BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G66800.1 Length=1128 Score E Sequences producing significant alignments: (Bits) Value Ahg471042 jgi|Araly1|471042|fgenesh2_kg.1__996__AT1G09490.1 516 2e-145 Ahg471045 jgi|Araly1|471045|fgenesh2_kg.1__999__AT1G09500.1 464 6e-130 Ahg919704 jgi|Araly1|919704|scaffold_100985.1 396 2e-109 > Ahg471042 jgi|Araly1|471042|fgenesh2_kg.1__996__AT1G09490.1 Length=1036 Score = 516 bits (279), Expect = 2e-145 Identities = 769/998 (77%), Gaps = 63/998 (6%) Strand=Plus/Plus Query 37 GAGAAATGAACGGCGAAGGAAAGGTTGTTTGCGTCACCGGAGCTTCCGGATACATAGCTT 96 |||| |||||||||| |||||||||||| ||||| |||||||||||||| |||||||| | Sbjct 1 GAGATATGAACGGCGGAGGAAAGGTTGTCTGCGTTACCGGAGCTTCCGGTTACATAGCGT 60 Query 97 CTTGGATTGTTAAGCTTTTGCTCCTCCGTGGCTACACCGTCAGGGCCACCGTCCGAAACC 156 |||||||||| ||||||||||||||||||||||||||||||| ||||| ||| || ||| Sbjct 61 CTTGGATTGTCAAGCTTTTGCTCCTCCGTGGCTACACCGTCAATGCCACTGTCAGAGACC 120 Query 157 CAATGGATACAAAGAAAACA-AATCATCTTCTTACACTTGAAGGTGCAAGTGAAAGACTA 215 ||| ||| | ||||||||| || ||||||||| |||| || ||||||| |||||||| Sbjct 121 CAACGGACAGGAAGAAAACAGAA-CATCTTCTTGCACTAGAGGGTGCAAAAGAAAGACTC 179 Query 216 AAACTGTTCAAATCAGATCTTTTGGAAGAAGGTTCTTTCGATCAAGCTATAGAGGGATGC 275 ||| |||||||| ||||||||||||||||| |||||||| |||||||| | || || Sbjct 180 AAATTGTTCAAAGCAGATCTTTTGGAAGAATCCTCTTTCGAACAAGCTATCCAAGGCTGT 239 Query 276 GACGGTGTCTTCCATACTGCCTCTCCAGTT-TCATTAACCGTTACAGATCCTCAGACTGA 334 |||| ||||||||| || || |||||||| | ||| ||||| ||||||||||||||||| Sbjct 240 GACGCTGTCTTCCACACCGCTTCTCCAGTCCT-ATTCACCGTCACAGATCCTCAGACTGA 298 Query 335 GATGATCGATCCGGCGGTTAATGG-TACT-TTGAACGTT-TTGAGAACGTGCGC-CAAAG 390 | |||| ||||| || |||| || |||| || ||||| || | | | ||| ||| | Sbjct 299 GCTGATTGATCCAGCC-TTAAAGGGTACTATT-AACGTCCTTAATA-CATGCAAACAA-G 354 Query 391 TTTCTTCTGTGAAGAGGGTCATTGTAACATCGTCCACTGCTGC--TACTCTTTC-T-A-- 444 |||| ||||| ||||| |||||| | ||||| ||||| ||||| | |||| || | | Sbjct 355 TTTCCTCTGTCAAGAGAGTCATTCTGACATCTTCCACGGCTGCGGTTCTCTCTCGTCAGC 414 Query 445 -T--TAAC---CCAAACGACGTGGTGGACGAAACCGTCTTCACCGATCTAAGTGTTTACT 498 | || ||||||||||||||||||||||| ||||| |||||| |||| | | | Sbjct 415 CTCCTATTGGGCCAAACGACGTGGTGGACGAAACTTTCTTCTCCGATCCAAGTCTATGCA 474 Query 499 TAGCGATGAAGGCAT-GGTATGGA-TATTCAAAAACTTTGGCTGAGGAAA-CAGCGTGGC 555 | || ||| || ||||| | | | ||| | ||||||| ||| || |||| |||| Sbjct 475 GGGAGACAAAGA-ATTGGTATTCACTCTCCAAGA-CTTTGGCAGAG-AATGCAGCTTGGC 531 Query 556 GGTTTGCTAAAGAAAACGGGATCGATTTGGTTGTAATGAATCCAGGAA--ACGTGATCGG 613 ||||| ||||| || || ||||| ||||||| ||||||||||| | || ||| Sbjct 532 AATTTGCCAAAGACAATGGAATCGACATGGTTGTGTTGAATCCAGGATTTATTTG--CGG 589 Query 614 ACCAGTTTTGCAGCCAACTCTTAATTACTCTGTAGAAG-TGATTGTGGATCTGATAAATG 672 |||| | ||||| ||||||||||||| || ||||| | | ||||||||| | || |||| Sbjct 590 ACCACTCTTGCAACCAACTCTTAATTTTTCGGTAGA-GCTAATTGTGGATTTCATCAATG 648 Query 673 GTAAAAACCCTTCCAATAGTTTTTACTATAGGTTCATGGACGTGAGAGATGTTTCTCTT- 731 |||| |||| || ||||| ||||| |||||| ||||||| |||||||| | ||| Sbjct 649 GTAAGAACCTTTTCAATAAAAGATACTACAGGTTCGTGGACGTAAGAGATGTCGC-CTTA 707 Query 732 GCTCATATCAAAGCGTTCGAGG-TCCCTTCTGCTAGTGGCAGATACATACTT-GCTGATC 789 ||||||||||||||||| ||| ||| ||| || | |||||||||||| | | | || || Sbjct 708 GCTCATATCAAAGCGTTGGAGACTCC-TTCAGCCAATGGCAGATACAT-CATCGATGGTC 765 Query 790 CAGATGTAACAATG-AAA-GACATTCAAAAGCTTTTACATGAACTGTTTCCT-GATTTGT 846 || | ||| | || ||| |||||| | || || | | || || ||||| ||||||| Sbjct 766 CA-A-GTATGAGTGTAAACGACATTTTAGAGATTCTGCGGGAGCT-TTTCCCAGATTTGT 822 Query 847 GCCGT-GTTGATAAGGATAATG-AGAA--TGAGGTGGGTGAAATGGCATACAAAGTGTGT 902 | | | ||||| | | | || |||| |||| || ||||||| || |||||||||| Sbjct 823 -CTATTGCTGATACG-A-A-TGGAGAAAGTGAGATGAATGAAATGATATGCAAAGTGTGT 878 Query 903 GTCGATAAATTGAA-AAGTTTGGGAATTGAGTTCACTCCTATCAAAG-AATCTCTCA-AG 959 || || ||| |||| || ||||||| | |||||||||||||| ||| || | || | || Sbjct 879 GTGGAGAAAGTGAAGAA-TTTGGGAGTGGAGTTCACTCCTATGAAAACAAGC-CTTAGAG 936 Query 960 GATACTGTTGTTAGCCTTAAGGAGAGGTGTCTTCTTAT 997 | ||| |||||||||| ||||| | |||||| |||| Sbjct 937 -ACACTATTGTTAGCCTCAAGGATAAATGTCTT-TTAT 972 > Ahg471045 jgi|Araly1|471045|fgenesh2_kg.1__999__AT1G09500.1 Length=1120 Score = 464 bits (251), Expect = 6e-130 Identities = 752/985 (76%), Gaps = 69/985 (7%) Strand=Plus/Plus Query 53 AGGAAAGGTTGTTTGCGTCACCGGAGCTTCCGGATACATAGCTTCTTGGATTGTTAAGCT 112 |||||| || || || |||||||||||||||||||||||||| ||||||||||||||||| Sbjct 60 AGGAAAAGTGGTCTGTGTCACCGGAGCTTCCGGATACATAGCATCTTGGATTGTTAAGCT 119 Query 113 TTTGCTCCTCCGTGGCTACACCGTCAGGGCCACCGTCCGAAACCCAATGGATAC-AAAGA 171 |||||||||||||||||||||||||| || ||||| || | |||| ||| | ||||| Sbjct 120 TTTGCTCCTCCGTGGCTACACCGTCAATGCAACCGTTAGAGATCCAAACGAT-CGAAAGA 178 Query 172 AAACAAATCATCTTCTTACACTTGAAGGTGCAAGTGAAAGACTAAAACTGTTCAAATCAG 231 ||||| |||| |||||| | || || || |||| |||||||| ||| | |||||| ||| Sbjct 179 AAACAGATCACCTTCTTGCGCTGGACGGCGCAAAAGAAAGACTCAAATTATTCAAAGCAG 238 Query 232 ATCTTTTGGAAGAAGGTTCTTTCGATCAAGCTATAGAGGGATGCGACGGTGTCTTCCATA 291 ||||||| ||||||||||||||||| || || || || |||||||| ||||||||| | Sbjct 239 ATCTTTTAGAAGAAGGTTCTTTCGAACATGCAATTGATGGATGCGATACTGTCTTCCACA 298 Query 292 CTGCCTCTCCAGTT-TCATTAACCGT---TACAGATCCTCAGACTGAGATGATCGATCCG 347 |||| || || ||| | || | | || ||| ||||||||| |||| |||| ||||| Sbjct 299 CTGCTTCACCGGTTATGATCA-CTGTCAATACTGATCCTCAGGTTGAGCTGATTGATCCA 357 Query 348 GCGGTTAATGGTACT-TTGAACGTTTTGAGAACGTGCGCCAAAGTTTCTTCTGTGAAGAG 406 || || || |||||| || ||||| ||||||| ||| | || || |||||||| ||||| Sbjct 358 GCCGTCAAGGGTACTATT-AACGTCCTGAGAACTTGCACTAAGGTGTCTTCTGTCAAGAG 416 Query 407 GGTCATTGTAACATCGTCCACTG-CTGCTACT-CTTTCTATTAAC-CCAA------AC-- 455 |||||| |||||||| || | || | || | | ||| || ||| |||| || Sbjct 417 GGTCATCGTAACATCATCTA-TGGCAGC-AGTTCTTGCTCCTAAGACCAAGTTGGGACCA 474 Query 456 ---GACGTGGTGGACGAAACCGTCTTCACCGATCTAAGTGTTTACTTAGCG-ATGAAGGC 511 ||||| || ||||||||| ||||||| |||| |||| ||| || || | | ||| | Sbjct 475 AATGACGTAGTAGACGAAACCTTCTTCACTGATCCAAGT-TTTGCTGAGGGGAAAAAG-C 532 Query 512 A-TGGTATGGATA-TT-CAAAAACTTTGGCTGAGGAAACAGCGTGGCGGTTTGCTAAAGA 568 | |||||| ||| || | || |||||||| || || |||| ||||| ||||| | | Sbjct 533 AATGGTAT--ATACTTTCGAAGACTTTGGCCGAAGATGCAGCATGGCGATTTGCCACGGC 590 Query 569 AAA-CGGGATCGATTTGGTTGTAATGAATCCAGGAAACGTGATCGGACCAGTTTTGCAGC 627 || | | ||||| ||| | ||| | ||||||||| ||||| |||||| | ||||| | Sbjct 591 CAATCAG-ATCGACTTGATCGTACTAAATCCAGGACTTGTGATTGGACCAATCTTGCATC 649 Query 628 CAACTCTTAA-TTACTCTGTAGAAGTGATTGTGGATCTGAT-AAATGGTAAAAACCCTTC 685 |||||||||| || ||| |||| ||||||||||| || || ||| ||||| || |||| Sbjct 650 CAACTCTTAACTT-CTCGGTAGCTGTGATTGTGGAACTTATGAAA-GGTAAGAATCCTTT 707 Query 686 CAATAGTTTTTA-CTATAGGTTCATGGACGTGAGAGATGTTTCTCTTGCTCATATCAAAG 744 |||| | | | |||||||| ||||||||||||||||| |||| |||||| |||| | Sbjct 708 TAATACTAGACATC-ATAGGTTCGTGGACGTGAGAGATGTTGCTCTAGCTCATGTCAAGG 766 Query 745 CGTTCGAGG-TCCCTTCTGCTAGTGGCAGATACAT-ACTTGCTGATCCAGATGTAACAAT 802 | ||||| ||| ||| || | ||||||||| || | ||| || ||| | ||| ||||| Sbjct 767 CACTCGAGACTCC-TTCAGCCAATGGCAGATATATCA-TTGATGGTCCGGTTGTGACAAT 824 Query 803 GAAAGACATTCAAAA-GCTTTTACATGAACTGTTTCCTGATTTGTGCCGTGTTGATAAGG 861 ||||||||| |||| | |||| | ||| | ||||||||||||||| || ||||| || Sbjct 825 AAAAGACATTGAAAAAG-TTTTGCGCGAATTCTTTCCTGATTTGTGCATTGCTGATA-GG 882 Query 862 ATAATGA-GA-ATGAGGTGGG-TGAAAT--G-G-CATACAAAGTGTGTGTCGATAAATTG 914 | | ||| || || | || | |||| | | | | |||||||||||| | || ||| || Sbjct 883 A-A-TGAAGACATTAC-TGAGATGAATTCAGTGACTTACAAAGTGTGTCTGGAGAAAGTG 939 Query 915 AAAAGTTTGGGAAT---TGAGT-TCACTCCTATCA-AAG-AATCTCTCA-AGGATACTGT 967 |||||||||||||| ||| | ||||||||| || || || | || | || | ||||| Sbjct 940 AAAAGTTTGGGAATAACTGA-TCTCACTCCTA-CAGAAACAAGC-CTTAGAG-ACACTGT 995 Query 968 TGTTAGCCTTAAGGAGAGGTGTCTT 992 | |||| || ||||||| |||||| Sbjct 996 TCTTAGTCTCAAGGAGAAATGTCTT 1020 > Ahg919704 jgi|Araly1|919704|scaffold_100985.1 Length=895 Score = 396 bits (214), Expect = 2e-109 Identities = 343/403 (85%), Gaps = 17/403 (4%) Strand=Plus/Plus Query 38 AGAAATGAACGGCGAAGGAAAGGTTGTTTGCGTCACCGGAGCTTCCGGATACATAGCTTC 97 ||| |||||||||| ||||||||| | ||||||||||||||| |||| |||||||| || Sbjct 17 AGAGATGAACGGCGGAGGAAAGGTGGCCTGCGTCACCGGAGCTACCGGGTACATAGCGTC 76 Query 98 TTGGATTGTTAAGCTTTTGCTCCTCCGTGGCTACACCGTCAGGGCCACCGTCCGAAACCC 157 ||||||||| ||||||||||||||||||||||||||||||| |||||| || ||| |||| Sbjct 77 TTGGATTGTGAAGCTTTTGCTCCTCCGTGGCTACACCGTCAAGGCCACTGTTCGAGACCC 136 Query 158 AATGGATACAAAGAAAACAAATCATCTTCTTACACTTGAAGGTGCA-AGTGAAAGACTAA 216 || |||||||||||||||||| ||||||||| | |||||||| ||| || |||||||||| Sbjct 137 AAAGGATACAAAGAAAACAAAGCATCTTCTTGCCCTTGAAGGCGCAGAG-GAAAGACTAA 195 Query 217 AACTGTTCAAATCAGATCTTTTGGAAGAAGGTTCTTTCGATCAAGCTATAGAGGGATGCG 276 || |||||||| |||||||||||||||||||||| || | ||||||||||||||||||| Sbjct 196 AATTGTTCAAAGCAGATCTTTTGGAAGAAGGTTCGGTCCAACAAGCTATAGAGGGATGCG 255 Query 277 ACGGTGTCTTCCATA-CTGCCTCTCCAGTT-T-CATTAACCGTTACAGATCCTCAG--A- 330 | ||||||||||||| | ||||||||||| | | ||| ||| ||||||||||||| | Sbjct 256 ATGGTGTCTTCCATATC-GCCTCTCCAGTCATAC-TTA-CCGCTACAGATCCTCAGGCAT 312 Query 331 --C----TGAGATGATCGATCCGGCGGTTAATGGTACTTTGAACGTTTTGAGAACGTGCG 384 | |||| |||| ||||| || ||||| ||||| |||||||||||| ||| |||| Sbjct 313 TTCAGGCTGAGCTGATTGATCCAGCCGTTAAAGGTACAATGAACGTTTTGAAAACATGCG 372 Query 385 CCAAAGTTTCTTCTGTGAAGAGGGTCATTGTAACATCGTCCAC 427 | |||| ||| || || ||||||||| |||||||||| ||||| Sbjct 373 CGAAAGCTTCCTCGGTAAAGAGGGTCGTTGTAACATCTTCCAC 415 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 42049577451 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5