGA-AGGCTAGAGACAGAGTAATCGAGATGATACCACA 1445
||||||||||||||||||| | ||| || | |||||||||||| ||||||||| ||||||
Sbjct 1363 ACCAATTGGGAACAAGAGGCAACGAGAGCC-AGAGACAGAGTATTCGAGATGACACCACA 1421
Query 1446 AG 1447
||
Sbjct 1422 AG 1423
> Ahg925784 jgi|Araly1|925784|scaffold_201345.1
Length=635
Score = 671 bits (363), Expect = 0.0
Identities = 411/435 (94%), Gaps = 0/435 (0%)
Strand=Plus/Plus
Query 220 GCCGTTGCTATTGCCACTTCTCTTACCAATGTCACCGGCTTCAGCCTCATCTTTGGATTG 279
||||||||||| || |||||||||||||| |||||||||||||||||| |||||||||||
Sbjct 132 GCCGTTGCTATCGCTACTTCTCTTACCAACGTCACCGGCTTCAGCCTCCTCTTTGGATTG 191
Query 280 GCAGGTGCGTTAGAGACACTGTGTGGTCAAGCTTTTGGAGCTGGGCAATTTAGGAATATC 339
||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||
Sbjct 192 GCAGGTGCGTTAGAGACACTGTGTGGTCAAGCTTTTGGAGCTGAGCAATTTAGGAAAATC 251
Query 340 AGTGCATACACTTACGGCTCAATGCTATGTCTTCTCTTGGTCTGTTTCCCAATCTCACTT 399
||||||||||||| ||||||||||||||||||||||| | ||||||||||||||||||
Sbjct 252 GGTGCATACACTTATAGCTCAATGCTATGTCTTCTCTTGTTTTGTTTCCCAATCTCACTT 311
Query 400 TTGTGGGTTTTTATGGACAAACTCTTGGAGCTTTTCCATCAAGATCCTCTTATCTCTCAA 459
||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||
Sbjct 312 TTGTGGGTTTTTATGGACAAACTATTGGAGCTTTTCCATCAAGATCCTCTCATCTCTCAT 371
Query 460 TTAGCTTGTAGATACTCAATCTGGCTCATACCGGCTTTATTCGGATACTCTGTTCTTCAA 519
|||||||||||||| || |||||||| |||||||||||||||||||||||||||||||||
Sbjct 372 TTAGCTTGTAGATATTCGATCTGGCTTATACCGGCTTTATTCGGATACTCTGTTCTTCAA 431
Query 520 TCTATGACTCGATTTTTCCAGTCACAAGGATTGGTTCTACCTCTCTTCTTGAGCTCTCTT 579
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 432 TCTATGACTCGGTTTTTCCAGTCACAAGGATTGGTTCTACCTCTCTTCTTGAGCTCTCTC 491
Query 580 GGAGCTCTCTTTTTTCACGTTCCCTTTTCGTGGCTTCTTGTCTATAAACTGAGATTCGGA 639
|||||||||| ||||||| ||||||||||||||||||||||||||||||||||||| |||
Sbjct 492 GGAGCTCTCTGTTTTCACATTCCCTTTTCGTGGCTTCTTGTCTATAAACTGAGATTTGGA 551
Query 640 ATCGTCGGCGCCGCT 654
|||||| |||| |||
Sbjct 552 ATCGTCAGCGCTGCT 566
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 54545230840
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5