BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT1G66850.1

Length=477
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg475781 jgi|Araly1|475781|fgenesh2_kg.2__911__AT1G66850.1          667    0.0  


> Ahg475781 jgi|Araly1|475781|fgenesh2_kg.2__911__AT1G66850.1
Length=474

 Score =  667 bits (361),  Expect = 0.0
 Identities = 439/475 (92%), Gaps = 11/475 (2%)
 Strand=Plus/Plus

Query  1    AATATAGAATATAACCATATTCCGGACATGAAGATCGTGACATTGGTACTCGTCGTCTTC  60
            |||||| || | ||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct  1    AATATAAAAAACAACCAAATTCCGGACATGAAGATCGTGACATTGGTACTCGTCGTCTTC  60

Query  61   GTCATACTTTCGACATCATTCCCGGCTGCCA---TCAAAGCCGAAGACACGGGAGATACA  117
            ||||||||||||| |||||||||||||||||   ||||||||| ||||||||||||||||
Sbjct  61   GTCATACTTTCGATATCATTCCCGGCTGCCATCGTCAAAGCCGCAGACACGGGAGATACA  120

Query  118  GGAAATGTGGGAGTGACATGTGACGCAAGGCAGCTTCAGCCTTGCCTTGCCGCGATTACG  177
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  121  GGAAATGTGGGAGTGACATGTGACGCAAGGCAGCTTCAGCCTTGCCTTGCCGCGATTACG  180

Query  178  GGAGGAGGACAACCCTCAGGTGCATGTTGTGCAAAGCTTACAGAGCAACAGTCATGCCTC  237
            ||||||||||| || || |||||||||||||| |||||||||||||||||||||||||| 
Sbjct  181  GGAGGAGGACAGCCTTCGGGTGCATGTTGTGCTAAGCTTACAGAGCAACAGTCATGCCTT  240

Query  238  TGTGGTTTCGCTAAGAACCCTGCGTTCGCACAGTACATTAGCTCTCCAAACGCTCGCAAA  297
            |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct  241  TGTGGTTTCGCTAAGAACCCTGCGTTTGCACAGTACATTAGCTCTCCAAACGCTCGCAAA  300

Query  298  GTGCTCCTTGCTTGCAATGTTGCTTATCCCACTTGTTGAAACT-TA---T-CTAGAGATT  352
            || ||| || ||||   |||||||||||| ||||||||||| | ||   | |||||||||
Sbjct  301  GTCCTCGTTACTTGTGGTGTTGCTTATCCTACTTGTTGAAA-TATACACTACTAGAGATT  359

Query  353  TTATAAATAAATAAACGAAAGGAAATAAATTACATTATATCAAACGTT--ATGATACAAT  410
            ||||||||||||||  |||| |||||||||||||||||||||||||||  |||| ||| |
Sbjct  360  TTATAAATAAATAATTGAAATGAAATAAATTACATTATATCAAACGTTTTATGAAACAGT  419

Query  411  TCAACCGTTTGTGTTAATGTACTGGCTTACATGGTTAAATAAAGTTTATTTTCTT  465
            | |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  420  TTAACCGTTTGTGTTAATGTACTGGCTTACATGGTTAAATAAAGTTTATTTTCTT  474



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 17284481817


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5