BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G66800.1
Length=1128
Score E
Sequences producing significant alignments: (Bits) Value
Ahg471042 jgi|Araly1|471042|fgenesh2_kg.1__996__AT1G09490.1 516 2e-145
Ahg471045 jgi|Araly1|471045|fgenesh2_kg.1__999__AT1G09500.1 464 6e-130
Ahg919704 jgi|Araly1|919704|scaffold_100985.1 396 2e-109
> Ahg471042 jgi|Araly1|471042|fgenesh2_kg.1__996__AT1G09490.1
Length=1036
Score = 516 bits (279), Expect = 2e-145
Identities = 769/998 (77%), Gaps = 63/998 (6%)
Strand=Plus/Plus
Query 37 GAGAAATGAACGGCGAAGGAAAGGTTGTTTGCGTCACCGGAGCTTCCGGATACATAGCTT 96
|||| |||||||||| |||||||||||| ||||| |||||||||||||| |||||||| |
Sbjct 1 GAGATATGAACGGCGGAGGAAAGGTTGTCTGCGTTACCGGAGCTTCCGGTTACATAGCGT 60
Query 97 CTTGGATTGTTAAGCTTTTGCTCCTCCGTGGCTACACCGTCAGGGCCACCGTCCGAAACC 156
|||||||||| ||||||||||||||||||||||||||||||| ||||| ||| || |||
Sbjct 61 CTTGGATTGTCAAGCTTTTGCTCCTCCGTGGCTACACCGTCAATGCCACTGTCAGAGACC 120
Query 157 CAATGGATACAAAGAAAACA-AATCATCTTCTTACACTTGAAGGTGCAAGTGAAAGACTA 215
||| ||| | ||||||||| || ||||||||| |||| || ||||||| ||||||||
Sbjct 121 CAACGGACAGGAAGAAAACAGAA-CATCTTCTTGCACTAGAGGGTGCAAAAGAAAGACTC 179
Query 216 AAACTGTTCAAATCAGATCTTTTGGAAGAAGGTTCTTTCGATCAAGCTATAGAGGGATGC 275
||| |||||||| ||||||||||||||||| |||||||| |||||||| | || ||
Sbjct 180 AAATTGTTCAAAGCAGATCTTTTGGAAGAATCCTCTTTCGAACAAGCTATCCAAGGCTGT 239
Query 276 GACGGTGTCTTCCATACTGCCTCTCCAGTT-TCATTAACCGTTACAGATCCTCAGACTGA 334
|||| ||||||||| || || |||||||| | ||| ||||| |||||||||||||||||
Sbjct 240 GACGCTGTCTTCCACACCGCTTCTCCAGTCCT-ATTCACCGTCACAGATCCTCAGACTGA 298
Query 335 GATGATCGATCCGGCGGTTAATGG-TACT-TTGAACGTT-TTGAGAACGTGCGC-CAAAG 390
| |||| ||||| || |||| || |||| || ||||| || | | | ||| ||| |
Sbjct 299 GCTGATTGATCCAGCC-TTAAAGGGTACTATT-AACGTCCTTAATA-CATGCAAACAA-G 354
Query 391 TTTCTTCTGTGAAGAGGGTCATTGTAACATCGTCCACTGCTGC--TACTCTTTC-T-A-- 444
|||| ||||| ||||| |||||| | ||||| ||||| ||||| | |||| || | |
Sbjct 355 TTTCCTCTGTCAAGAGAGTCATTCTGACATCTTCCACGGCTGCGGTTCTCTCTCGTCAGC 414
Query 445 -T--TAAC---CCAAACGACGTGGTGGACGAAACCGTCTTCACCGATCTAAGTGTTTACT 498
| || ||||||||||||||||||||||| ||||| |||||| |||| | | |
Sbjct 415 CTCCTATTGGGCCAAACGACGTGGTGGACGAAACTTTCTTCTCCGATCCAAGTCTATGCA 474
Query 499 TAGCGATGAAGGCAT-GGTATGGA-TATTCAAAAACTTTGGCTGAGGAAA-CAGCGTGGC 555
| || ||| || ||||| | | | ||| | ||||||| ||| || |||| ||||
Sbjct 475 GGGAGACAAAGA-ATTGGTATTCACTCTCCAAGA-CTTTGGCAGAG-AATGCAGCTTGGC 531
Query 556 GGTTTGCTAAAGAAAACGGGATCGATTTGGTTGTAATGAATCCAGGAA--ACGTGATCGG 613
||||| ||||| || || ||||| ||||||| ||||||||||| | || |||
Sbjct 532 AATTTGCCAAAGACAATGGAATCGACATGGTTGTGTTGAATCCAGGATTTATTTG--CGG 589
Query 614 ACCAGTTTTGCAGCCAACTCTTAATTACTCTGTAGAAG-TGATTGTGGATCTGATAAATG 672
|||| | ||||| ||||||||||||| || ||||| | | ||||||||| | || ||||
Sbjct 590 ACCACTCTTGCAACCAACTCTTAATTTTTCGGTAGA-GCTAATTGTGGATTTCATCAATG 648
Query 673 GTAAAAACCCTTCCAATAGTTTTTACTATAGGTTCATGGACGTGAGAGATGTTTCTCTT- 731
|||| |||| || ||||| ||||| |||||| ||||||| |||||||| | |||
Sbjct 649 GTAAGAACCTTTTCAATAAAAGATACTACAGGTTCGTGGACGTAAGAGATGTCGC-CTTA 707
Query 732 GCTCATATCAAAGCGTTCGAGG-TCCCTTCTGCTAGTGGCAGATACATACTT-GCTGATC 789
||||||||||||||||| ||| ||| ||| || | |||||||||||| | | | || ||
Sbjct 708 GCTCATATCAAAGCGTTGGAGACTCC-TTCAGCCAATGGCAGATACAT-CATCGATGGTC 765
Query 790 CAGATGTAACAATG-AAA-GACATTCAAAAGCTTTTACATGAACTGTTTCCT-GATTTGT 846
|| | ||| | || ||| |||||| | || || | | || || ||||| |||||||
Sbjct 766 CA-A-GTATGAGTGTAAACGACATTTTAGAGATTCTGCGGGAGCT-TTTCCCAGATTTGT 822
Query 847 GCCGT-GTTGATAAGGATAATG-AGAA--TGAGGTGGGTGAAATGGCATACAAAGTGTGT 902
| | | ||||| | | | || |||| |||| || ||||||| || ||||||||||
Sbjct 823 -CTATTGCTGATACG-A-A-TGGAGAAAGTGAGATGAATGAAATGATATGCAAAGTGTGT 878
Query 903 GTCGATAAATTGAA-AAGTTTGGGAATTGAGTTCACTCCTATCAAAG-AATCTCTCA-AG 959
|| || ||| |||| || ||||||| | |||||||||||||| ||| || | || | ||
Sbjct 879 GTGGAGAAAGTGAAGAA-TTTGGGAGTGGAGTTCACTCCTATGAAAACAAGC-CTTAGAG 936
Query 960 GATACTGTTGTTAGCCTTAAGGAGAGGTGTCTTCTTAT 997
| ||| |||||||||| ||||| | |||||| ||||
Sbjct 937 -ACACTATTGTTAGCCTCAAGGATAAATGTCTT-TTAT 972
> Ahg471045 jgi|Araly1|471045|fgenesh2_kg.1__999__AT1G09500.1
Length=1120
Score = 464 bits (251), Expect = 6e-130
Identities = 752/985 (76%), Gaps = 69/985 (7%)
Strand=Plus/Plus
Query 53 AGGAAAGGTTGTTTGCGTCACCGGAGCTTCCGGATACATAGCTTCTTGGATTGTTAAGCT 112
|||||| || || || |||||||||||||||||||||||||| |||||||||||||||||
Sbjct 60 AGGAAAAGTGGTCTGTGTCACCGGAGCTTCCGGATACATAGCATCTTGGATTGTTAAGCT 119
Query 113 TTTGCTCCTCCGTGGCTACACCGTCAGGGCCACCGTCCGAAACCCAATGGATAC-AAAGA 171
|||||||||||||||||||||||||| || ||||| || | |||| ||| | |||||
Sbjct 120 TTTGCTCCTCCGTGGCTACACCGTCAATGCAACCGTTAGAGATCCAAACGAT-CGAAAGA 178
Query 172 AAACAAATCATCTTCTTACACTTGAAGGTGCAAGTGAAAGACTAAAACTGTTCAAATCAG 231
||||| |||| |||||| | || || || |||| |||||||| ||| | |||||| |||
Sbjct 179 AAACAGATCACCTTCTTGCGCTGGACGGCGCAAAAGAAAGACTCAAATTATTCAAAGCAG 238
Query 232 ATCTTTTGGAAGAAGGTTCTTTCGATCAAGCTATAGAGGGATGCGACGGTGTCTTCCATA 291
||||||| ||||||||||||||||| || || || || |||||||| ||||||||| |
Sbjct 239 ATCTTTTAGAAGAAGGTTCTTTCGAACATGCAATTGATGGATGCGATACTGTCTTCCACA 298
Query 292 CTGCCTCTCCAGTT-TCATTAACCGT---TACAGATCCTCAGACTGAGATGATCGATCCG 347
|||| || || ||| | || | | || ||| ||||||||| |||| |||| |||||
Sbjct 299 CTGCTTCACCGGTTATGATCA-CTGTCAATACTGATCCTCAGGTTGAGCTGATTGATCCA 357
Query 348 GCGGTTAATGGTACT-TTGAACGTTTTGAGAACGTGCGCCAAAGTTTCTTCTGTGAAGAG 406
|| || || |||||| || ||||| ||||||| ||| | || || |||||||| |||||
Sbjct 358 GCCGTCAAGGGTACTATT-AACGTCCTGAGAACTTGCACTAAGGTGTCTTCTGTCAAGAG 416
Query 407 GGTCATTGTAACATCGTCCACTG-CTGCTACT-CTTTCTATTAAC-CCAA------AC-- 455
|||||| |||||||| || | || | || | | ||| || ||| |||| ||
Sbjct 417 GGTCATCGTAACATCATCTA-TGGCAGC-AGTTCTTGCTCCTAAGACCAAGTTGGGACCA 474
Query 456 ---GACGTGGTGGACGAAACCGTCTTCACCGATCTAAGTGTTTACTTAGCG-ATGAAGGC 511
||||| || ||||||||| ||||||| |||| |||| ||| || || | | ||| |
Sbjct 475 AATGACGTAGTAGACGAAACCTTCTTCACTGATCCAAGT-TTTGCTGAGGGGAAAAAG-C 532
Query 512 A-TGGTATGGATA-TT-CAAAAACTTTGGCTGAGGAAACAGCGTGGCGGTTTGCTAAAGA 568
| |||||| ||| || | || |||||||| || || |||| ||||| ||||| | |
Sbjct 533 AATGGTAT--ATACTTTCGAAGACTTTGGCCGAAGATGCAGCATGGCGATTTGCCACGGC 590
Query 569 AAA-CGGGATCGATTTGGTTGTAATGAATCCAGGAAACGTGATCGGACCAGTTTTGCAGC 627
|| | | ||||| ||| | ||| | ||||||||| ||||| |||||| | ||||| |
Sbjct 591 CAATCAG-ATCGACTTGATCGTACTAAATCCAGGACTTGTGATTGGACCAATCTTGCATC 649
Query 628 CAACTCTTAA-TTACTCTGTAGAAGTGATTGTGGATCTGAT-AAATGGTAAAAACCCTTC 685
|||||||||| || ||| |||| ||||||||||| || || ||| ||||| || ||||
Sbjct 650 CAACTCTTAACTT-CTCGGTAGCTGTGATTGTGGAACTTATGAAA-GGTAAGAATCCTTT 707
Query 686 CAATAGTTTTTA-CTATAGGTTCATGGACGTGAGAGATGTTTCTCTTGCTCATATCAAAG 744
|||| | | | |||||||| ||||||||||||||||| |||| |||||| |||| |
Sbjct 708 TAATACTAGACATC-ATAGGTTCGTGGACGTGAGAGATGTTGCTCTAGCTCATGTCAAGG 766
Query 745 CGTTCGAGG-TCCCTTCTGCTAGTGGCAGATACAT-ACTTGCTGATCCAGATGTAACAAT 802
| ||||| ||| ||| || | ||||||||| || | ||| || ||| | ||| |||||
Sbjct 767 CACTCGAGACTCC-TTCAGCCAATGGCAGATATATCA-TTGATGGTCCGGTTGTGACAAT 824
Query 803 GAAAGACATTCAAAA-GCTTTTACATGAACTGTTTCCTGATTTGTGCCGTGTTGATAAGG 861
||||||||| |||| | |||| | ||| | ||||||||||||||| || ||||| ||
Sbjct 825 AAAAGACATTGAAAAAG-TTTTGCGCGAATTCTTTCCTGATTTGTGCATTGCTGATA-GG 882
Query 862 ATAATGA-GA-ATGAGGTGGG-TGAAAT--G-G-CATACAAAGTGTGTGTCGATAAATTG 914
| | ||| || || | || | |||| | | | | |||||||||||| | || ||| ||
Sbjct 883 A-A-TGAAGACATTAC-TGAGATGAATTCAGTGACTTACAAAGTGTGTCTGGAGAAAGTG 939
Query 915 AAAAGTTTGGGAAT---TGAGT-TCACTCCTATCA-AAG-AATCTCTCA-AGGATACTGT 967
|||||||||||||| ||| | ||||||||| || || || | || | || | |||||
Sbjct 940 AAAAGTTTGGGAATAACTGA-TCTCACTCCTA-CAGAAACAAGC-CTTAGAG-ACACTGT 995
Query 968 TGTTAGCCTTAAGGAGAGGTGTCTT 992
| |||| || ||||||| ||||||
Sbjct 996 TCTTAGTCTCAAGGAGAAATGTCTT 1020
> Ahg919704 jgi|Araly1|919704|scaffold_100985.1
Length=895
Score = 396 bits (214), Expect = 2e-109
Identities = 343/403 (85%), Gaps = 17/403 (4%)
Strand=Plus/Plus
Query 38 AGAAATGAACGGCGAAGGAAAGGTTGTTTGCGTCACCGGAGCTTCCGGATACATAGCTTC 97
||| |||||||||| ||||||||| | ||||||||||||||| |||| |||||||| ||
Sbjct 17 AGAGATGAACGGCGGAGGAAAGGTGGCCTGCGTCACCGGAGCTACCGGGTACATAGCGTC 76
Query 98 TTGGATTGTTAAGCTTTTGCTCCTCCGTGGCTACACCGTCAGGGCCACCGTCCGAAACCC 157
||||||||| ||||||||||||||||||||||||||||||| |||||| || ||| ||||
Sbjct 77 TTGGATTGTGAAGCTTTTGCTCCTCCGTGGCTACACCGTCAAGGCCACTGTTCGAGACCC 136
Query 158 AATGGATACAAAGAAAACAAATCATCTTCTTACACTTGAAGGTGCA-AGTGAAAGACTAA 216
|| |||||||||||||||||| ||||||||| | |||||||| ||| || ||||||||||
Sbjct 137 AAAGGATACAAAGAAAACAAAGCATCTTCTTGCCCTTGAAGGCGCAGAG-GAAAGACTAA 195
Query 217 AACTGTTCAAATCAGATCTTTTGGAAGAAGGTTCTTTCGATCAAGCTATAGAGGGATGCG 276
|| |||||||| |||||||||||||||||||||| || | |||||||||||||||||||
Sbjct 196 AATTGTTCAAAGCAGATCTTTTGGAAGAAGGTTCGGTCCAACAAGCTATAGAGGGATGCG 255
Query 277 ACGGTGTCTTCCATA-CTGCCTCTCCAGTT-T-CATTAACCGTTACAGATCCTCAG--A- 330
| ||||||||||||| | ||||||||||| | | ||| ||| ||||||||||||| |
Sbjct 256 ATGGTGTCTTCCATATC-GCCTCTCCAGTCATAC-TTA-CCGCTACAGATCCTCAGGCAT 312
Query 331 --C----TGAGATGATCGATCCGGCGGTTAATGGTACTTTGAACGTTTTGAGAACGTGCG 384
| |||| |||| ||||| || ||||| ||||| |||||||||||| ||| ||||
Sbjct 313 TTCAGGCTGAGCTGATTGATCCAGCCGTTAAAGGTACAATGAACGTTTTGAAAACATGCG 372
Query 385 CCAAAGTTTCTTCTGTGAAGAGGGTCATTGTAACATCGTCCAC 427
| |||| ||| || || ||||||||| |||||||||| |||||
Sbjct 373 CGAAAGCTTCCTCGGTAAAGAGGGTCGTTGTAACATCTTCCAC 415
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 42049577451
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5