BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G66810.1
Length=1006
Score E
Sequences producing significant alignments: (Bits) Value
Ahg475777 jgi|Araly1|475777|fgenesh2_kg.2__907__AT1G66810.1 1088 0.0
> Ahg475777 jgi|Araly1|475777|fgenesh2_kg.2__907__AT1G66810.1
Length=984
Score = 1088 bits (589), Expect = 0.0
Identities = 867/990 (88%), Gaps = 63/990 (6%)
Strand=Plus/Plus
Query 74 ATGGAGAAACTCGCGGCGTCTACTGTTACAGATCTAGCTTGCGTAACGGCGATAAACTCA 133
|||||||||||||| ||||||| | |||||||||||||||||||| || |||||||||
Sbjct 1 ATGGAGAAACTCGCTTCGTCTACAATAACAGATCTAGCTTGCGTAACAGCAATAAACTCA 60
Query 134 TCGCCGCCTCCACTATCACCGATCTCTGAACAAAGCTTCAACAACAAACACCAAGAAGAG 193
| || |||||| ||||||| |||||||| ||||||||||||||||||| |||||||||
Sbjct 61 CCACCACCTCCATTATCACCTCTCTCTGAAAAAAGCTTCAACAACAAACATCAAGAAGAG 120
Query 194 TTCGCCGCAAGCTTCGCATCActctacaactcaa---tct--------tctc-a---ccg 238
||||||||||||||||||||||||||||| |||| ||| |||| | |||
Sbjct 121 TTCGCCGCAAGCTTCGCATCACTCTACAATTCAATTTTCTCACCGGAATCTCAATTCCCG 180
Query 239 -----g-aatctctctctccttctcctccgtcctcttcctcaccaccatctcGCGTCGAT 292
| |||||||||||||||||||||||||||||||||||| ||| ||||| |||||
Sbjct 181 ATTTCGTTATCTCTCTCTCCTTCTCCTCCGTCCTCTTCCTCACCGCCAGCTCGCTTCGAT 240
Query 293 ACAACTACAGAGCATCGTCTTCTTCAAGCGAAACTTATCCTCGAGTACGACGAACTCAAC 352
||||| |||||||||||||||| |||||||| |||||||||||||||||| |||||||||
Sbjct 241 ACAACAACAGAGCATCGTCTTCGTCAAGCGAGACTTATCCTCGAGTACGATGAACTCAAC 300
Query 353 GAGCATTACGAGCTTTGCCTTAACCGTCTTCAATCTCTAATGACGGAACTTGACTCTCTT 412
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 301 GAGCATTACGAGCTTTGCCTTAACCGTCTTCAATCTCTAATGACGGAACTCGACTCTCTT 360
Query 413 CGTCACGAAAACGATTCTCTCCGCTTTGAAAACTCAGATCTACTCAAACTTATTCGTATC 472
||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||
Sbjct 361 CGTCACGAAAACGATTCTCTCCGCTTTGAAAACTCAGATCTACTCAAACTTATTCATCTC 420
Query 473 TCTACTTCA---------TCCTCCTCCTCCGTCTCTCCTCCGGCG--CCGAT--CCATAA 519
||||||||| |||||||||||||||||||| ||| || || || ||||||
Sbjct 421 TCTACTTCATCTTCTTCCTCCTCCTCCTCCGTCTCTCCACCGCCGATCC-ATAACCATAA 479
Query 520 CCGTCAATTCCGTCACCAGATCTCCGATTCTCGCTCCG---C-GAAG-AGAAACAAT-CA 573
||| ||||||||||||||||||||||||| ||| |||| | ||| | | | |
Sbjct 480 CCGCCAATTCCGTCACCAGATCTCCGATT-TCGGTCCGATTCATAAGCATTCTCGCTCCG 538
Query 574 AG-AGAGAAACTCGTTGCCTAAGAGCATCTCCGTCAGATCTCAAGGATATCTCAAGATCA 632
| ||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||
Sbjct 539 TGAAGAGAAACTCGTTGCCTAAGAGCATCTCCGTCAGATCTCCAGGTTATCTCAAGATCA 598
Query 633 ACCATGGATTTGAAGCGTCAGATC-TCCAAACGAGTCAACTCAGC-T--C---T-AACTC 684
|||||||||||| || || |||| | |||||||||||||||||| | | | ||| |
Sbjct 599 ACCATGGATTTGGAGTTTCTGATCGT-CAAACGAGTCAACTCAGCTTCACGAGTCAACAC 657
Query 685 -GGT--G--TC--T-TCTTCTCAAAAGGTGTGTGTAGTACAAACAAAAGGGGAGAGAGAA 736
| | | || | || |||||||||||||||||||||| ||||||||| |||||||||
Sbjct 658 AGCTCCGACTCGGTGTCGTCTCAAAAGGTGTGTGTAGTACCAACAAAAGGAGAGAGAGAA 717
Query 737 GCATTAGAGCTTGAGGTATATCGTCAAGGGATGATGAAGACGGAGCTTTGTAACAAATGG 796
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 718 GCATTAGAGCTTGAGGTATATCGTCAAGGGATGATGAAGACGGAGCTTTGTAACAAATGG 777
Query 797 CAAGAGACTGGAGCTTGTTGTTACGGCGATAATTGCCAATTCGCTCACGGAATCGACGAG 856
|||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||
Sbjct 778 CAAGAGACTGGAGCTTGTCCTTACGGCGATAATTGCCAATTCGCTCACGGAATCGGCGAG 837
Query 857 CTACGTCCTGTGATTAGGCATCCACGCTACAAAACTGAGGTTTGCAGAATGATGGTCACC 916
|| ||||||||||||||||||||||| ||||||||||||||||| |||||||| ||||||
Sbjct 838 CTCCGTCCTGTGATTAGGCATCCACGGTACAAAACTGAGGTTTGTAGAATGATTGTCACC 897
Query 917 GGAGCTATGTGTCCGTACGGTCACCGTTGCCATTTCCGTCACTCACTTACTGATCAAGAG 976
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 898 GGAGCTATGTGTCCTTACGGTCACCGTTGCCATTTCCGTCACTCACTTACTGATCAAGAG 957
Query 977 AGGATGATGATGATGATGCTTACTCGCTGA 1006
||||||||||||||| | | |||||||||
Sbjct 958 AGGATGATGATGATGCT-C--ACTCGCTGA 984
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 37398581577
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5