BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G66790.1 Length=183 Score E Sequences producing significant alignments: (Bits) Value Ahg930296 jgi|Araly1|930296|scaffold_302753.1 139 6e-33 > Ahg930296 jgi|Araly1|930296|scaffold_302753.1 Length=253 Score = 139 bits (75), Expect = 6e-33 Identities = 129/154 (84%), Gaps = 7/154 (5%) Strand=Plus/Plus Query 34 GACGGTGGAAATGAAAACGACGAAGATGTCGGCATGTTAAGGGATGGA---GTAAGAGAG 90 |||||||| | | | |||| ||||||| | | |||||||| | |||| || | || Sbjct 57 GACGGTGGGGACGGAGACGATGAAGATG-CTG-ATGTTAAGTG-TGGATTTGTTCCACAG 113 Query 91 TTTGGTAATAGTTTTACCATTACGGGGGAGTTTGGTTATGGTTTAGCCATTAGTAGAGTT 150 ||||||||||||||||||||||||||||||||||||||| ||||| ||||||||| |||| Sbjct 114 TTTGGTAATAGTTTTACCATTACGGGGGAGTTTGGTTATAGTTTAACCATTAGTATAGTT 173 Query 151 TGT-GGAACATTCATGTTTTTAGGTCATGTTTAG 183 | | ||||| ||||||||||||||||||||||| Sbjct 174 TATTGGAACGCTCATGTTTTTAGGTCATGTTTAG 207 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 6110121760 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5