BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G66830.1
Length=2177
Score E
Sequences producing significant alignments: (Bits) Value
Ahg475779 jgi|Araly1|475779|fgenesh2_kg.2__909__AT1G66830.1 3097 0.0
> Ahg475779 jgi|Araly1|475779|fgenesh2_kg.2__909__AT1G66830.1
Length=2124
Score = 3097 bits (1677), Expect = 0.0
Identities = 1990/2141 (93%), Gaps = 22/2141 (1%)
Strand=Plus/Plus
Query 24 TTTCTTGGAGATATTTAGGAGCCAAACTTTACTCAATTCAGAATTGTGTCTCTCTTTAGA 83
||| |||||||| ||||| |||||||||||||||||||||||||||||| ||||||||||
Sbjct 1 TTTTTTGGAGATCTTTAGAAGCCAAACTTTACTCAATTCAGAATTGTGTTTCTCTTTAGA 60
Query 84 GATGTCTCAGTTATTTCTCATTCTCTGCTTCATTCTAACTCATTTCTTTGCCATAGCCAC 143
|||| |||| |||||||||||||||| ||| |||||||||||||| |||||||| || ||
Sbjct 61 GATGGCTCAATTATTTCTCATTCTCTCCTTAATTCTAACTCATTTTTTTGCCATGGCTAC 120
Query 144 TTCTCTAAACGATCAAGGTCTTGCTCTTCTTTCCTTTAAACAATCCATACAAAACC--AG 201
|||| |||||||||||||||||||||||||||||||||| |||||| ||||||||| ||
Sbjct 121 TTCTTTAAACGATCAAGGTCTTGCTCTTCTTTCCTTTAAGCAATCCTTACAAAACCAGAG 180
Query 202 -AGTGACTCTGTTTTTACCAATTGGAACTCTTCAGATTCAAACCCTTGTTCT-TGGCAAG 259
||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||
Sbjct 181 TAGTGACTCTGTTTTTACCAATTGGAACTCTTCAGATTCAAACCCTTGTT-TATGGCAAG 239
Query 260 GTGTTACATGTAATTATGATATGAGAGTTGTCTCGATTCGTCTTCCTAATAAACGTCTTT 319
|||||||||||||| |||| |||||||||| ||||||||||||||||||| ||| ||||
Sbjct 240 GTGTTACATGTAATGATGAGCTGAGAGTTGTTTCGATTCGTCTTCCTAATACACGGCTTT 299
Query 320 CGGGTTCTCTTGATCCATCCATTGGAAGTCTCTTGTCCCTTCGTCACATTAACCTAAGAG 379
|||||| |||| ||||||||||||||||||||||||| |||||||| ||||||| ||||
Sbjct 300 CGGGTTTTCTTCATCCATCCATTGGAAGTCTCTTGTCGCTTCGTCATGTTAACCTTAGAG 359
Query 380 ACAATGACTTTCAAGGGAAGTTACCTGTGGAACTCTTTGGACTTAAAGGGCTTCAAAGCT 439
||||||| ||||||||| |||||||||||||||| | |||||||||||||||||||||||
Sbjct 360 ACAATGAGTTTCAAGGGGAGTTACCTGTGGAACTATATGGACTTAAAGGGCTTCAAAGCT 419
Query 440 TGGTGCTTTCTGGAAATTCTTTTTCCGGGTTTGTCCCAGAAGAGATTGGTAGCTTGAAGA 499
||| ||| || || ||||||||||||||||| || || || |||||||| || |||||||
Sbjct 420 TGGGGCTGTCCGGGAATTCTTTTTCCGGGTTGGTTCCTGAGGAGATTGGGAGGTTGAAGA 479
Query 500 GTCTAATGACTCTGGATCTTTCGGAGAATTCTTTCAACGGTTCGATTTCTTTGTCGCTTA 559
|||| |||||| |||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 480 GTCTGATGACTTTGGATCTTTCGGAGAATTCTTTCAACGGTTCGATCCCTTTGTCGCTTA 539
Query 560 TTCCATGCAAGAAGCTGAAAACGCTTGTTCTTAGCAAGAACAGTTTCTCTGGAGATCTTC 619
||| |||||||||||||||||| ||||||||||||||||||||||||||||||| |||||
Sbjct 540 TTCAATGCAAGAAGCTGAAAACACTTGTTCTTAGCAAGAACAGTTTCTCTGGAGCTCTTC 599
Query 620 CAACAGGGTTAGGTTCTAACTTGGTTCATCTTCGGACACTGAATCTTTCTTTCAATCGCT 679
|||| ||||| |||||||||||||||||||||||||| |||||||||||||||||||| |
Sbjct 600 CAACCGGGTTTGGTTCTAACTTGGTTCATCTTCGGACGCTGAATCTTTCTTTCAATCGAT 659
Query 680 TGACTGGAACGATCCCCGAAGATGTAGGAAGTCTGGAGAATCTGAAAGGTACACTTGATC 739
| ||||||||||||||||||||| | |||| |||| |||||||||||||||| |||||||
Sbjct 660 TAACTGGAACGATCCCCGAAGATATCGGAAATCTGAAGAATCTGAAAGGTACTCTTGATC 719
Query 740 TTTCTCATAACTTCTTCTCAGGTATGATTCCAACAAGTCTTGGAAATCTCCCTGAGCTTC 799
||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||| |
Sbjct 720 TTTCTCATAACGTCTTCTCAGGTATGATTCCAACAAGTCTTGGAAATCTCCCGGAGCTAC 779
Query 800 TCTATGTCGATCTTTCTTACAATAATCTCAGTGGTCCGATACCAAAATTCAACGTTCTGT 859
| |||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||
Sbjct 780 TGTATGTCGATCTTTCTTACAATAATCTCAGTGGTCCGATACCAAAATCCAACGTTTTGT 839
Query 860 TGAATGCCGGTCCAAATGCTTTCCAAGGGAACCCTTTCCTCTGTGGATTACCGAT-AAAG 918
|||||||||||||||||||||||||||||||||||||||| || ||||||||||| ||||
Sbjct 840 TGAATGCCGGTCCAAATGCTTTCCAAGGGAACCCTTTCCTTTGCGGATTACCGATAAAAG 899
Query 919 ATTTCTTGCAGCACAAGAAACACACAAGTAGTTCCTTCTCAACTATATACAAGAAGAGCC 978
||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 900 -TTTCTTGCACCACAAGAAACACACAGGTAGTTCCTTCTCAACTATATACAAGAAGAGCC 958
Query 979 AACCATCATTCTAGACTCTGCATCATCCTTACAGCCACTGGAGGCACAGTCGCCGGAATC 1038
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 959 AACCATCATTCTAGACTCTGCATCATCCTTACAGCCACTGGAGGCACAGTGGCCGGAATC 1018
Query 1039 ATTTTTCTTGCTTCATTATTCATCTACTATCTCCGAAAAGCATCGGCTCGTGCAAACAAA 1098
||||||||||||| ||||||||||||||||| || |||||||| |||||||||| ||||
Sbjct 1019 ATTTTTCTTGCTTTGTTATTCATCTACTATCTTCGGAAAGCATCAGCTCGTGCAATCAAA 1078
Query 1099 GATCAAAACAACCGAACATGTCATATAAACGAGAAACTGAAGAAGACGACAAAGCCAGAG 1158
||| | ||||||| ||| | | || |||| |||||| || | ||||||||||| |
Sbjct 1079 GATGAGAACAACC--ACA---C--A-GAA-GAGATACTGAA-AA-A-GACAAAGCCAGGG 1126
Query 1159 TTTCTCTGTTTCAAGACTGGGAATTCAGAATCTGAAACGCTAGATGAGAACAAAAATCAA 1218
||| | |||||||||||||||||||||||||||||| |||| | |||||||||||||||
Sbjct 1127 TTTTTATGTTTCAAGACTGGGAATTCAGAATCTGAAGCGCT--A-GAGAACAAAAATCAA 1183
Query 1219 CAAGTTTTCATGCCAATGGACCCGGAAATCGAATTTGACCTCGACCAGCTTCTAAAAGCC 1278
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1184 CAAGTTTTCATGCCAATGGACCCGGAAATCGAATTTGACCTAGACCAGCTTCTAAAAGCC 1243
Query 1279 TCGGCTTTTCTTCTAGGGAAGAGCAGGATCGGGCTTGTGTACAAGGTAGTTCTTGAAAAT 1338
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1244 TCGGCTTTTCTTCTAGGGAAGAGCAGGATCGGGCTTGTGTACAAGGTTGTTCTTGAAAAC 1303
Query 1339 GGATTAATGTTAGCCGTTAGACGATTAGAAGATAAAGGTTGGCTACGGCTCAAAGAGTTT 1398
|| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1304 GGGTTAATGTTAGCCGTTAGACGATTAGAAGATAAAGGTTGGCTAAGGCTCAAAGAGTTT 1363
Query 1399 CTAGCTGATGTCGAAGCAATGGCGAAAATCAAGCACCCTAATGTCTTGAATCTCAAGGCT 1458
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1364 CTAGCTGATGTCGAAGCAATGGCGAAAATCAAGCACCCGAATGTCTTGAATCTCAAGGCT 1423
Query 1459 TGTTGCTGGTCTCCTGAAGAGAAACTCCTGATTTATGATTACATACCAAATGGTGACCTT 1518
|||||||||||||| |||||||||||||| || |||||||||||||||||||||||||||
Sbjct 1424 TGTTGCTGGTCTCCGGAAGAGAAACTCCTAATCTATGATTACATACCAAATGGTGACCTT 1483
Query 1519 GGTTCTGCAATTCAAGGTAGACCTGGTAGCGTGTCATGCAAGCAACTAACCTGGACGGTC 1578
|||||||||||||||||||||||||||||||| || |||||||||||||| ||| |||||
Sbjct 1484 GGTTCTGCAATTCAAGGTAGACCTGGTAGCGTCTCCTGCAAGCAACTAACTTGGCCGGTC 1543
Query 1579 CGGTTAAAAATATTGAGAGGAATAGCAAAAGGATTAACTTATATTCATGAGTTTAGTCCC 1638
||||||| ||||||||||||||| ||||||||||| ||||| ||||| ||||| ||||||
Sbjct 1544 CGGTTAAGAATATTGAGAGGAATCGCAAAAGGATTGACTTACATTCACGAGTTCAGTCCC 1603
Query 1639 AAAAGGTATGTCCATGGACATATAAACACAAGCAACATACTTCTAGGACCGAATCTTGAA 1698
||||| || |||||||||||||||||| |||||||||||||||| |||||||||||||||
Sbjct 1604 AAAAGATACGTCCATGGACATATAAACTCAAGCAACATACTTCTCGGACCGAATCTTGAA 1663
Query 1699 CCGAAAGTATCCGGTTTCGGTCTAGGTCGTATCGTCGACACGTCTTCAGATATCAGATCA 1758
||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||
Sbjct 1664 CCGAAAGTATCCGGTTTCGGTCTAGGTCGTATCGTCGACACATCTTCAGAGATCAGATCA 1723
Query 1759 GACCAAATCTCTCCCATGGAGACAAGCTCACCAATCCTCTCTAGAGAATCATATTACCAA 1818
||||| ||||| |||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1724 GACCAGATCTCCCCCATGGAGACAAGCTCACCAATCATCTCTAGAGAATCATATTACCAA 1783
Query 1819 GCTCCTGAAGCAGCTTCAAAAATGACTAAACCGTCTCAGAAATGGGATGTGTATTCATTC 1878
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1784 GCTCCTGAAGCAGCTTCAAAGATGACTAAACCGTCTCAGAAATGGGATGTGTATTCATTC 1843
Query 1879 GGTTTAGTGATACTCGAAATGGTAACCGGAAAATCTCCGGTTAGTTCAGAAATGGATTTG 1938
|||||||||||||||||| |||||||||||||||||||||||| |||||| |||||||||
Sbjct 1844 GGTTTAGTGATACTCGAATTGGTAACCGGAAAATCTCCGGTTAATTCAGAGATGGATTTG 1903
Query 1939 GTTATGTGGGTTGAATCGGCTAGTGAGAGAAATAAACCGGCTTGGTATGTTCTTGATCCG 1998
|||||||||||| |||| |||||||||||||||||||||| |||||||||||||||||||
Sbjct 1904 GTTATGTGGGTTCAATCTGCTAGTGAGAGAAATAAACCGGTTTGGTATGTTCTTGATCCG 1963
Query 1999 GTTTTAGCTCGTGATAGAGATTTGGAAGATAGTATGGTTCAAGTCATCAAGATCGGTTTA 2058
||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1964 GTTTTAGCTCGAGATAGAGATTTGGAAGATAGTATGGTTCAAGTTATCAAGATCGGTTTA 2023
Query 2059 GCTTGTGTGCAGAAGAACCCAGATAAAAGACCACACATGAGAAGTGTATTGGAGAGCTTC 2118
||||||||||||||||| |||||||||||||||| |||||||| ||| | |||||||||
Sbjct 2024 GCTTGTGTGCAGAAGAATCCAGATAAAAGACCACTCATGAGAAATGTCTACGAGAGCTTC 2083
Query 2119 GAGAAATTGGTAACTTCTATTTAATTATTATTAATTAATGA 2159
||||||||||| |||| ||||||||||| |||||||||||
Sbjct 2084 GAGAAATTGGTTTCTTCCATTTAATTATTTTTAATTAATGA 2124
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 81932116995
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5