BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G66852.1
Length=333
Score E
Sequences producing significant alignments: (Bits) Value
Ahg925906 jgi|Araly1|925906|scaffold_201467.1 424 3e-118
Ahg925901 jgi|Araly1|925901|scaffold_201462.1 412 6e-115
Ahg908221 jgi|Araly1|908221|Al_scaffold_0002_1302 412 6e-115
Ahg925894 jgi|Araly1|925894|scaffold_201455.1 213 6e-55
Ahg925902 jgi|Araly1|925902|scaffold_201463.1 163 7e-40
> Ahg925906 jgi|Araly1|925906|scaffold_201467.1
Length=376
Score = 424 bits (229), Expect = 3e-118
Identities = 303/338 (90%), Gaps = 7/338 (2%)
Strand=Plus/Plus
Query 1 ATGTTTCCGCAATTGTCACTAATTTTTCTTTTCTCTCTCGTTGTAATCCACCCTTTTCAT 60
||||||||||||||| ||||||| |||||||||||||| |||||||||||||| |||||
Sbjct 21 ATGTTTCCGCAATTGACACTAATCTTTCTTTTCTCTCTTGTTGTAATCCACCCCCTTCAT 80
Query 61 GTCTCGGCCAAGACATGGTGTGTGGCAAATACATCGGCGGCAAGTACACTACTACAAGCT 120
||||| ||||||||||||||||||||||||||||| || ||| ||||| ||||||||||
Sbjct 81 GTCTCAGCCAAGACATGGTGTGTGGCAAATACATCTGCAGCACCTACACAACTACAAGCT 140
Query 121 AATATTGATTGGGCATGTAGTGAAGGAAAAGTTGATTGTGTAATGATCAATCCTGGTGGA 180
|||||||||| |||||||| |||||||||||||||||||||| |||||||| ||||||
Sbjct 141 AATATTGATTATGCATGTAGCGAAGGAAAAGTTGATTGTGTAAAAATCAATCCCGGTGGA 200
Query 181 CCTTGCTTTGATCCAGATACTGTTATTAG-TCATGCATCGTTTGTGATGAATGATTTCTA 239
|||||||||||||||||||||| |||| | ||||||| ||||||||||||||||||||
Sbjct 201 GTTTGCTTTGATCCAGATACTGTTCTTAGCT-ATGCATCATTTGTGATGAATGATTTCTA 259
Query 240 T-AGAAATCACGGGAGCACTGAAGAG---TGTAATTTTAGTGGTACCGGTCAAGTCGTTA 295
|||| ||| ||||||||||||||| ||||||||||||||||| |||||| ||||||
Sbjct 260 CCAGAA-TCATGGGAGCACTGAAGAGGCGTGTAATTTTAGTGGTACTGGTCAAATCGTTA 318
Query 296 CTTTTGATCCAAGTTATGGTGGTTGTGTGTATACGTAG 333
|| ||||||||||||||||| ||||||||||||| |||
Sbjct 319 CTGTTGATCCAAGTTATGGTAGTTGTGTGTATACATAG 356
> Ahg925901 jgi|Araly1|925901|scaffold_201462.1
Length=376
Score = 412 bits (223), Expect = 6e-115
Identities = 300/337 (89%), Gaps = 5/337 (1%)
Strand=Plus/Plus
Query 1 ATGTTTCCGCAATTGTCACTAATTTTTCTTTTCTCTCTCGTTGTAATCCACCCTTTTCAT 60
||||||||||| ||| ||||||| |||||||||||||| |||||||||||||| |||||
Sbjct 21 ATGTTTCCGCAGTTGACACTAATCTTTCTTTTCTCTCTTGTTGTAATCCACCCCCTTCAT 80
Query 61 GTCTCGGCCAAGACATGGTGTGTGGCAAATACATCGGCGGCAAGTACACTACTACAAGCT 120
||||| ||||||||||||||||||||||||||||| || ||| ||||| ||||||||||
Sbjct 81 GTCTCAGCCAAGACATGGTGTGTGGCAAATACATCCGCAGCACCTACACAACTACAAGCT 140
Query 121 AATATTGATTGGGCATGTAGTGAAGGAAAAGTTGATTGTGTAATGATCAATCCTGGTGGA 180
|||||||||| |||||||| |||||||||||||| |||| || |||||||| ||||||
Sbjct 141 AATATTGATTATGCATGTAGCGAAGGAAAAGTTGACTGTGCAAAAATCAATCCCGGTGGA 200
Query 181 CCTTGCTTTGATCCAGATACTGTTATTAGTCATGCATCGTTTGTGATGAATGATTTCTAT 240
|||||||||||||||||||||| |||| |||||||| ||||||||||||||||||||
Sbjct 201 GTTTGCTTTGATCCAGATACTGTTCTTAGCCATGCATCATTTGTGATGAATGATTTCTAC 260
Query 241 -AGAAATCACGGGAGCACTGAAGAG---TGTAATTTTAGTGGTACCGGTCAAGTCGTTAC 296
|||| ||| ||||||||||||||| ||||||||||||||||| ||||||||||||||
Sbjct 261 CAGAA-TCATGGGAGCACTGAAGAGGCGTGTAATTTTAGTGGTACTGGTCAAGTCGTTAC 319
Query 297 TTTTGATCCAAGTTATGGTGGTTGTGTGTATACGTAG 333
| |||||||||||||||| ||||||||||||| |||
Sbjct 320 TGCTGATCCAAGTTATGGTAGTTGTGTGTATACATAG 356
> Ahg908221 jgi|Araly1|908221|Al_scaffold_0002_1302
Length=336
Score = 412 bits (223), Expect = 6e-115
Identities = 303/340 (89%), Gaps = 11/340 (3%)
Strand=Plus/Plus
Query 1 ATGTTTCCGCAATTGTCACTAATTTTTCTTTTCTCTCTCGTTGTAATCCACCCTTTTCAT 60
|||||| ||||||| ||||||| || ||| | |||||||||||||||||||| |||||
Sbjct 1 ATGTTTTCGCAATTAACACTAATATTCCTTCTGTCTCTCGTTGTAATCCACCCCCTTCAT 60
Query 61 GTCTCGGCCAAGACATGGTGTGTGGCAAATACATCGGCGGCAAG-TACACTACTACAAGC 119
||||||||||||||||||||||||||||| ||||||||||| | ||||| |||||||||
Sbjct 61 GTCTCGGCCAAGACATGGTGTGTGGCAAACCCATCGGCGGCA-GCTACACAACTACAAGC 119
Query 120 TAATATTGATTGGGCATGTAGTGAAGGAAA-AGTTGATTGTGTAATGATCAATCCTGGTG 178
||||||||||||||||||||||| |||||| | ||||||||||||| |||||||||||||
Sbjct 120 TAATATTGATTGGGCATGTAGTGTAGGAAACA-TTGATTGTGTAATCATCAATCCTGGTG 178
Query 179 GACCTTGCTTTGATCCAGATACTGTTATTAGTCATGCATC-GTTTGTGATGAATGATTTC 237
||||||||||||||||| |||||||||||| |||||||| ||| ||||||||||||| |
Sbjct 179 GACCTTGCTTTGATCCAAATACTGTTATTAACCATGCATCAGTT-GTGATGAATGATTAC 237
Query 238 TAT-AGAAATCACGGGAGCACTGAAGAG---TGTAATTTTAGTGGTACCGGTCAAGTCGT 293
|| ||| ||||||||||||||||||| |||| |||||||||||| |||||| ||||
Sbjct 238 TACCAGAC-TCACGGGAGCACTGAAGAGGCGTGTAGTTTTAGTGGTACTGGTCAAATCGT 296
Query 294 TACTTTTGATCCAAGTTATGGTGGTTGTGTGTATACGTAG 333
|| | |||||||||||||||||||||||| ||||||||||
Sbjct 297 TAGTGTTGATCCAAGTTATGGTGGTTGTGCGTATACGTAG 336
> Ahg925894 jgi|Araly1|925894|scaffold_201455.1
Length=385
Score = 213 bits (115), Expect = 6e-55
Identities = 274/348 (79%), Gaps = 21/348 (6%)
Strand=Plus/Plus
Query 1 ATGTTTCCGCAATTGTCACTAATTTTTCTTTTCTCTCTCGTTGTAATCCACCCT-TTTCA 59
||||||||||||||| |||||| | ||| | |||||||||||||| || ||| ||||
Sbjct 24 ATGTTTCCGCAATTGAAACTAATCGTCCTTCTATCTCTCGTTGTAATTCA-CCTCCTTCA 82
Query 60 TGTCTCGGCCAAGACATGGTGTGTGGCAAATACATCGGCGGCAAG-T--AC-ACT---AC 112
||||| |||||| | |||||||||| || |||| || || || | || ||| ||
Sbjct 83 TGTCTTGGCCAAAAAATGGTGTGTGTCAGCGGCATCTGC-GCCAGATACACAACTACAAC 141
Query 113 TACAAGCTAATATTGATTGGGCATGTAGTGA-AGGAAAAGTTGATTGTGTAATGATCAAT 171
|||||||||||||||||||||||||||| | |||||||||||| | ||||| ||||||
Sbjct 142 TACAAGCTAATATTGATTGGGCATGTAGC-ATAGGAAAAGTTGACTATGTAAAAATCAAT 200
Query 172 CCT-GGTGGACCTTGCTTTGATCCAGATACTGTTATTAGTCATGCATCGTTTGTGATGAA 230
| | |||||| ||||| ||| ||| ||||| || |||||||||||| |||||||||||
Sbjct 201 C-TAGGTGGAGATTGCTATGAACCAAATACTCCTACTAGTCATGCATCATTTGTGATGAA 259
Query 231 TGATTTCTAT-AGAAATCACGGGAGCACTGAAGAG---TGTAATTTTAGTGGTACCGGTC 286
||||| ||| |||| ||||| | |||||||||| ||| |||| | | ||| ||||
Sbjct 260 TGATTACTACCAGAAC-CACGGAAACACTGAAGAGACATGTGATTTCAATCATACTGGTC 318
Query 287 AAGTCGTTACTTTTGATCCAAGTTATGGTGGTTGT-GTGTATACGTAG 333
|| | || | ||||||||||||| || ||||| | ||||||||||
Sbjct 319 AAATAATTGGTGCTGATCCAAGTTATCGTCGTTGTAG-GTATACGTAG 365
> Ahg925902 jgi|Araly1|925902|scaffold_201463.1
Length=295
Score = 163 bits (88), Expect = 7e-40
Identities = 186/233 (80%), Gaps = 8/233 (3%)
Strand=Plus/Plus
Query 105 TACACTACTACAAGCTAATATTGATTGGGCATGTAGTGAAGGAAAAGTTGATTGTGTAAT 164
||||| ||||||||||||||||||||||||||||| ||||| |||| || |||| ||
Sbjct 38 TACACAACTACAAGCTAATATTGATTGGGCATGTAACGAAGGCCAAGTCGACTGTGCAAA 97
Query 165 GATCAATCCTGGTGGACCT-TGCTTTGATCCAGATACTGTTATTAGTCATGCATCGTTTG 223
|||||||||||||| | | |||| ||| ||| ||||| || ||| |||||||| ||||
Sbjct 98 AATCAATCCTGGTGG-CGTATGCTATGAACCAAATACTCCTACTAGCCATGCATCATTTG 156
Query 224 TGATGAATGATTTCTATAGAAATCACGGGAGCACTGAAGAG---TGTAATTTTAGTGGTA 280
||||||| |||| |||| | | |||||| |||||||||||| ||| |||| | | ||
Sbjct 157 TGATGAACGATTACTATCGGAGTCACGGAAGCACTGAAGAGGCATGTGATTTCAATCATA 216
Query 281 CCGGTCAAGTCGTTACTTTTGATCCAAGTTATGGTGGTTGT-GTGTAT-ACGT 331
| |||||| | ||| | ||||||||||||| || ||||| | |||| ||||
Sbjct 217 CTGGTCAAATTATTAGTGGTGATCCAAGTTATCGTCGTTGTAG-GTATGACGT 268
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 11790077001
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5