BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT1G66820.1

Length=512
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg925897 jgi|Araly1|925897|scaffold_201458.1                        514    2e-145


> Ahg925897 jgi|Araly1|925897|scaffold_201458.1
Length=372

 Score =  514 bits (278),  Expect = 2e-145
 Identities = 339/368 (92%), Gaps = 6/368 (2%)
 Strand=Plus/Plus

Query  40   CAA-TCACAAAACCAATGGGATCAACTAATAAACTCTGGAGCCGTAAACCAGACGTCAAA  98
            ||| |||||||||| |||| ||||| ||| ||||| ||||||||||||||||| ||||||
Sbjct  8    CAATTCACAAAACC-ATGGCATCAAATAACAAACTTTGGAGCCGTAAACCAGATGTCAAA  66

Query  99   ACCGGGAAATCAGAATTTCCGGTTACCAGATTCCTCCGTACACAAATCGATAACATCAAG  158
            ||||||||||| |||||||||||||||||||| ||||| |||||||||||||||||||||
Sbjct  67   ACCGGGAAATCCGAATTTCCGGTTACCAGATTTCTCCGGACACAAATCGATAACATCAAG  126

Query  159  -ACAACAACCGTCGGTCCCGGAATCGGCGGCGGCATTGGCTGCGGCGCTGGAATCGGCAT  217
             || ||||||| |||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct  127  AAC-ACAACCGCCGGTCCTGGAATCGGCGGCGGCATTGGCTGCGGCGCTGGAATCGGCAT  185

Query  218  TGGTCTCTCCGGCGGGCTCGGAATAGGTGCCTCTGAAGGACTTGA-CCATTCTAACGTGG  276
            ||||||| ||||||||||||| |||| ||||||||||||  |||| ||||||||| ||||
Sbjct  186  TGGTCTCACCGGCGGGCTCGGGATAGCTGCCTCTGAAGGT-TTGAACCATTCTAATGTGG  244

Query  277  TTCTTGGATTCGGTATTGGTTGTGGTATCGGGTTCGGGTTTGGATACGGATTTGGAGTTG  336
            ||||||| |||||||| ||||| |||||||||||||||||||||||||| ||||||||||
Sbjct  245  TTCTTGGGTTCGGTATGGGTTGCGGTATCGGGTTCGGGTTTGGATACGGGTTTGGAGTTG  304

Query  337  GCGGCGGGTACAGTTTCGATGACATCAAAGAGAGATTTGACCTATGaaaaaaaGCTCCGG  396
            |||||||||||||||||||||| || ||||| ||||||||||||||| ||||||||||||
Sbjct  305  GCGGCGGGTACAGTTTCGATGATATTAAAGATAGATTTGACCTATGAGAAAAAGCTCCGG  364

Query  397  TTCATAAT  404
            ||||||||
Sbjct  365  TTCATAAT  372



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 18619927432


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5