BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G66840.1
Length=2094
Score E
Sequences producing significant alignments: (Bits) Value
Ahg908217 jgi|Araly1|908217|Al_scaffold_0002_1298 2582 0.0
> Ahg908217 jgi|Araly1|908217|Al_scaffold_0002_1298
Length=1854
Score = 2582 bits (1398), Expect = 0.0
Identities = 1712/1859 (92%), Gaps = 40/1859 (2%)
Strand=Plus/Plus
Query 129 ATGGGTGAAAGGAATTTAGATGGAACTGTATCAGTGAAAGCCACCATTAATAAGTACGGA 188
||||||||||||| ||||| ||||| |||||||||||||||| |||||||||||||||||
Sbjct 1 ATGGGTGAAAGGACTTTAGGTGGAATTGTATCAGTGAAAGCCGCCATTAATAAGTACGGA 60
Query 189 CAAAAAGCTACAAGAAG---C------------G-T---C-A-T--TAA-GTCTTC---G 221
||||||||||||||||| | | | | | | ||| |||||| |
Sbjct 61 CAAAAAGCTACAAGAAGTGTCTCTCATCATCTTGATTTACCAGTCATAAAGTCTTCTTCG 120
Query 222 GTTGCTG-AGGATTTGCATAAGTCAGGTAGAGAACTTGGTATCTACAGAGAGAGTAGAAG 280
|||| || ||||||||||||||||||| || |||||||| |||||||| |||||||||||
Sbjct 121 GTTG-TGGAGGATTTGCATAAGTCAGGGAGGGAACTTGGAATCTACAGGGAGAGTAGAAG 179
Query 281 AGTTGCTGAGTCTGCTAAGGCCAAAGCAGAAGTGGAATTGTGTAAGGCGAAGAAGATAGT 340
||| ||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 180 AGTAGCTGAGTCTGCAAAGGCGAAAGCAGAAGTGGAATTGTGTAAGGCGAAGAAGATAGT 239
Query 341 AAAGGAGCTTACTTTACGGATAGAGGAGTCGAATAGAAGGTTAAAGTCTCGGAGAATCGA 400
|||||||||||||||||||||||||||||||||| |||||||||||||||| | ||||||
Sbjct 240 AAAGGAGCTTACTTTACGGATAGAGGAGTCGAATCGAAGGTTAAAGTCTCGAAAAATCGA 299
Query 401 TATTGAAGCTGTGATGAATGAGTCAAGGATAGATGGGAATGGTGGTTATGTTAGGATTAT 460
||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||
Sbjct 300 TATTGAAGCTGTGATGAATGAGTCAAGGATAGATGGGAATGGTGGGTATGCTAGGATTAT 359
Query 461 GAGAGAGTTAGAAGATATGAAGCAAGAATTGAGTAAGCTGAAGCTTGATGTAGTGTATGT 520
||||||||| || ||| |||||||||||||||||||||||||||||||| ||||||||||
Sbjct 360 GAGAGAGTTGGAGGATTTGAAGCAAGAATTGAGTAAGCTGAAGCTTGATATAGTGTATGT 419
Query 521 TTCGAGAGAGAAAGTTGTGGCGGAGAAAGAAGTAATGGAGTTGGAGTCTAGAATGGAGGA 580
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 420 TTCGAGAGAGAAAGTTGTGGCGGAGAAAGAAGTAATGGAGTTGGGGTCTAGAATGGAGGA 479
Query 581 GAATTTGAAGTTGCTT-GAGAGTCTCAAGTTAGAAGTTGATGTTGCGAATGAAGAACATG 639
||||||||||||| || |||||||| |||||||| |||||||||||||| ||||||||||
Sbjct 480 GAATTTGAAGTTG-TTAGAGAGTCTTAAGTTAGAGGTTGATGTTGCGAACGAAGAACATG 538
Query 640 TATTGGTTGAAGTGGCGAAGATCGAGGCTTTGAAGGAGTGTAAAGAGGTTGAAGAGCAGA 699
| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 539 TTTTGGTTGAATTGGCGAAGATCGAGGCTTTGAAGGAGTGTAAAGAGGTTGAAGAGCAGA 598
Query 700 GGGAGAAGGAAAGGAAGGAAGTGTCTGAGTCATTGCATAAACGAAAGAAAAGAATAAGGG 759
| |||| ||||||||||||||||| |||||||||||||||||||||||||||||||| ||
Sbjct 599 GAGAGAGGGAAAGGAAGGAAGTGTTTGAGTCATTGCATAAACGAAAGAAAAGAATAAAGG 658
Query 760 AAATGATTAGAGAGATTGAGAGATCGAAGAACTTTGAGAATGAGTTAGCTGAGACTTTGT 819
|||||| ||||||||||||||||| ||||||||||||||||||||| ||||||| || |
Sbjct 659 AAATGAAGAGAGAGATTGAGAGATCAAAGAACTTTGAGAATGAGTTATCTGAGACATTAT 718
Query 820 TAGATATTGAGATGTTAGAAACTCAGTTAAAGCTTGTCAAGGAAATGGAGAGGAAGGTTC 879
| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 719 TGGATATTGAGATGTTGGAAACTCAGTTAAAGCTTGTCAAGGAAATGGAGAGGAAGGTTC 778
Query 880 AGAGGAATGAGAGTATGTCGAGATCGAAAAACCGAGCTTTCGAAAGAGGGAAGGATAATT 939
|||| ||||| ||||||||||||||||||||||||||||| |||||||| || ||||||
Sbjct 779 AGAGAAATGATAGTATGTCGAGATCGAAAAACCGAGCTTTTGAAAGAGGAAAAGATAATC 838
Query 940 TGTCGGTTTTGAAAGAAGTTACCGAAGCAACAGAAGCGAAGAAGGCAGAACTCGCTTCTA 999
||||||| ||||||||||||| ||||||||||||||||||||||| ||||| |||||||
Sbjct 839 TGTCGGTATTGAAAGAAGTTATGGAAGCAACAGAAGCGAAGAAGGCGGAACTTGCTTCTA 898
Query 1000 TTAACGCGGAGTTATTTTGTCTAGTCAATACAATGGATACATTGAGGAAAGAATTTGACC 1059
||||||| || | |||||||||||||||||||||||||| |||||||||||| ||||||
Sbjct 899 TTAACGCAGAACTCTTTTGTCTAGTCAATACAATGGATACCTTGAGGAAAGAACTTGACC 958
Query 1060 ATGC-AAAGAAAGAAACAGCTTGGTTAGATAAGATGATACAAAAGGATGATGTAATGCTT 1118
| || ||| || ||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 959 AAGCTAAACAA-GAAACAGCTTGGTTAGATAAGATGATACAAAAGGATGATGTAATGATT 1017
Query 1119 GAGAGACTCAATACGAAGCTGCTTATTGCGAAAGATCAATTAGAAGCAGTATCTAAAGCT 1178
|||||||||||||||||||||||||||| |||||||||||||| |||||||||| ||||
Sbjct 1018 GAGAGACTCAATACGAAGCTGCTTATTGTGAAAGATCAATTAGCAGCAGTATCTGCAGCT 1077
Query 1179 GAAGAAAGAATCAGCTATCTTGCTGACAATTTAACTACTTCGTTTGAGAAACTAAAGAGT 1238
|||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||
Sbjct 1078 GAAGAAAGAATCAGCTGTCTTGCGGACAATTTAACTACTTCGTTTGAGAAACTAAAGAAC 1137
Query 1239 GATAGAGAAGCTGCAAAGAAAGAGGAGCTTAAGCTTAGAGAAGAAGCAAGGATCATCAAC 1298
|||||||||||||| ||||||||||||||||| |||| ||||||||||||||||||| |
Sbjct 1138 GATAGAGAAGCTGCGAAGAAAGAGGAGCTTAACCTTAAAGAAGAAGCAAGGATCATCGAT 1197
Query 1299 AATGAGATACAGAAAACCGAAACAGGATTTGATGGAAAGGAAAAAGAGTTGCTTTCCAAG 1358
|| || |||||||| | ||||| ||| ||||||||||||||||||||||| |||||||||
Sbjct 1198 AAAGAAATACAGAATATCGAAATAGGTTTTGATGGAAAGGAAAAAGAGTTACTTTCCAAG 1257
Query 1359 TTAGATGAGCTTGAGAAAGCGAAGCACGCAGAGAG-TTTAGCTCT-AGAGAAGCTTGAAA 1416
|||||||||||| |||||||||||||| ||||| | ||||||||| | |||||||||||
Sbjct 1258 TTAGATGAGCTTAAGAAAGCGAAGCACACAGAG-GCTTTAGCTCTCA-AGAAGCTTGAAT 1315
Query 1417 CAATGGTAGAGAAAACAATGGAAACTCGAGAAATGGAATCTCGGCGTAATTCAACTATTA 1476
|||||||||||||||||||||||||||| |||||||||||||||| ||||||||| || |
Sbjct 1316 CAATGGTAGAGAAAACAATGGAAACTCGGGAAATGGAATCTCGGCATAATTCAACCATCA 1375
Query 1477 CAATATCGAGATTTGAGTACGAGTATTTGAGTGGAAAAGCTTGTCATGCTGAAGAAACTG 1536
||||||| ||||| |||||||||||||||||||||||||||||||| ||||||||||| |
Sbjct 1376 CAATATCAAGATTCGAGTACGAGTATTTGAGTGGAAAAGCTTGTCACGCTGAAGAAACCG 1435
Query 1537 CAGAGAAGAAAGTGGAAGCAGCAATGGCGTGGGTCGAAGCACTAAAGGCTAGCACTAAGG 1596
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1436 CAGAGAAGAAAGTGGAAGCTGCAATGGCGTGGGTCGAAGCACTAAAGGCTAGCACTAAGG 1495
Query 1597 CGATTATGATAAAGACAGAATCTTTAAAGAGAGTGAGTGGGAAAACAATGTTGGAAGAAG 1656
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1496 CGATTATGATAAAGACAGAATCTTTAAAGAGGGTGAGTGGGAAAACAATGTTGGAAGAAG 1555
Query 1657 AGAGGGAATCGTTTAGGATGCAGAGGTCGCTATCGATAAAGAGATTGGTCCAAGATGAGA 1716
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1556 AGAGGGAATCGTTTAGGATGCAGAGGTCGCTATCGATAAAGAGATTGATCCAAGATGAGA 1615
Query 1717 TTCAGAAGTTCAAGGGAAATTCAGAAGACAATGGCTTGATCAACTCTCCTAAACCGGTGA 1776
|| |||||||||||| ||| ||||||||||| | ||||| ||| ||||||||||||||||
Sbjct 1616 TTGAGAAGTTCAAGGAAAACTCAGAAGACAAAGACTTGAACAATTCTCCTAAACCGGTGA 1675
Query 1777 GAAAATCGGTTAGGCTGAGCGGGAAATTTGCACCGGTTCAGGGAGGGAAGTCGAGAAGGT 1836
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
Sbjct 1676 GAAAATCGGTTAGGCTGAGCGGGAAATTCACACCGGTTCAGGGAGGGAAGTCGAGAAGAT 1735
Query 1837 ACTCATC---AGGGAACCGAGCGACTCCAACATTCTTTGTAATCAAGAAGAAGAAGAAAG 1893
||||||| ||||||| |||| |||||||| ||||||||||||||||||||||||||||
Sbjct 1736 ACTCATCTGCAGGGAACAGAGCAACTCCAACTTTCTTTGTAATCAAGAAGAAGAAGAAAG 1795
Query 1894 TTCCAAACATGGTCAAATTTTTTAGCCGGAAGAGGCGTAATTCTTCTTTAGAACAATGA 1952
||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||
Sbjct 1796 TTCCAAACATGGTCAAATTTTTTAGCCGGAAAAGGCGTAATTCCTCTTTAGAACAATGA 1854
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 78770626660
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5