BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G66860.1
Length=1499
Score E
Sequences producing significant alignments: (Bits) Value
Ahg475782 jgi|Araly1|475782|fgenesh2_kg.2__912__AT1G66860.1 2150 0.0
Ahg494160 jgi|Araly1|494160|fgenesh2_kg.7__3593__AT5G38200.1 939 0.0
> Ahg475782 jgi|Araly1|475782|fgenesh2_kg.2__912__AT1G66860.1
Length=1448
Score = 2150 bits (1164), Expect = 0.0
Identities = 1341/1424 (94%), Gaps = 21/1424 (1%)
Strand=Plus/Plus
Query 11 AACTCACACTTTATCTTGTGTCTTAGTTCCT--AC-ACATAGAAGATGGGAAATCCTAGC 67
||| ||||| |||||||||||||||||||| || ||||||||||||||||||||||||
Sbjct 1 AACCCACACAATATCTTGTGTCTTAGTTCCTACACAACATAGAAGATGGGAAATCCTAGC 60
Query 68 GTGAATGATCTCTCTCAAGTCCTCCCTCGCGTCCTTGTTGTCTCTAGACGCACTCTTCGC 127
|||||||||||||||||| |||||||||| |||||||| |||||||||||||||||||||
Sbjct 61 GTGAATGATCTCTCTCAAATCCTCCCTCGTGTCCTTGTCGTCTCTAGACGCACTCTTCGC 120
Query 128 AAGAACAAATTTGTTGATTTCGTTGGTGAGTACCATCTTGATCTTATAGTCGAGAACGGT 187
||||||||||| || ||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 121 AAGAACAAATTCGTCGATTTCGTTGGTGAGTACCATCTTGATCTTATAGTCGAGAATGGT 180
Query 188 GCTGTACCGGTGATTGTCCCACGAGTGGCTGGTGTTCACAAGTTACTAGAGAGCTTCAAG 247
||||||||||| ||||| |||||||||||||||||||||||||| |||||||||||||||
Sbjct 181 GCTGTACCGGTAATTGTACCACGAGTGGCTGGTGTTCACAAGTTGCTAGAGAGCTTCAAG 240
Query 248 CCCATCCATGGAGTTCTACTCTGTGAAGGAGAAGACATCGACCCTTCTCTTTACGAGTCC 307
||||||||||||||||| || ||||||||||||||||||||||||||||| ||||||||
Sbjct 241 CCCATCCATGGAGTTCTCCTTTGTGAAGGAGAAGACATCGACCCTTCTCTATACGAGTCT 300
Query 308 GAAATATCGTCCCTTTCACCTCAAGAACTCGACGAGATTCGGAAAACACACGCAAGTGAT 367
|||||||| |||||||||| ||||||||||||| |||||||||||||||| |||||||||
Sbjct 301 GAAATATCTTCCCTTTCACTTCAAGAACTCGACAAGATTCGGAAAACACATGCAAGTGAT 360
Query 368 ACAGCTATCGACAAAGAAAAAGACTCTATTGAGTTTGCCCTCGCAAAGCTCTGCCTTGAA 427
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 361 ACAGCTATCGACAAGGAAAAAGACTCTATTGAGTTTGCCCTCGCAAAGCTCTGCCTAGAA 420
Query 428 CAAAACATTCCTTACTTAGGGATTTGTAGAGGTTCACAGGTTTTGAATGTTGCTTGTGGT 487
|| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 CAGAACATTCCTTACTTGGGGATTTGTAGAGGTTCACAGGTTTTGAATGTTGCTTGTGGT 480
Query 488 GGAAGTCTTTATCAAGACTTGGAGAAAGAGGTCACGATCAAGGTTCCCGAGGAACATAAA 547
||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||| |
Sbjct 481 GGAAGTCTTTATCAAGACTTGGAGAAAGAGGTCACGATCAATGTTCCTGAGGAACATAGA 540
Query 548 AGAAACCATATAGATTATGATGACTATGATGGTTATAGACATGAGGTGAAGATAGTAAAA 607
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 541 AGAAATCATATAGATTATGATGACTATGATGGTTATAGACATGAGGTGAAGATAGTAAAA 600
Query 608 AACAGCCCTTTGCATAAATGGTTCAAAGATTCTTTAGATGAAGAAAAGATGGAGATCTTG 667
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 601 AACAGCCCTTTGCATAAATGGTTCAAAGATTCTTTAGATGAAGACAAGATGGAGATCTTG 660
Query 668 GTCAACAGTTATCACCACCAAGGGGTTAAGAGATTGGCGCAAAGATTTGTGCCAATGGCT 727
||||| ||||||||||||||||||||||| ||||||||||||||||| ||||||||||||
Sbjct 661 GTCAATAGTTATCACCACCAAGGGGTTAAAAGATTGGCGCAAAGATTCGTGCCAATGGCT 720
Query 728 TTTGCTCCTGATGGATTGATTGAAGGGTTTTATGATCCTGATATGTACAATCCTGAAGAG 787
|||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||
Sbjct 721 TTTGCTCCTGATGGATTGATCGAAGGGTTTTATGATCCCGATATGTACAATCCTGAAGAG 780
Query 788 GGAAAGTTCCTAATGGGTTTACAGTTTCATCCAGAGAGAATGAGGAAGAATGGTAGCGAT 847
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 781 GGAAAGTTCCTAATGGGTTTACAGTTTCATCCAGAGAGAATGAGAAAGAATGGTAGCGAT 840
Query 848 GAATTTGATTTCCCTGGTTGTCCTGTTGCTTATCAGGAATTTGCAAAAGCAGTGATTGCA 907
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 841 GAATTTGATTTCCCTGGTTGTCCTGTTGCTTATCAGGAATTTGCAAAAGCAGTGATTGCT 900
Query 908 TGTCAAAAGAAGGTGAATAGTTTCTTGTCTGTTCCTAAGAAATTGGAACTCAATCCAGAA 967
|||||||||||| ||||| | ||||||||||| |||||||||||||||
Sbjct 901 TGTCAAAAGAAG-----------CTTGT-T---CCTAAGAAATTAGAACTCAATCCAGAA 945
Query 968 ATGGAGAACAAAAGAAAGATACTTGTCAGGAGCTTCTCGCTTGCGAGGTCTATGTACACC 1027
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 946 ATGGAGAAAAAAAGAAAGATACTTGTCAGGAGCTTCTCGCTTGCGAGGTCTATGTACACA 1005
Query 1028 AGATCTCATTCGTTGAAGAACCAATCCACAGAATCAGAACTTGAAGTTGGAGCTGAGTTT 1087
|||||| |||||||||| |||||||||| ||||||||||||||| |||||||||||||||
Sbjct 1006 AGATCTTATTCGTTGAATAACCAATCCAGAGAATCAGAACTTGACGTTGGAGCTGAGTTT 1065
Query 1088 CTTGAGTCAAATACCGCTCTAAGTGTACAACAAGAGATGAGGTTAAAAGAGATGGGAGCG 1147
||||||||||||||||||||||||||||| |||||||||||| |||| ||||||||||||
Sbjct 1066 CTTGAGTCAAATACCGCTCTAAGTGTACAGCAAGAGATGAGGCTAAAGGAGATGGGAGCG 1125
Query 1148 ACTATGAGGAATGGTGGATCATTTACGGAAAAGCTTAGGCTTGATGAAAAGAAGCAGAGG 1207
|| |||||||| |||||||||||||||||||||||||| || ||||| |||||||||||
Sbjct 1126 ACGATGAGGAACGGTGGATCATTTACGGAAAAGCTTAGAATTCATGAAGAGAAGCAGAGG 1185
Query 1208 AAGGCTATGAACATAATGAAGAACATGAACATTGAGCGACTCTCTGAGCTCATGGCTTTC 1267
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1186 AAGGCTATGAACATAATGAAGAACATGAACGTTGAGCGACTCTCTGAGCTCATGGCTTTC 1245
Query 1268 TACCACTTGATGGGGAAGATCTCTAGTGAGGTGTTGGAGAGAAAGCTTCATGCTTCAGTC 1327
||||||||||||||||||||||||||||||||||||||||||||||| | ||| ||||||
Sbjct 1246 TACCACTTGATGGGGAAGATCTCTAGTGAGGTGTTGGAGAGAAAGCTACGTGCCTCAGTC 1305
Query 1328 AGTGACCTCAATCTAACTCCTCAATGACGTCTCAAA-TAATGATGATGAATGTTTAAATT 1386
| |||||||||||| ||| ||||||||||||||||| | |||||||||||||||||||||
Sbjct 1306 AATGACCTCAATCTCACTTCTCAATGACGTCTCAAAATGATGATGATGAATGTTTAAATT 1365
Query 1387 TGGCTTTTCAATTGTTTTTGTGTGTGTTTTAAGTTACTTTGTGC 1430
||||||||||| | ||||| ||||||||| ||||||||||||||
Sbjct 1366 TGGCTTTTCAAAT-TTTTT-TGTGTGTTTAAAGTTACTTTGTGC 1407
> Ahg494160 jgi|Araly1|494160|fgenesh2_kg.7__3593__AT5G38200.1
Length=1399
Score = 939 bits (508), Expect = 0.0
Identities = 1026/1273 (81%), Gaps = 48/1273 (4%)
Strand=Plus/Plus
Query 69 TGAATGATCTCTCTCAAGTCCTCCCTCGCGTCCTTGTTGTCTCTAGACGCACTC-TTCGC 127
||||||||||||||||| |||||||||| ||||| || |||||||||||||| | ||||
Sbjct 73 TGAATGATCTCTCTCAAATCCTCCCTCGTGTCCTCGTCGTCTCTAGACGCAC-CGTTCGT 131
Query 128 AAGAACAAATTTGTTGATTTCGTTGGTGAGTACCATCTTGATCTT-ATAGT-CGAGAACG 185
|| |||||||| || |||||||||||||| || ||||||||| || ||||| || |||
Sbjct 132 AAAAACAAATTCGTCGATTTCGTTGGTGAATATCATCTTGAT-TTGATAGTACG-TTACG 189
Query 186 G-TGCTGTACCGGTGATTGTCCCACGAGTGGCTGGTGTTCACAAGTTACTAGAGAGCTTC 244
| || |||||| |||||||| ||| |||| |||||||||||| |||||| ||||||||
Sbjct 190 GATG-TGTACCAGTGATTGTACCAAGAGTAACTGGTGTTCACATGTTACTTGAGAGCTTT 248
Query 245 AAGCCCATCCATGGAGTTCTACTCTGTGAAGGAGAAGACATCGACCCTTCTCTTTACGAG 304
|| || || ||||||||| |||| |||||||||||||| || || ||||||||||| ||
Sbjct 249 AAACCAATTCATGGAGTTTTACTTTGTGAAGGAGAAGATATTGATCCTTCTCTTTATGAA 308
Query 305 TCCGAAATATCGTCCCTTTCACCTCAAGAAC-TCGACGAGATTCGGA-AAACACACGCAA 362
|| |||||||| || ||||| ||| |||| | || | |||||| || ||||||| || |
Sbjct 309 TCTGAAATATCTTCTCTTTCTCCTGAAGAGCTTC-AAGAGATT-AGAGAAACACATGCTA 366
Query 363 GTGATACAGCTATCGACAAAGAAAAAGACTCTATTGAGTTTGCCCTCGCAAAGCTCTGCC 422
||||||||||||| || ||||| ||||| || |||||||| | || || ||||| || |
Sbjct 367 GTGATACAGCTATTGATAAAGAGAAAGATTCCATTGAGTTAGGTCTTGCTAAGCTTTGTC 426
Query 423 TTGAACAAAACATTCCTTACTTAGGGATTTGTAGAGGTTCACAGGTTTTGAATGTTGCTT 482
||||||| ||||||||||||||||| || || ||||| ||||| |||||||||||||||
Sbjct 427 TTGAACAGAACATTCCTTACTTAGGAATCTGCAGAGGATCACAAATTTTGAATGTTGCTT 486
Query 483 GTGGTGGAAGTCTTTATCAAGACTTGGAGAAAGAGGTCACG-ATCAAGGTT-CCCGAGGA 540
||||||| | |||||||| ||| || |||||||| | ||| || || ||| || || ||
Sbjct 487 GTGGTGGGACTCTTTATCTAGATTTAGAGAAAGAACTAACGAAT-AA-GTTACCGGAAGA 544
Query 541 ACATAA-AA-GAAACCATATAGATTATGATGACTATGATGGTTATAGACATGAGGTGAAG 598
|| || || |||| ||||| ||||||||| |||||||||| ||||||||| |||| |
Sbjct 545 AC-GAAGAACGAAA-CATATCGATTATGATAACTATGATGGACATAGACATGTTGTGAGG 602
Query 599 ATAGTAAAAAACAG-CC-CTTTGCATAAATGGTTCAAAGATTCTTTAGATGAAGA-AAAG 655
|| || | ||||| || | || ||| ||||| |||||||| | |||| || |||
Sbjct 603 ATTGTTGAGAACAGTCCAC-TT-CATTCTTGGTTTAAAGATTCACTGGATGGTGATAAA- 659
Query 656 ATGGAGATCTTGGTCAACAGTTATCACCACCAAGGGGTTAAGAGATTGGCGCAAAGATTT 715
|||||||| || || || |||||||| || ||||| |||||||||||||| || ||||||
Sbjct 660 ATGGAGATTTTAGTTAATAGTTATCATCATCAAGGTGTTAAGAGATTGGCACAGAGATTT 719
Query 716 GTGCCAATGGCTTTTGCTCCTGATGGATTGATTGAAGGGTTTTATGATCCTGATATGTAC 775
||||||||||| |||||| |||||||||| || ||||| ||||| ||||| ||| |||
Sbjct 720 GTGCCAATGGCGTTTGCTTCTGATGGATTAATGGAAGGTTTTTACGATCCGGATGCGTAT 779
Query 776 AATCCTGAAG-AGGGAAAGTTCCTAATGGGTTTACAGTTTCATCCAGAGAGAATGAGG-A 833
||||| |||| |||| |||||| |||||||||||||||||||||||||||||||||| |
Sbjct 780 AATCCCGAAGAAGGG-AAGTTCATAATGGGTTTACAGTTTCATCCAGAGAGAATGAGACA 838
Query 834 AGAATGGTAGCGATGAATTTGATT-TCCCTGGTTGTCCTGTTGCTTATCAGGAATTTGCA 892
| | || | ||||| ||||||| ||| ||||||||||| |||||||||||| ||||||
Sbjct 839 ACA-TGATCTTGATGAGTTTGATTATCC-TGGTTGTCCTGCTGCTTATCAGGAGTTTGCA 896
Query 893 AAAGCAGTGATTGCATGTCAAAAGAAGGTGAATAGTTTC-TTGTCTGTTCCTAAGAAATT 951
|| || |||||||| | ||| |||||| ||||||| | | ||||| ||||| |||| |||
Sbjct 897 AAGGCGGTGATTGCGTATCAGAAGAAGCTGAATAGCT-CATTGTCGGTTCCAAAGACATT 955
Query 952 GGAA-CTCAATCCAGAAATGGAGAACAAAAGAAAGATACTTGTCAGGAGCTTCTCGCTTG 1010
| || || || ||||||||||| ||||||||||||||||| ||||| ||||| ||||
Sbjct 956 G-AAGCTTGATAGTGAAATGGAGAATAAAAGAAAGATACTTGTTAGGAGTTTCTCACTTG 1014
Query 1011 CGAGGTCTATGTACACCAGATCT-CATTCGTTG-AAGAAC-CAATCCACAGAATCAGAAC 1067
| | || ||||||| ||| | | | | | | |||||| || || | |||||||||||
Sbjct 1015 CTAAGTATATGTACGTTAGAGGTTC-TCC-TGGGAAGAACTCA-TCAAAAGAATCAGAAC 1071
Query 1068 TTGAAGTTGGAGCTGAGTTTCTTGAGTCAAATACCGCTCTAAGTGTACAACAAGAGATGA 1127
| ||||||||||| |||||||||||||| || || || || || | | ||||||||||
Sbjct 1072 TCGAAGTTGGAGCCGAGTTTCTTGAGTCCAACACGGCGCTGAGCGCGGAGCAAGAGATGA 1131
Query 1128 GGTTAAAAGAGATGGGAGCGACTATGAGGAATGGTGGATCATTTACGGAAAAGCTT-AG- 1185
|| | || |||||||||||||| |||| || || ||||||| || | ||||| || |
Sbjct 1132 GGCTGAAGGAGATGGGAGCGACGGTGAGAAACGGAGGATCATATATGAAAAAG-TTGAAA 1190
Query 1186 GCTTGATGAAAAGAAGCAGAGGAAGGCTATGAACATAATGAAGAACATGAACATTGAGCG 1245
| | || || | |||||||||| ||| | |||||| ||||| || |||||||| ||||
Sbjct 1191 G-TAGACGAGGATAAGCAGAGGATGGCGAGGAACATGATGAACAAGATGAACATAGAGCA 1249
Query 1246 ACTCTCTGAGCTCATGGC-TTTCTACCACTTGATGGGGAAGATCTCTAGTGAGGTGTTGG 1304
|||||| ||||| ||||| ||| || || |||||||| || |||| | | || || ||||
Sbjct 1250 ACTCTCAGAGCTTATGGCATTT-TATCATTTGATGGGTAATATCTGTGGAGAAGTTTTGG 1308
Query 1305 AGAGAAAGCTTCA 1317
|||||||||||||
Sbjct 1309 AGAGAAAGCTTCA 1321
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 56106930885
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5