BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT1G66790.1

Length=183
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg930296 jgi|Araly1|930296|scaffold_302753.1                        139    6e-33


> Ahg930296 jgi|Araly1|930296|scaffold_302753.1
Length=253

 Score =  139 bits (75),  Expect = 6e-33
 Identities = 129/154 (84%), Gaps = 7/154 (5%)
 Strand=Plus/Plus

Query  34   GACGGTGGAAATGAAAACGACGAAGATGTCGGCATGTTAAGGGATGGA---GTAAGAGAG  90
            ||||||||  | | | |||| ||||||| | | |||||||| | ||||   ||   | ||
Sbjct  57   GACGGTGGGGACGGAGACGATGAAGATG-CTG-ATGTTAAGTG-TGGATTTGTTCCACAG  113

Query  91   TTTGGTAATAGTTTTACCATTACGGGGGAGTTTGGTTATGGTTTAGCCATTAGTAGAGTT  150
            ||||||||||||||||||||||||||||||||||||||| ||||| ||||||||| ||||
Sbjct  114  TTTGGTAATAGTTTTACCATTACGGGGGAGTTTGGTTATAGTTTAACCATTAGTATAGTT  173

Query  151  TGT-GGAACATTCATGTTTTTAGGTCATGTTTAG  183
            | | |||||  |||||||||||||||||||||||
Sbjct  174  TATTGGAACGCTCATGTTTTTAGGTCATGTTTAG  207



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 6110121760


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5