BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G66870.1
Length=1485
Score E
Sequences producing significant alignments: (Bits) Value
Ahg925901 jgi|Araly1|925901|scaffold_201462.1 501 6e-141
Ahg925906 jgi|Araly1|925906|scaffold_201467.1 490 1e-137
Ahg908221 jgi|Araly1|908221|Al_scaffold_0002_1302 399 2e-110
Ahg925894 jgi|Araly1|925894|scaffold_201455.1 289 5e-77
Ahg475782 jgi|Araly1|475782|fgenesh2_kg.2__912__AT1G66860.1 217 2e-55
> Ahg925901 jgi|Araly1|925901|scaffold_201462.1
Length=376
Score = 501 bits (271), Expect = 6e-141
Identities = 342/377 (91%), Gaps = 2/377 (1%)
Strand=Plus/Plus
Query 1072 ttCACAAGTAAAACACCACAATGTTTCCGCAATTGACAGTTGTATTCCTTTTCTCTCTCG 1131
||||||||||||||||||||||||||||||| |||||| | | || ||||||||||| |
Sbjct 1 TTCACAAGTAAAACACCACAATGTTTCCGCAGTTGACACTAATCTTTCTTTTCTCTCTTG 60
Query 1132 TTGTAATCCACCCTCTTCATGTCTCGGCCAAAACATGGTGTGTGGCAAATGTATCGGCGG 1191
||||||||||||| ||||||||||| ||||| |||||||||||||||||| ||| || |
Sbjct 61 TTGTAATCCACCCCCTTCATGTCTCAGCCAAGACATGGTGTGTGGCAAATACATCCGCAG 120
Query 1192 CAAGTACACAATTACAAGCTAATATTGATTGGGCATGTAGTGAAGGAAAAGTTGATTGTG 1251
|| ||||||| |||||||||||||||||| |||||||| |||||||||||||| ||||
Sbjct 121 CACCTACACAACTACAAGCTAATATTGATTATGCATGTAGCGAAGGAAAAGTTGACTGTG 180
Query 1252 CAACAATCAATCCTGGTGGA-TCTTGCTTTGATCCGGATACTCTTGTTAGTCATGCATCA 1310
||| ||||||||| |||||| | |||||||||||| |||||| || |||| |||||||||
Sbjct 181 CAAAAATCAATCCCGGTGGAGT-TTGCTTTGATCCAGATACTGTTCTTAGCCATGCATCA 239
Query 1311 TTTGTGATGAATGATTTCTACCAGAATCACGGAAGCACTGAAGAGGCGTGTAATTTTACT 1370
||||||||||||||||||||||||||||| || ||||||||||||||||||||||||| |
Sbjct 240 TTTGTGATGAATGATTTCTACCAGAATCATGGGAGCACTGAAGAGGCGTGTAATTTTAGT 299
Query 1371 GGTACTGGTCAAGTCGTTACTGCTGATCCAAGTTATGGTAGTTGTGTGTATACATAGATT 1430
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 300 GGTACTGGTCAAGTCGTTACTGCTGATCCAAGTTATGGTAGTTGTGTGTATACATAGAAT 359
Query 1431 ACATAGTTTAATGAATG 1447
|||| |||| |||||||
Sbjct 360 ACATGGTTTGATGAATG 376
> Ahg925906 jgi|Araly1|925906|scaffold_201467.1
Length=376
Score = 490 bits (265), Expect = 1e-137
Identities = 341/378 (90%), Gaps = 4/378 (1%)
Strand=Plus/Plus
Query 1072 ttCACAAGTAAAACACCACAATGTTTCCGCAATTGACAGTTGTATTCCTTTTCTCTCTCG 1131
|||||||||||||||||||||||||||||||||||||| | | || ||||||||||| |
Sbjct 1 TTCACAAGTAAAACACCACAATGTTTCCGCAATTGACACTAATCTTTCTTTTCTCTCTTG 60
Query 1132 TTGTAATCCACCCTCTTCATGTCTCGGCCAAAACATGGTGTGTGGCAAATGTATCGGCGG 1191
||||||||||||| ||||||||||| ||||| |||||||||||||||||| ||| || |
Sbjct 61 TTGTAATCCACCCCCTTCATGTCTCAGCCAAGACATGGTGTGTGGCAAATACATCTGCAG 120
Query 1192 CAAGTACACAATTACAAGCTAATATTGATTGGGCATGTAGTGAAGGAAAAGTTGATTGTG 1251
|| ||||||| |||||||||||||||||| |||||||| |||||||||||||||||||
Sbjct 121 CACCTACACAACTACAAGCTAATATTGATTATGCATGTAGCGAAGGAAAAGTTGATTGTG 180
Query 1252 CAACAATCAATCCTGGTGGA-TCTTGCTTTGATCCGGATACTCTTGTTAG-TCATGCATC 1309
|| ||||||||| |||||| | |||||||||||| |||||| || |||| | |||||||
Sbjct 181 TAAAAATCAATCCCGGTGGAGT-TTGCTTTGATCCAGATACTGTTCTTAGCT-ATGCATC 238
Query 1310 ATTTGTGATGAATGATTTCTACCAGAATCACGGAAGCACTGAAGAGGCGTGTAATTTTAC 1369
|||||||||||||||||||||||||||||| || |||||||||||||||||||||||||
Sbjct 239 ATTTGTGATGAATGATTTCTACCAGAATCATGGGAGCACTGAAGAGGCGTGTAATTTTAG 298
Query 1370 TGGTACTGGTCAAGTCGTTACTGCTGATCCAAGTTATGGTAGTTGTGTGTATACATAGAT 1429
||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 299 TGGTACTGGTCAAATCGTTACTGTTGATCCAAGTTATGGTAGTTGTGTGTATACATAGAA 358
Query 1430 TACATAGTTTAATGAATG 1447
||||| |||| |||||||
Sbjct 359 TACATGGTTTGATGAATG 376
> Ahg908221 jgi|Araly1|908221|Al_scaffold_0002_1302
Length=336
Score = 399 bits (216), Expect = 2e-110
Identities = 299/339 (88%), Gaps = 6/339 (2%)
Strand=Plus/Plus
Query 1092 ATGTTTCCGCAATTGACAGTTGTATTCCTTTTCTCTCTCGTTGTAATCCACCCTCTTCAT 1151
|||||| ||||||| ||| | |||||||| | |||||||||||||||||||| ||||||
Sbjct 1 ATGTTTTCGCAATTAACACTAATATTCCTTCTGTCTCTCGTTGTAATCCACCCCCTTCAT 60
Query 1152 GTCTCGGCCAAAACATGGTGTGTGGCAAATGTATCGGCGGCAAG-TACACAATTACAAGC 1210
||||||||||| ||||||||||||||||| ||||||||| || ||||||| |||||||
Sbjct 61 GTCTCGGCCAAGACATGGTGTGTGGCAAACCCATCGGCGGC-AGCTACACAACTACAAGC 119
Query 1211 TAATATTGATTGGGCATGTAGTGAAGGAAA-AGTTGATTGTGCAA-CAATCAATCCTGGT 1268
||||||||||||||||||||||| |||||| | ||||||||| || || |||||||||||
Sbjct 120 TAATATTGATTGGGCATGTAGTGTAGGAAACA-TTGATTGTGTAATCA-TCAATCCTGGT 177
Query 1269 GGATCTTGCTTTGATCCGGATACTCTTGTTAGTCATGCATCATTTGTGATGAATGATTTC 1328
||| ||||||||||||| ||||| || ||| ||||||||| ||||||||||||||| |
Sbjct 178 GGACCTTGCTTTGATCCAAATACTGTTATTAACCATGCATCAGTTGTGATGAATGATTAC 237
Query 1329 TACCAGAATCACGGAAGCACTGAAGAGGCGTGTAATTTTACTGGTACTGGTCAAGTCGTT 1388
||||||| |||||| ||||||||||||||||||| ||||| ||||||||||||| |||||
Sbjct 238 TACCAGACTCACGGGAGCACTGAAGAGGCGTGTAGTTTTAGTGGTACTGGTCAAATCGTT 297
Query 1389 ACTGCTGATCCAAGTTATGGTAGTTGTGTGTATACATAG 1427
| || |||||||||||||||| |||||| |||||| |||
Sbjct 298 AGTGTTGATCCAAGTTATGGTGGTTGTGCGTATACGTAG 336
> Ahg925894 jgi|Araly1|925894|scaffold_201455.1
Length=385
Score = 289 bits (156), Expect = 5e-77
Identities = 313/387 (81%), Gaps = 17/387 (4%)
Strand=Plus/Plus
Query 1071 attCACAAGTAAAACACCACAATGTTTCCGCAATTGACAGTTGTATTCCTTTTCTCTCTC 1130
||| ||||| |||||||| ||||||||||||||||| | | | ||||| | ||||||
Sbjct 4 ATTTACAAG-CAAACACCAAAATGTTTCCGCAATTGAAACTAATCGTCCTTCTATCTCTC 62
Query 1131 GTTGTAATCCACCCT-CTTCATGTCTCGGCCAAAACATGGTGTGTGGCAAATGTATCGGC 1189
|||||||| || ||| |||||||||| |||||||| |||||||||| || | ||| ||
Sbjct 63 GTTGTAATTCA-CCTCCTTCATGTCTTGGCCAAAAAATGGTGTGTGTCAGCGGCATCTGC 121
Query 1190 GGCAAG-TACACAA-T-----TACAAGCTAATATTGATTGGGCATGTAGTGA-AGGAAAA 1241
|| || ||||||| | |||||||||||||||||||||||||||| | |||||||
Sbjct 122 -GCCAGATACACAACTACAACTACAAGCTAATATTGATTGGGCATGTAGC-ATAGGAAAA 179
Query 1242 GTTGATTGTGCAACAATCAATCCT-GGTGGATCTTGCTTTGATCCGGATACTCTTGTTAG 1300
||||| | || || |||||||| | |||||| ||||| ||| || |||||| | |||
Sbjct 180 GTTGACTATGTAAAAATCAATC-TAGGTGGAGATTGCTATGAACCAAATACTCCTACTAG 238
Query 1301 TCATGCATCATTTGTGATGAATGATTTCTACCAGAATCACGGAAGCACTGAAGAGGCGTG 1360
|||||||||||||||||||||||||| ||||||||| ||||||| |||||||||| | ||
Sbjct 239 TCATGCATCATTTGTGATGAATGATTACTACCAGAACCACGGAAACACTGAAGAGACATG 298
Query 1361 TAATTTTACTGGTACTGGTCAAGTCGTTACTGCTGATCCAAGTTATGGTAGTTGT-GTGT 1419
| |||| | | |||||||||| | || |||||||||||||||| || ||||| | ||
Sbjct 299 TGATTTCAATCATACTGGTCAAATAATTGGTGCTGATCCAAGTTATCGTCGTTGTAG-GT 357
Query 1420 ATACATAGATTACATAGTTTAATGAAT 1446
|||| |||| || || |||| ||||||
Sbjct 358 ATACGTAGAATATATTGTTTGATGAAT 384
> Ahg475782 jgi|Araly1|475782|fgenesh2_kg.2__912__AT1G66860.1
Length=1448
Score = 217 bits (117), Expect = 2e-55
Identities = 153/170 (90%), Gaps = 4/170 (2%)
Strand=Plus/Minus
Query 1 GCCATGAGCTCAGAGAGTCGCTCAAAGTTCATGTTCTTCATTATGTTCATAGCCTTCCTC 60
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1241 GCCATGAGCTCAGAGAGTCGCTCAACGTTCATGTTCTTCATTATGTTCATAGCCTTCCTC 1182
Query 61 TACTTCTCCTT-ATCAAGCCTAAGGTTTTTCGTAAATGATCTC-CCGTTCCTCATCATTA 118
| |||||| || || || ||||| |||| ||||||||||| | |||||||||||| |
Sbjct 1181 TGCTTCTC-TTCATGAATTCTAAGCTTTTCCGTAAATGATC-CACCGTTCCTCATCGTCG 1124
Query 119 CTCCCATCTCCTTTAGCCTCATCTCTTGCTGTGCACTTAGAGTAGTATTT 168
|||||||||||||||||||||||||||||||| ||||||||| ||||||
Sbjct 1123 CTCCCATCTCCTTTAGCCTCATCTCTTGCTGTACACTTAGAGCGGTATTT 1074
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 55573667455
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5