BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G66852.1 Length=333 Score E Sequences producing significant alignments: (Bits) Value Ahg925906 jgi|Araly1|925906|scaffold_201467.1 424 3e-118 Ahg925901 jgi|Araly1|925901|scaffold_201462.1 412 6e-115 Ahg908221 jgi|Araly1|908221|Al_scaffold_0002_1302 412 6e-115 Ahg925894 jgi|Araly1|925894|scaffold_201455.1 213 6e-55 Ahg925902 jgi|Araly1|925902|scaffold_201463.1 163 7e-40 > Ahg925906 jgi|Araly1|925906|scaffold_201467.1 Length=376 Score = 424 bits (229), Expect = 3e-118 Identities = 303/338 (90%), Gaps = 7/338 (2%) Strand=Plus/Plus Query 1 ATGTTTCCGCAATTGTCACTAATTTTTCTTTTCTCTCTCGTTGTAATCCACCCTTTTCAT 60 ||||||||||||||| ||||||| |||||||||||||| |||||||||||||| ||||| Sbjct 21 ATGTTTCCGCAATTGACACTAATCTTTCTTTTCTCTCTTGTTGTAATCCACCCCCTTCAT 80 Query 61 GTCTCGGCCAAGACATGGTGTGTGGCAAATACATCGGCGGCAAGTACACTACTACAAGCT 120 ||||| ||||||||||||||||||||||||||||| || ||| ||||| |||||||||| Sbjct 81 GTCTCAGCCAAGACATGGTGTGTGGCAAATACATCTGCAGCACCTACACAACTACAAGCT 140 Query 121 AATATTGATTGGGCATGTAGTGAAGGAAAAGTTGATTGTGTAATGATCAATCCTGGTGGA 180 |||||||||| |||||||| |||||||||||||||||||||| |||||||| |||||| Sbjct 141 AATATTGATTATGCATGTAGCGAAGGAAAAGTTGATTGTGTAAAAATCAATCCCGGTGGA 200 Query 181 CCTTGCTTTGATCCAGATACTGTTATTAG-TCATGCATCGTTTGTGATGAATGATTTCTA 239 |||||||||||||||||||||| |||| | ||||||| |||||||||||||||||||| Sbjct 201 GTTTGCTTTGATCCAGATACTGTTCTTAGCT-ATGCATCATTTGTGATGAATGATTTCTA 259 Query 240 T-AGAAATCACGGGAGCACTGAAGAG---TGTAATTTTAGTGGTACCGGTCAAGTCGTTA 295 |||| ||| ||||||||||||||| ||||||||||||||||| |||||| |||||| Sbjct 260 CCAGAA-TCATGGGAGCACTGAAGAGGCGTGTAATTTTAGTGGTACTGGTCAAATCGTTA 318 Query 296 CTTTTGATCCAAGTTATGGTGGTTGTGTGTATACGTAG 333 || ||||||||||||||||| ||||||||||||| ||| Sbjct 319 CTGTTGATCCAAGTTATGGTAGTTGTGTGTATACATAG 356 > Ahg925901 jgi|Araly1|925901|scaffold_201462.1 Length=376 Score = 412 bits (223), Expect = 6e-115 Identities = 300/337 (89%), Gaps = 5/337 (1%) Strand=Plus/Plus Query 1 ATGTTTCCGCAATTGTCACTAATTTTTCTTTTCTCTCTCGTTGTAATCCACCCTTTTCAT 60 ||||||||||| ||| ||||||| |||||||||||||| |||||||||||||| ||||| Sbjct 21 ATGTTTCCGCAGTTGACACTAATCTTTCTTTTCTCTCTTGTTGTAATCCACCCCCTTCAT 80 Query 61 GTCTCGGCCAAGACATGGTGTGTGGCAAATACATCGGCGGCAAGTACACTACTACAAGCT 120 ||||| ||||||||||||||||||||||||||||| || ||| ||||| |||||||||| Sbjct 81 GTCTCAGCCAAGACATGGTGTGTGGCAAATACATCCGCAGCACCTACACAACTACAAGCT 140 Query 121 AATATTGATTGGGCATGTAGTGAAGGAAAAGTTGATTGTGTAATGATCAATCCTGGTGGA 180 |||||||||| |||||||| |||||||||||||| |||| || |||||||| |||||| Sbjct 141 AATATTGATTATGCATGTAGCGAAGGAAAAGTTGACTGTGCAAAAATCAATCCCGGTGGA 200 Query 181 CCTTGCTTTGATCCAGATACTGTTATTAGTCATGCATCGTTTGTGATGAATGATTTCTAT 240 |||||||||||||||||||||| |||| |||||||| |||||||||||||||||||| Sbjct 201 GTTTGCTTTGATCCAGATACTGTTCTTAGCCATGCATCATTTGTGATGAATGATTTCTAC 260 Query 241 -AGAAATCACGGGAGCACTGAAGAG---TGTAATTTTAGTGGTACCGGTCAAGTCGTTAC 296 |||| ||| ||||||||||||||| ||||||||||||||||| |||||||||||||| Sbjct 261 CAGAA-TCATGGGAGCACTGAAGAGGCGTGTAATTTTAGTGGTACTGGTCAAGTCGTTAC 319 Query 297 TTTTGATCCAAGTTATGGTGGTTGTGTGTATACGTAG 333 | |||||||||||||||| ||||||||||||| ||| Sbjct 320 TGCTGATCCAAGTTATGGTAGTTGTGTGTATACATAG 356 > Ahg908221 jgi|Araly1|908221|Al_scaffold_0002_1302 Length=336 Score = 412 bits (223), Expect = 6e-115 Identities = 303/340 (89%), Gaps = 11/340 (3%) Strand=Plus/Plus Query 1 ATGTTTCCGCAATTGTCACTAATTTTTCTTTTCTCTCTCGTTGTAATCCACCCTTTTCAT 60 |||||| ||||||| ||||||| || ||| | |||||||||||||||||||| ||||| Sbjct 1 ATGTTTTCGCAATTAACACTAATATTCCTTCTGTCTCTCGTTGTAATCCACCCCCTTCAT 60 Query 61 GTCTCGGCCAAGACATGGTGTGTGGCAAATACATCGGCGGCAAG-TACACTACTACAAGC 119 ||||||||||||||||||||||||||||| ||||||||||| | ||||| ||||||||| Sbjct 61 GTCTCGGCCAAGACATGGTGTGTGGCAAACCCATCGGCGGCA-GCTACACAACTACAAGC 119 Query 120 TAATATTGATTGGGCATGTAGTGAAGGAAA-AGTTGATTGTGTAATGATCAATCCTGGTG 178 ||||||||||||||||||||||| |||||| | ||||||||||||| ||||||||||||| Sbjct 120 TAATATTGATTGGGCATGTAGTGTAGGAAACA-TTGATTGTGTAATCATCAATCCTGGTG 178 Query 179 GACCTTGCTTTGATCCAGATACTGTTATTAGTCATGCATC-GTTTGTGATGAATGATTTC 237 ||||||||||||||||| |||||||||||| |||||||| ||| ||||||||||||| | Sbjct 179 GACCTTGCTTTGATCCAAATACTGTTATTAACCATGCATCAGTT-GTGATGAATGATTAC 237 Query 238 TAT-AGAAATCACGGGAGCACTGAAGAG---TGTAATTTTAGTGGTACCGGTCAAGTCGT 293 || ||| ||||||||||||||||||| |||| |||||||||||| |||||| |||| Sbjct 238 TACCAGAC-TCACGGGAGCACTGAAGAGGCGTGTAGTTTTAGTGGTACTGGTCAAATCGT 296 Query 294 TACTTTTGATCCAAGTTATGGTGGTTGTGTGTATACGTAG 333 || | |||||||||||||||||||||||| |||||||||| Sbjct 297 TAGTGTTGATCCAAGTTATGGTGGTTGTGCGTATACGTAG 336 > Ahg925894 jgi|Araly1|925894|scaffold_201455.1 Length=385 Score = 213 bits (115), Expect = 6e-55 Identities = 274/348 (79%), Gaps = 21/348 (6%) Strand=Plus/Plus Query 1 ATGTTTCCGCAATTGTCACTAATTTTTCTTTTCTCTCTCGTTGTAATCCACCCT-TTTCA 59 ||||||||||||||| |||||| | ||| | |||||||||||||| || ||| |||| Sbjct 24 ATGTTTCCGCAATTGAAACTAATCGTCCTTCTATCTCTCGTTGTAATTCA-CCTCCTTCA 82 Query 60 TGTCTCGGCCAAGACATGGTGTGTGGCAAATACATCGGCGGCAAG-T--AC-ACT---AC 112 ||||| |||||| | |||||||||| || |||| || || || | || ||| || Sbjct 83 TGTCTTGGCCAAAAAATGGTGTGTGTCAGCGGCATCTGC-GCCAGATACACAACTACAAC 141 Query 113 TACAAGCTAATATTGATTGGGCATGTAGTGA-AGGAAAAGTTGATTGTGTAATGATCAAT 171 |||||||||||||||||||||||||||| | |||||||||||| | ||||| |||||| Sbjct 142 TACAAGCTAATATTGATTGGGCATGTAGC-ATAGGAAAAGTTGACTATGTAAAAATCAAT 200 Query 172 CCT-GGTGGACCTTGCTTTGATCCAGATACTGTTATTAGTCATGCATCGTTTGTGATGAA 230 | | |||||| ||||| ||| ||| ||||| || |||||||||||| ||||||||||| Sbjct 201 C-TAGGTGGAGATTGCTATGAACCAAATACTCCTACTAGTCATGCATCATTTGTGATGAA 259 Query 231 TGATTTCTAT-AGAAATCACGGGAGCACTGAAGAG---TGTAATTTTAGTGGTACCGGTC 286 ||||| ||| |||| ||||| | |||||||||| ||| |||| | | ||| |||| Sbjct 260 TGATTACTACCAGAAC-CACGGAAACACTGAAGAGACATGTGATTTCAATCATACTGGTC 318 Query 287 AAGTCGTTACTTTTGATCCAAGTTATGGTGGTTGT-GTGTATACGTAG 333 || | || | ||||||||||||| || ||||| | |||||||||| Sbjct 319 AAATAATTGGTGCTGATCCAAGTTATCGTCGTTGTAG-GTATACGTAG 365 > Ahg925902 jgi|Araly1|925902|scaffold_201463.1 Length=295 Score = 163 bits (88), Expect = 7e-40 Identities = 186/233 (80%), Gaps = 8/233 (3%) Strand=Plus/Plus Query 105 TACACTACTACAAGCTAATATTGATTGGGCATGTAGTGAAGGAAAAGTTGATTGTGTAAT 164 ||||| ||||||||||||||||||||||||||||| ||||| |||| || |||| || Sbjct 38 TACACAACTACAAGCTAATATTGATTGGGCATGTAACGAAGGCCAAGTCGACTGTGCAAA 97 Query 165 GATCAATCCTGGTGGACCT-TGCTTTGATCCAGATACTGTTATTAGTCATGCATCGTTTG 223 |||||||||||||| | | |||| ||| ||| ||||| || ||| |||||||| |||| Sbjct 98 AATCAATCCTGGTGG-CGTATGCTATGAACCAAATACTCCTACTAGCCATGCATCATTTG 156 Query 224 TGATGAATGATTTCTATAGAAATCACGGGAGCACTGAAGAG---TGTAATTTTAGTGGTA 280 ||||||| |||| |||| | | |||||| |||||||||||| ||| |||| | | || Sbjct 157 TGATGAACGATTACTATCGGAGTCACGGAAGCACTGAAGAGGCATGTGATTTCAATCATA 216 Query 281 CCGGTCAAGTCGTTACTTTTGATCCAAGTTATGGTGGTTGT-GTGTAT-ACGT 331 | |||||| | ||| | ||||||||||||| || ||||| | |||| |||| Sbjct 217 CTGGTCAAATTATTAGTGGTGATCCAAGTTATCGTCGTTGTAG-GTATGACGT 268 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 11790077001 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5