BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G66855.1 Length=464 Score E Sequences producing significant alignments: (Bits) Value Ahg925894 jgi|Araly1|925894|scaffold_201455.1 364 2e-100 Ahg925902 jgi|Araly1|925902|scaffold_201463.1 353 5e-97 Ahg925901 jgi|Araly1|925901|scaffold_201462.1 324 4e-88 > Ahg925894 jgi|Araly1|925894|scaffold_201455.1 Length=385 Score = 364 bits (197), Expect = 2e-100 Identities = 312/365 (85%), Gaps = 18/365 (5%) Strand=Plus/Plus Query 2 AATGATTT-CGCAATTGACACTAATCTTCTTTTTATCTCTCGTTGTAATCCAACCT-TTT 59 |||| ||| ||||||||| ||||||| || || |||||||||||||||| | |||| || Sbjct 23 AATG-TTTCCGCAATTGAAACTAATCGTCCTTCTATCTCTCGTTGTAATTC-ACCTCCTT 80 Query 60 CATATTTTGGCCAAGACATGGTGTGTAG-CAGCTGCATCAGCGACAGATACACAACT--- 115 ||| | |||||||| | ||||||||| | |||| ||||| ||| ||||||||||||| Sbjct 81 CATGTCTTGGCCAAAAAATGGTGTGT-GTCAGCGGCATCTGCGCCAGATACACAACTACA 139 Query 116 --T-CAAGCTAATATTGATTGGGCATGTAACGA-AGGTAAAGTTGACTGTGTAAAAATTA 171 | ||||||||||||||||||||||||| | | ||| |||||||||| ||||||||| | Sbjct 140 ACTACAAGCTAATATTGATTGGGCATGTAGC-ATAGGAAAAGTTGACTATGTAAAAATCA 198 Query 172 ATCCT-GGTGGCGTTTGCTATGAACCAAATACTCTTACTAGCCATGCATCATTTGTGATG 230 || || ||||| | |||||||||||||||||||| |||||| |||||||||||||||||| Sbjct 199 AT-CTAGGTGGAGATTGCTATGAACCAAATACTCCTACTAGTCATGCATCATTTGTGATG 257 Query 231 AATGATTACTATCGGAATCATGGGAGCATTGAAGAGGCATGTGAATTCAATCATACTGGT 290 ||||||||||| | ||| || || | || ||||||| ||||||| ||||||||||||||| Sbjct 258 AATGATTACTACCAGAACCACGGAAACACTGAAGAGACATGTGATTTCAATCATACTGGT 317 Query 291 CAAATCATTAGTGGTGATCCAAGTTATCGTCGTTGTAGGTATTCGTAGAATACAT-GATT 349 ||||| ||| ||| |||||||||||||||||||||||||||| ||||||||| || | || Sbjct 318 CAAATAATTGGTGCTGATCCAAGTTATCGTCGTTGTAGGTATACGTAGAATATATTG-TT 376 Query 350 TGATG 354 ||||| Sbjct 377 TGATG 381 > Ahg925902 jgi|Araly1|925902|scaffold_201463.1 Length=295 Score = 353 bits (191), Expect = 5e-97 Identities = 247/273 (90%), Gaps = 8/273 (3%) Strand=Plus/Plus Query 100 CGACAGATACACAACTTCAAGCTAATATTGATTGGGCATGTAACGAAGGTAAAGTTGACT 159 |||||||||||||||| |||||||||||||||||||||||||||||||| |||| |||| Sbjct 31 CGACAGATACACAACTACAAGCTAATATTGATTGGGCATGTAACGAAGGCCAAGTCGACT 90 Query 160 GTGTAAAAATTAATCCTGGTGGCGTTTGCTATGAACCAAATACTCTTACTAGCCATGCAT 219 ||| |||||| |||||||||||||| ||||||||||||||||||| |||||||||||||| Sbjct 91 GTGCAAAAATCAATCCTGGTGGCGTATGCTATGAACCAAATACTCCTACTAGCCATGCAT 150 Query 220 CATTTGTGATGAATGATTACTATCGGAATCATGGGAGCATTGAAGAGGCATGTGAATTCA 279 ||||||||||||| ||||||||||||| ||| || |||| ||||||||||||||| |||| Sbjct 151 CATTTGTGATGAACGATTACTATCGGAGTCACGGAAGCACTGAAGAGGCATGTGATTTCA 210 Query 280 ATCATACTGGTCAAATCATTAGTGGTGATCCAAGTTATCGTCGTTGTAGGTATTCGTAGA 339 |||||||||||||||| |||||||||||||||||||||||||||||||||||| | | Sbjct 211 ATCATACTGGTCAAATTATTAGTGGTGATCCAAGTTATCGTCGTTGTAGGTAT--G-A-- 265 Query 340 ATACATGATTTGATGTATGATTTTGTGATTGGA 372 | || ||||| ||||||||||||||||||| Sbjct 266 ---CGTGGTTTGACGTATGATTTTGTGATTGGA 295 > Ahg925901 jgi|Araly1|925901|scaffold_201462.1 Length=376 Score = 324 bits (175), Expect = 4e-88 Identities = 303/364 (83%), Gaps = 12/364 (3%) Strand=Plus/Plus Query 1 CAATGATTT-CGCAATTGACACTAATC-TTCTTTTTATCTCTCGTTGTAATCCAACCTTT 58 ||||| ||| |||| |||||||||||| ||| |||| ||||| ||||||||||| || | Sbjct 19 CAATG-TTTCCGCAGTTGACACTAATCTTTC-TTTTCTCTCTTGTTGTAATCCACCCCCT 76 Query 59 TCATATTTTGGCCAAGACATGGTGTGTAGCAGCTGCATCAGCGA-CAGATACACAACTTC 117 |||| | | ||||||||||||||||| ||| | |||| || | || ||||||||| | Sbjct 77 TCATGTCTCAGCCAAGACATGGTGTGTGGCAAATACATCCGC-AGCACCTACACAACTAC 135 Query 118 AAGCTAATATTGATTGGGCATGTAACGAAGGTAAAGTTGACTGTGTAAAAATTAATCCTG 177 ||||||||||||||| ||||||| |||||| ||||||||||||| |||||| ||||| | Sbjct 136 AAGCTAATATTGATTATGCATGTAGCGAAGGAAAAGTTGACTGTGCAAAAATCAATCCCG 195 Query 178 GTGGCGTTTGCTATGAACCAAATACTCTTAC-TAGCCATGCATCATTTGTGATGAATGAT 236 |||| ||||||| ||| ||| ||||| || | |||||||||||||||||||||||||||| Sbjct 196 GTGGAGTTTGCTTTGATCCAGATACTGTT-CTTAGCCATGCATCATTTGTGATGAATGAT 254 Query 237 TACTATCGGAATCATGGGAGCATTGAAGAGGCATGTGAATTCAA-TCATACTGGTCAAAT 295 | ||| | |||||||||||||| ||||||||| ||| |||| | | |||||||||| | Sbjct 255 TTCTACCAGAATCATGGGAGCACTGAAGAGGCGTGT-AATTTTAGTGGTACTGGTCAAGT 313 Query 296 CATTAGTGGTGATCCAAGTTATCGTCGTTGTAG-GTATTCGTAGAATACATGATTTGATG 354 | ||| || ||||||||||||| || ||||| | |||| | ||||||||||| ||||||| Sbjct 314 CGTTACTGCTGATCCAAGTTATGGTAGTTGT-GTGTATACATAGAATACATGGTTTGATG 372 Query 355 TATG 358 ||| Sbjct 373 AATG 376 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 16788459160 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5