BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G66855.1
Length=464
Score E
Sequences producing significant alignments: (Bits) Value
Ahg925894 jgi|Araly1|925894|scaffold_201455.1 364 2e-100
Ahg925902 jgi|Araly1|925902|scaffold_201463.1 353 5e-97
Ahg925901 jgi|Araly1|925901|scaffold_201462.1 324 4e-88
> Ahg925894 jgi|Araly1|925894|scaffold_201455.1
Length=385
Score = 364 bits (197), Expect = 2e-100
Identities = 312/365 (85%), Gaps = 18/365 (5%)
Strand=Plus/Plus
Query 2 AATGATTT-CGCAATTGACACTAATCTTCTTTTTATCTCTCGTTGTAATCCAACCT-TTT 59
|||| ||| ||||||||| ||||||| || || |||||||||||||||| | |||| ||
Sbjct 23 AATG-TTTCCGCAATTGAAACTAATCGTCCTTCTATCTCTCGTTGTAATTC-ACCTCCTT 80
Query 60 CATATTTTGGCCAAGACATGGTGTGTAG-CAGCTGCATCAGCGACAGATACACAACT--- 115
||| | |||||||| | ||||||||| | |||| ||||| ||| |||||||||||||
Sbjct 81 CATGTCTTGGCCAAAAAATGGTGTGT-GTCAGCGGCATCTGCGCCAGATACACAACTACA 139
Query 116 --T-CAAGCTAATATTGATTGGGCATGTAACGA-AGGTAAAGTTGACTGTGTAAAAATTA 171
| ||||||||||||||||||||||||| | | ||| |||||||||| ||||||||| |
Sbjct 140 ACTACAAGCTAATATTGATTGGGCATGTAGC-ATAGGAAAAGTTGACTATGTAAAAATCA 198
Query 172 ATCCT-GGTGGCGTTTGCTATGAACCAAATACTCTTACTAGCCATGCATCATTTGTGATG 230
|| || ||||| | |||||||||||||||||||| |||||| ||||||||||||||||||
Sbjct 199 AT-CTAGGTGGAGATTGCTATGAACCAAATACTCCTACTAGTCATGCATCATTTGTGATG 257
Query 231 AATGATTACTATCGGAATCATGGGAGCATTGAAGAGGCATGTGAATTCAATCATACTGGT 290
||||||||||| | ||| || || | || ||||||| ||||||| |||||||||||||||
Sbjct 258 AATGATTACTACCAGAACCACGGAAACACTGAAGAGACATGTGATTTCAATCATACTGGT 317
Query 291 CAAATCATTAGTGGTGATCCAAGTTATCGTCGTTGTAGGTATTCGTAGAATACAT-GATT 349
||||| ||| ||| |||||||||||||||||||||||||||| ||||||||| || | ||
Sbjct 318 CAAATAATTGGTGCTGATCCAAGTTATCGTCGTTGTAGGTATACGTAGAATATATTG-TT 376
Query 350 TGATG 354
|||||
Sbjct 377 TGATG 381
> Ahg925902 jgi|Araly1|925902|scaffold_201463.1
Length=295
Score = 353 bits (191), Expect = 5e-97
Identities = 247/273 (90%), Gaps = 8/273 (3%)
Strand=Plus/Plus
Query 100 CGACAGATACACAACTTCAAGCTAATATTGATTGGGCATGTAACGAAGGTAAAGTTGACT 159
|||||||||||||||| |||||||||||||||||||||||||||||||| |||| ||||
Sbjct 31 CGACAGATACACAACTACAAGCTAATATTGATTGGGCATGTAACGAAGGCCAAGTCGACT 90
Query 160 GTGTAAAAATTAATCCTGGTGGCGTTTGCTATGAACCAAATACTCTTACTAGCCATGCAT 219
||| |||||| |||||||||||||| ||||||||||||||||||| ||||||||||||||
Sbjct 91 GTGCAAAAATCAATCCTGGTGGCGTATGCTATGAACCAAATACTCCTACTAGCCATGCAT 150
Query 220 CATTTGTGATGAATGATTACTATCGGAATCATGGGAGCATTGAAGAGGCATGTGAATTCA 279
||||||||||||| ||||||||||||| ||| || |||| ||||||||||||||| ||||
Sbjct 151 CATTTGTGATGAACGATTACTATCGGAGTCACGGAAGCACTGAAGAGGCATGTGATTTCA 210
Query 280 ATCATACTGGTCAAATCATTAGTGGTGATCCAAGTTATCGTCGTTGTAGGTATTCGTAGA 339
|||||||||||||||| |||||||||||||||||||||||||||||||||||| | |
Sbjct 211 ATCATACTGGTCAAATTATTAGTGGTGATCCAAGTTATCGTCGTTGTAGGTAT--G-A-- 265
Query 340 ATACATGATTTGATGTATGATTTTGTGATTGGA 372
| || ||||| |||||||||||||||||||
Sbjct 266 ---CGTGGTTTGACGTATGATTTTGTGATTGGA 295
> Ahg925901 jgi|Araly1|925901|scaffold_201462.1
Length=376
Score = 324 bits (175), Expect = 4e-88
Identities = 303/364 (83%), Gaps = 12/364 (3%)
Strand=Plus/Plus
Query 1 CAATGATTT-CGCAATTGACACTAATC-TTCTTTTTATCTCTCGTTGTAATCCAACCTTT 58
||||| ||| |||| |||||||||||| ||| |||| ||||| ||||||||||| || |
Sbjct 19 CAATG-TTTCCGCAGTTGACACTAATCTTTC-TTTTCTCTCTTGTTGTAATCCACCCCCT 76
Query 59 TCATATTTTGGCCAAGACATGGTGTGTAGCAGCTGCATCAGCGA-CAGATACACAACTTC 117
|||| | | ||||||||||||||||| ||| | |||| || | || ||||||||| |
Sbjct 77 TCATGTCTCAGCCAAGACATGGTGTGTGGCAAATACATCCGC-AGCACCTACACAACTAC 135
Query 118 AAGCTAATATTGATTGGGCATGTAACGAAGGTAAAGTTGACTGTGTAAAAATTAATCCTG 177
||||||||||||||| ||||||| |||||| ||||||||||||| |||||| ||||| |
Sbjct 136 AAGCTAATATTGATTATGCATGTAGCGAAGGAAAAGTTGACTGTGCAAAAATCAATCCCG 195
Query 178 GTGGCGTTTGCTATGAACCAAATACTCTTAC-TAGCCATGCATCATTTGTGATGAATGAT 236
|||| ||||||| ||| ||| ||||| || | ||||||||||||||||||||||||||||
Sbjct 196 GTGGAGTTTGCTTTGATCCAGATACTGTT-CTTAGCCATGCATCATTTGTGATGAATGAT 254
Query 237 TACTATCGGAATCATGGGAGCATTGAAGAGGCATGTGAATTCAA-TCATACTGGTCAAAT 295
| ||| | |||||||||||||| ||||||||| ||| |||| | | |||||||||| |
Sbjct 255 TTCTACCAGAATCATGGGAGCACTGAAGAGGCGTGT-AATTTTAGTGGTACTGGTCAAGT 313
Query 296 CATTAGTGGTGATCCAAGTTATCGTCGTTGTAG-GTATTCGTAGAATACATGATTTGATG 354
| ||| || ||||||||||||| || ||||| | |||| | ||||||||||| |||||||
Sbjct 314 CGTTACTGCTGATCCAAGTTATGGTAGTTGT-GTGTATACATAGAATACATGGTTTGATG 372
Query 355 TATG 358
|||
Sbjct 373 AATG 376
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 16788459160
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5