BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G66880.1
Length=4064
Score E
Sequences producing significant alignments: (Bits) Value
Ahg925909 jgi|Araly1|925909|scaffold_201470.1 1271 0.0
Ahg338919 jgi|Araly1|338919|fgenesh1_pg.C_scaffold_2001018 743 0.0
Ahg908230 jgi|Araly1|908230|Al_scaffold_0002_1311 542 9e-153
Ahg908232 jgi|Araly1|908232|Al_scaffold_0002_1313 340 4e-92
Ahg475786 jgi|Araly1|475786|fgenesh2_kg.2__916__AT1G66930.1 241 4e-62
Ahg475782 jgi|Araly1|475782|fgenesh2_kg.2__912__AT1G66860.1 135 2e-30
Ahg908243 jgi|Araly1|908243|Al_scaffold_0002_1324 130 9e-29
> Ahg925909 jgi|Araly1|925909|scaffold_201470.1
Length=2310
Score = 1271 bits (688), Expect = 0.0
Identities = 913/1018 (90%), Gaps = 30/1018 (3%)
Strand=Plus/Plus
Query 2248 GATGATAGTGATGAT-GATAGAAGTTACTATGTGACGAGAAACCTCTCGTTTCCTCCAC- 2305
||||| | ||||||| || |||| ||||||||||||||||||||||| || ||| ||
Sbjct 767 GATGAGACTGATGATAGA-AGAAATTACTATGTGACGAGAAACCTCTTGTCCCCTGTACT 825
Query 2306 TC-AGTGA-GATTAATGACCTTTTATACGACTTCAGTCA-ATCTTGCGA-TAGAAACGTC 2361
|| || || | ||||| | |||| |||||||||| | || |||| | |||||||||
Sbjct 826 TCAAGGGATCAGTAATG--C-TTTAAACGACTTCAG-GAGATTTTGC-AGTAGAAACGTT 880
Query 2362 AGTATTCCCGCATCT-GGATCGACGCTTAACATACT-GCAGAGCACTCCGAGTAAC-GAT 2418
||||||||||||||| | || |||| | ||| || | |||||||||| ||| || |||
Sbjct 881 AGTATTCCCGCATCTATAACCG-CGCTGAGCATGCTAG-AGAGCACTCCAAGT-ACAGAT 937
Query 2419 AATCTAAAGAAGGCTCTCGAATACGGTTTCGAGCTTGAACTTAAC-CAAGATTGTCGGAC 2477
|||||||||||||| || ||| | |||||||||||| || ||||| | ||||||||||||
Sbjct 938 AATCTAAAGAAGGCACTTGAAGATGGTTTCGAGCTTCAAGTTAACTC-AGATTGTCGGAC 996
Query 2478 GTGCATAGACTCTAAGGGTGCTTGTGGATATAGTCAAACCTCAAGTAGATTCGTCTGCTA 2537
||||||||||||||||||||||||||||| ||||||||||||||||| ||||| |||||
Sbjct 997 GTGCATAGACTCTAAGGGTGCTTGTGGATTTAGTCAAACCTCAAGTAAATTCGAATGCTA 1056
Query 2538 TTCTATAGAAGAGCCACAAACCCCTACTCCACCA-A-AC-CCTACTAGAAACAAGGATAC 2594
|| ||||||| ||||||||| ||| ||| | | | | || |||||||||||||||
Sbjct 1057 TTATATAGAAAAGCCACAAA-CCC--CTCAAGTAGATTCGTCTGCTAGAAACAAGGATA- 1112
Query 2595 AA-GCCTCTCTATTGGAGCAAAAGCAGGCATTGCGGTTGCTTCTGTATCGGGTTTGGCCA 2653
|| ||||||||| |||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1113 AAGGCCTCTCTAAAGGAGCAAAAGCAGGCATTGCTGTTGCTTCTGTATCGGGTTTGGCCA 1172
Query 2654 TTCTTCTACTCGCAGGTTTGTTCTTATGCATCAGACGGAGAAGGAAGACTCAGGACGCTC 2713
||||| ||||||||||| |||||||||||||||||||||||||||||||||| ||||||
Sbjct 1173 TTCTTATACTCGCAGGTGTGTTCTTATGCATCAGACGGAGAAGGAAGACTCAAGACGCTG 1232
Query 2714 AATACACAAGCAAAAGCTTGCCTATCACATCATACTCGAGTAGAGATACATCAAGAAATC 2773
||||| ||| |||||||||||| || |||||||| ||||||||||| |||||||||||||
Sbjct 1233 AATACTCAAACAAAAGCTTGCCCATAACATCATATTCGAGTAGAGAAACATCAAGAAATC 1292
Query 2774 CAACTTCCACAACAATCTCCTCCAGTAGCAATCACTCTCTTCTTCCCTCAATCTCTAACC 2833
||||||||||||||||||||| ||||||||| |||||| |||||||||||||||||||||
Sbjct 1293 CAACTTCCACAACAATCTCCTACAGTAGCAACCACTCTTTTCTTCCCTCAATCTCTAACC 1352
Query 2834 TTGCAAACCGAAGCGACTACTGTGGAGTCCAAGTCTTTAGCTATGAAGAACTTGAAGAAG 2893
| |||||| |||||||||||| ||| || || ||||| ||||||||||||||||||||||
Sbjct 1353 TCGCAAACGGAAGCGACTACTATGGTGTTCAGGTCTTCAGCTATGAAGAACTTGAAGAAG 1412
Query 2894 CAACTGAGAATTTCTCTAGAGAACTCGGGGATGGTGGCTTCGGTACTGTCTACTACGGCG 2953
|||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||
Sbjct 1413 CAACTGAGAATTTCTCTAGAGAACTCGGAGATGGCGGCTTCGGTACTGTCTACTACGGCG 1472
Query 2954 TGTTGAAAGACGGACGAGCTGTAGCAGTGAAACGACTCTACGAAAGATCACTAAAACGCG 3013
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1473 TGTTGAAAGATGGACGAGCTGTAGCAGTGAAACGACTCTACGAAAGATCACTAAAACGCG 1532
Query 3014 TAGAACAATTCAAGAACGAAATCGAAATCTTGAAATCACTAAAACATCCGAACCTCGTGA 3073
|||||||||||||||||||||||||||||||||| || |||||||||||||| |||||||
Sbjct 1533 TAGAACAATTCAAGAACGAAATCGAAATCTTGAAGTCCCTAAAACATCCGAATCTCGTGA 1592
Query 3074 TCCTCTACGGATGCACATCAAGACACAGCAGAGAGCT-TCTACTAGTCTACGAATACATC 3132
||||||||||||||||||||||||||||||||||||| | |||| |||||||| ||||||
Sbjct 1593 TCCTCTACGGATGCACATCAAGACACAGCAGAGAGCTAT-TACTCGTCTACGAGTACATC 1651
Query 3133 TCAAACGGAACTCTAGCCGAACATCTACACGGCAACCGCGCAGAAGCTCGTCCTCTCTGC 3192
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||
Sbjct 1652 TCAAACGGAACTCTAGCCGAACATCTCCACGGCAACCGCGCAGAAGCTCGTCCTCTTTGC 1711
Query 3193 TGGTCAACCCGATTAAACATCGCAATCGAAACCGCAAGCGCATTATCATTCCTCCACA 3250
|||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||
Sbjct 1712 TGGTCAACCCGATTAAACATCGCAATCGAAACCGCAAGTGCATTATCCTTCCTCCACA 1769
Score = 850 bits (460), Expect = 0.0
Identities = 574/629 (91%), Gaps = 8/629 (1%)
Strand=Plus/Plus
Query 1240 GCTAAGTTTCAGTGTGGGAACATCACCGCTGGTTTCCCTTTCTCCGGTGGGAATCGTCCT 1299
||| |||||||||||||| |||| || ||||||||||| ||||||||||||| ||||||
Sbjct 125 GCTCAGTTTCAGTGTGGGGACATAACGGCTGGTTTCCCCTTCTCCGGTGGGAGTCGTCCC 184
Query 1300 CAAATTTGCGGTCATCCATCGTTGGAGCTTCACTGCTATAACAACATGGCCTCTATAATC 1359
||||||||||||||||||||| ||| ||||||||||| |||||||| | |||||||||||
Sbjct 185 CAAATTTGCGGTCATCCATCGCTGGTGCTTCACTGCTTTAACAACAAGACCTCTATAATC 244
Query 1360 ATCTCAGACCACTTTTACAATGTTCTCCATATAGATCAAACATCTAACACTCTTAGACTT 1419
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 245 ATCTCAGACCATTTTTACAATGTTCTCCATATAGATCAAACATCTAACACTCTTAGACTC 304
Query 1420 GCTAGAGCAGAGCTGGAAGGTTCTTTTTGCAACGCTACTTACACAGCCACAACCTTGCCT 1479
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 305 GCTAGAGCAGAGCTTGAAGGTTCTTTTTGCAACGCTACTTACACAGCCACAACCTTGCCT 364
Query 1480 TCCAAAATCTTTGAGATTTCATCAACCTACAAGAGCCTCACTGTTTTCTACCTCTGCGAC 1539
||| | || |||||| |||| || ||||||| |||||||||||||||||||||||||||
Sbjct 365 TCCGATATTTTTGAGCTTTCGTCGACCTACACGAGCCTCACTGTTTTCTACCTCTGCGAT 424
Query 1540 CCTAAGGTTTCTTACCGTTCGAGTTATACATGTCCTGGTAGAGGCCTTGTCTCAGTGTCT 1599
|||||| ||||||||||||| ||||||||||||||||||||||||||| |||||||||||
Sbjct 425 CCTAAGCTTTCTTACCGTTCAAGTTATACATGTCCTGGTAGAGGCCTTATCTCAGTGTCT 484
Query 1600 CAAAATTCT-GATTACCA-TAACTCCTGCCAAGACAGTTTCACGATTAACGTTCCAAAGA 1657
||||| || |||||| | || |||||||||||||||||||| ||||||||||||||||
Sbjct 485 CAAAAC-CTTGATTACAAGTAT-TCCTGCCAAGACAGTTTCACAATTAACGTTCCAAAGA 542
Query 1658 GCTTTGTTCCAGAAGAGAAAGAGTTGGATGTGACCAATTTGGAAA-GTGCTTTA-AGAGA 1715
|||||||||||||||||||||||||| || ||| || ||||||| | |||||| | |||
Sbjct 543 GCTTTGTTCCAGAAGAGAAAGAGTTGAATTTGAGAAAATTGGAAAAG-GCTTTACA-AGA 600
Query 1716 AGGATTTGAGGTGAAGGTAAAGGTTGATGAGAAAACTTGTCAAAAATGTACATCCTCTGG 1775
||| ||||| |||||||| ||| ||||||||||| |||||||||||||| ||||||||||
Sbjct 601 AGGGTTTGAAGTGAAGGTGAAGATTGATGAGAAAGCTTGTCAAAAATGTTCATCCTCTGG 660
Query 1776 TGGAACCTGCGGCTTCCAAAATTCAACACAGATTTGCTGCAAGGAAGCCTCATCATTAGG 1835
||||| |||||||||| |||||||||||||||||||||||||| |||||||||||| |||
Sbjct 661 TGGAATCTGCGGCTTCGAAAATTCAACACAGATTTGCTGCAAGCAAGCCTCATCATCAGG 720
Query 1836 ATGCAATAAAGTCCATCCACTACCTGATG 1864
|||||||||| |||||||||||| |||||
Sbjct 721 ATGCAATAAACTCCATCCACTACTTGATG 749
Score = 784 bits (424), Expect = 0.0
Identities = 493/526 (94%), Gaps = 6/526 (1%)
Strand=Plus/Plus
Query 3376 GCACCACAAGGCACACCAGGCTACGTGGATCCAGAGTATTACCAATGTTACCA-ATTAAA 3434
|||||||||||||||||||||||||| ||||||||||||||||||||||| || |||||
Sbjct 1775 GCACCACAAGGCACACCAGGCTACGTAGATCCAGAGTATTACCAATGTTA-CAGTTTAAA 1833
Query 3435 CGAGAAGAGCGATGTCTACAGCTTCGGAGTCGTACTAACG-GAACTAATCTCATCAAAAG 3493
|||||| || || ||||| ||||||||||||||||||| | |||||||||||||||||||
Sbjct 1834 CGAGAAAAGTGACGTCTATAGCTTCGGAGTCGTACTAA-GCGAACTAATCTCATCAAAAG 1892
Query 3494 AAGCAGTAGACATTACTCGACACCGTCACGATATCAATCTAGCGAACATGGCTGTATCTA 3553
||||||||||||| ||||| ||||||||||||||||| |||||||||||||||||||| |
Sbjct 1893 AAGCAGTAGACATCACTCGTCACCGTCACGATATCAACCTAGCGAACATGGCTGTATCCA 1952
Query 3554 AGATTCAGAACAATGCATTACACGAGCTTGTGGATTCGAGTTTAGGATACGATAATGATC 3613
| || |||||||| ||||||||||||||||| |||||||||||||||| |||| ||||||
Sbjct 1953 AAATCCAGAACAACGCATTACACGAGCTTGTAGATTCGAGTTTAGGATTCGATGATGATC 2012
Query 3614 CTGAAGTTAGGAGGAAGATGATGGCGGTGGCGGAATTAGCGTTTCGATGTTTGCAACAAG 3673
| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 2013 CAGAAGTTAGGAGGAAGATGATATCGGTGGCGGAATTAGCGTTTCGATGTTTGCAACAAG 2072
Query 3674 AGAGAGATGTTAGACCGGCGATGGATGAGATTGTGGAGATTTTGAGAG-GGATTAAGGAT 3732
||||||| |||||||| |||||||||||||||||||||||||||||| || |||||||
Sbjct 2073 AGAGAGAAGTTAGACCTTCGATGGATGAGATTGTGGAGATTTTGAGAGAGG-TTAAGGAG 2131
Query 3733 GATGAGAAGAAGCGTGTGTTGGTGAAGTCGCCGGATGTTGTGGATATTGAATGCGGTGGT 3792
|| ||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 2132 GAAGAGGAGAAGCGTGTGTTGGTGAAGTCGCCGGATGTTGTGGATATTGAATGTGGTGGT 2191
Query 3793 GGTGATGATGTTGGATTGTTGAGGAATAGTGTTCCGCCGCCGATTTCGCCGGAGACTGAT 3852
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2192 GGTGATGATGTTGGATTGTTGAGGAATAGTGTTCCGCCGCCGATTTCGCCGGAGACTGAT 2251
Query 3853 AAGTGGACTAGTAGTTCTGATACGGCGGCGAGTTTGTAATTAGGGT 3898
|||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 2252 AAGTGGACGAGTAGTTCTGATACGGCGGCGAGTTTGTAATTAGGGT 2297
> Ahg338919 jgi|Araly1|338919|fgenesh1_pg.C_scaffold_2001018
Length=1362
Score = 743 bits (402), Expect = 0.0
Identities = 543/608 (89%), Gaps = 21/608 (3%)
Strand=Plus/Plus
Query 74 AGTGTGGGAATATCACCGCTGGTTTCCCCTTCTGGGGAGGGAATCGTCTAAAACATTGCG 133
||||||| |||||||||||||||||||||||||||||||| || |||| |||||| ||||
Sbjct 110 AGTGTGGAAATATCACCGCTGGTTTCCCCTTCTGGGGAGGAAAGCGTCGAAAACAGTGCG 169
Query 134 GTCTTCCATCGCTGGAGCTTCACTGCAGCAAAAACATCACCTCTTTATTCATCTCAAGTC 193
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 170 GTGTTCCATCGCTGGAGCTTCACTGCAGCAAAAACATCACCTCTTTATTCATCTCAAGTC 229
Query 194 AAGAGTTCTATGTTTTACATCTAAATCAAACGTCTAAA-ACACTTAAACTTGCTAGAACA 252
||||||||||||||||||||||||||||||| || ||| ||||||| |||| | |||||
Sbjct 230 AAGAGTTCTATGTTTTACATCTAAATCAAACATC-AAACACACTTACACTTTCCAGAACC 288
Query 253 GACCTTTTAGGTTCAATTTGCAACTCTACTTTCACTACCATAACCTTGCCTCCA-AATAT 311
|||||||||||||| |||||| ||||||| |||||||| | ||||||||||| | || ||
Sbjct 289 GACCTTTTAGGTTCCATTTGCGACTCTACGTTCACTACAACAACCTTGCCTCAAGAA-AT 347
Query 312 TTTCGAGCTTTCTCCAACTTACAAGAGGCTCACCGTTTTCTACTACTGCTTC--TTATTG 369
||| |||||||| |||||||||||||| ||||||||||| |||||||||||| |||
Sbjct 348 TTTTGAGCTTTCGCCAACTTACAAGAGCCTCACCGTTTTTTACTACTGCTTCCCTTAC-- 405
Query 370 ACTCATTACGTTTCG-AGTTATAAATGTCCTATGAGAGGTTTTATCTTTGTGTCTGAAAA 428
||||||||| ||||| ||| ||| ||||||||||||||||| ||| ||| ||||| ||||
Sbjct 406 ACTCATTACCTTTCGGAGT-ATATATGTCCTATGAGAGGTTCTATATTTATGTCTCAAAA 464
Query 429 CCATGA--A-TATCATAAAATCTGCGGTGACACTTTCACCGTG-ATTGTTCCTAC-ACGT 483
|| ||| | ||||||| |||||||||||||||||||||||| || ||||||| | ||
Sbjct 465 CCCTGATCAGTATCATACCATCTGCGGTGACACTTTCACCGTGTAT-GTTCCTATGA-GT 522
Query 484 TTTGGTGCAGGAGAGAAAGAGTTGAATATGACCAATTTGGAAAGTGTTTTAAGTAAAGGA 543
|||| |||| ||| |||||||| |||||||||||||||||||||||||||||||||||
Sbjct 523 TTTGTTGCA--AGA-AAAGAGTTCAATATGACCAATTTGGAAAGTGTTTTAAGTAAAGGT 579
Query 544 TTTGAAGTAAAAGTGAAGATCGATGATACATCATGTCAAGAATGTTTATCCTCTCATGGA 603
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 580 TTTGAAGTAAAAGTGAAGATCGATGATATATCATGTCAAGAATGTTTATCCTCTCATGGA 639
Query 604 AGTTGTGGCTTTAATGAAACCTTGCCAGTGGGAGGTAAATGCAGTCCACTCAATCCAACA 663
||||||||||| || |||||||||||| | |||| ||||||||||||| |||||||| ||
Sbjct 640 AGTTGTGGCTTCAACGAAACCTTGCCATTAGGAGCTAAATGCAGTCCATTCAATCCACCA 699
Query 664 ACAC-AAC 670
||| |||
Sbjct 700 CCACCAAC 707
Score = 470 bits (254), Expect = 4e-131
Identities = 481/585 (82%), Gaps = 37/585 (6%)
Strand=Plus/Plus
Query 685 GGGGATCGTCACAAACATTGCGGTCATCCATTGCTAGAGCTTCGCTGCGACCAAAACAAG 744
||| |||||||||||||||||||||||||||||||||||||||||||| ||||| ||||
Sbjct 772 GGGAATCGTCACAAACATTGCGGTCATCCATTGCTAGAGCTTCGCTGCAACCAATACAAC 831
Query 745 AGTACCTCTTTATTCATCTCAGACCAAGAGTTCTTTGTTCTCCATGTCGATCAAACATCT 804
||||||||||||||||||||||||||||||| || |||||| |||| ||||||||||||
Sbjct 832 AGTACCTCTTTATTCATCTCAGACCAAGAGTACTATGTTCTTAATGTAGATCAAACATCT 891
Query 805 TACAGTCTTACACTCGCCAGACCAGACCTTTTACATTCCTTTTGCTCCCTTACATTCACC 864
|||| ||||||||| |||||| ||||||||| ||| |||||||||| |||||||||||
Sbjct 892 TACAATCTTACACTTGCCAGA---GACCTTTTAGATTTCTTTTGCTCCTTTACATTCACC 948
Query 865 AACACAACCTTACCACCAGAAATTTTCGA-ACTTTC-TCCGGCCTACAAGAGCGTCACAT 922
||||||||||||||| ||||||||||||| | |||| || ||||||||||||||||||
Sbjct 949 AACACAACCTTACCATCAGAAATTTTCGAGA-TTTCGTCAA-CCTACAAGAGCGTCACAT 1006
Query 923 TCTACCACTGTTAC---CCGGT-TCTTCCTGACCTTTCGAATTATACATGTCCTGTTATA 978
|||||||| || | || | ||||||| ||||||| || ||||||||||||| |||
Sbjct 1007 TCTACCACCATTGCGAACCT-TATCTTCCTTACCTTTCTAAATATACATGTCCTGGGATA 1065
Query 979 GG---TCCAATCTCAGTGTCTGGAAACCCTGAAGATCACGAAAC-CTGCTTTCCCAATTT 1034
|| ||| ||| |||| || |||||||||||| |||| || |||| || ||| |||
Sbjct 1066 GGACCTCCGATCACAGTTTCGGGAAACCCTGAATATCAT-AAGTTCTGCCTTGCCAGTTT 1124
Query 1035 TGCCGCAAACGTTCCCACGAG-TTTCGT-C-ACGAAAGAGAAAAAATTGAATAT-AGCCA 1090
|| | |||||||| | ||| ||| || | | ||| |||||| | |||||||| ||| |
Sbjct 1125 CACCACGAACGTTCCAAAGAGCTTT-GTTCTA-GAA-GAGAAAGAGTTGAATATGAGC-A 1180
Query 1091 ATTTGGAAAGTGTTTTG-GAAAAGGGCTTTGAGGTGAACATGAATG-TC-ATCATGAAAG 1147
|||||||||| ||||| ||||||| ||||||||||| |||| | || || | |||||
Sbjct 1181 ATTTGGAAAGAGTTTTAAGAAAAGGA-TTTGAGGTGAAGGTGAA-GATCGATGA-GAAAG 1237
Query 1148 CTTGTCAAGCATGTTCATACTCTAATGAATC-CTGTGGCTTCGAT-GAAAACTTTCCATT 1205
| ||||||| ||||| | |||| ||||| | |||||||||| | |||| |||||||||
Sbjct 1238 CATGTCAAGAATGTTTGTCCTCTCATGAA-CACTGTGGCTTC-ACCGAAACCTTTCCATT 1295
Query 1206 CGAAGTCAAATGCAAACCACACCATTC-ACCAACTGCTAAGTTTC 1249
||||| ||||||| |||| |||| | || || || ||||||||
Sbjct 1296 TGAAGTTAAATGCATTCCACCCCAT-CGACAAAATGGTAAGTTTC 1339
Score = 335 bits (181), Expect = 2e-90
Identities = 469/602 (78%), Gaps = 43/602 (7%)
Strand=Plus/Plus
Query 74 AGTGTGGGAATATCACCGCTGGTTTCCCCTTCTGGGGAGGGAATCGTCTA-AAACATTGC 132
|||||||||| |||||||| |||||||||||||||||||||||||||| | |||||||||
Sbjct 734 AGTGTGGGAACATCACCGCGGGTTTCCCCTTCTGGGGAGGGAATCGTC-ACAAACATTGC 792
Query 133 GGTCTTCCATCGCTGGAGCTTCACTGCAGC-AA-A-AACA-TCACCTCTTTATTCATCTC 188
|||| ||||| ||| ||||||| ||||| | || | |||| | |||||||||||||||||
Sbjct 793 GGTCATCCATTGCTAGAGCTTCGCTGCAACCAATACAACAGT-ACCTCTTTATTCATCTC 851
Query 189 AAGTC-AAGAGTTCTATGTT-TTACATCTAAATCAAACGTCTAA-AACACTTAAACTTGC 245
| | | |||||| ||||||| ||| || || ||||||| ||| | || |||| ||||||
Sbjct 852 A-GACCAAGAGTACTATGTTCTTA-ATGTAGATCAAACATCTTACAAT-CTTACACTTGC 908
Query 246 TAGAACAGACCTTTTAGGTT-CAATTTGCAACTCTACTTTCACTACCATAACCTTGCC-T 303
||| |||||||||| || | ||||| || ||| ||||| | || |||||| || |
Sbjct 909 CAGA---GACCTTTTAGATTTCT-TTTGCTCCTTTACATTCACCAACACAACCTTACCAT 964
Query 304 CCA-AATATTTTCGAGCTTTC-TCCAACTTACAAGAG-GCTCACCGTTTT-CTACTACTG 359
| | || ||||||||| |||| || ||| |||||||| | |||| || | | || | ||
Sbjct 965 C-AGAA-ATTTTCGAGATTTCGTC-AACCTACAAGAGCG-TCACA-TTCTACCACCATTG 1019
Query 360 CTT-C-TTAT-TGACTCATTACGTTTCGAGTTATAAATGTCCTATGAGAGGTTTT---AT 413
| | |||| | | | |||| |||| | |||| ||||||| || ||| | ||
Sbjct 1020 CGAACCTTATCTT-C-C-TTACCTTTCTAAATATACATGTCCTGGGATAGGACCTCCGAT 1076
Query 414 CTTTGTGTCTGAAAACCATGAATATCATAAAATCTGCGGTGACACTTTCACCGTGATTGT 473
| || || | ||||| |||||||||||| ||||| || || ||||||| || ||
Sbjct 1077 CACAGTTTCGGGAAACCCTGAATATCATAAGTTCTGCCTTGCCAGTTTCACCACGAACGT 1136
Query 474 TCCTAC-ACGTTTTGGTGC-AGGAGAGAAAGAGTTGAATATGACCAATTTGGAAAGTGTT 531
||| | | | |||| | | || |||||||||||||||||||| |||||||||||| |||
Sbjct 1137 TCCAAAGA-GCTTTGTT-CTAGAAGAGAAAGAGTTGAATATGAGCAATTTGGAAAGAGTT 1194
Query 532 TTAAGTAAAGGATTTGAAGTAAAAGTGAAGATCGATGATACATCATGTCAAGAATGTTTA 591
||||| ||||||||||| || || |||||||||||||| | | ||||||||||||||||
Sbjct 1195 TTAAGAAAAGGATTTGAGGTGAAGGTGAAGATCGATGAGAAAGCATGTCAAGAATGTTTG 1254
Query 592 TCCTCTCATGGA-AGTTGTGGCTTTAATGAAACCTTGCCAGTGGGAGGTAAATGCAGTCC 650
|||||||||| | | | ||||||| | |||||||| ||| | | || |||||||| |||
Sbjct 1255 TCCTCTCATGAACACT-GTGGCTTCACCGAAACCTTTCCATTTGAAGTTAAATGCATTCC 1313
Query 651 AC 652
||
Sbjct 1314 AC 1315
> Ahg908230 jgi|Araly1|908230|Al_scaffold_0002_1311
Length=795
Score = 542 bits (293), Expect = 9e-153
Identities = 519/626 (83%), Gaps = 23/626 (4%)
Strand=Plus/Plus
Query 1240 GCTAAGTTTCAGTGTGGGAACATCACCGCTGGTTTCCCTTTCTCCGGTGGGAATCGTCCT 1299
||| |||||||||| |||||||||||||| |||||||| |||| || ||||| ||| |
Sbjct 103 GCTCAGTTTCAGTGCGGGAACATCACCGCCGGTTTCCCCTTCTGGGGAGGGAAACGT-CA 161
Query 1300 CAAA-TTTGCGGTCATCCATCGTTGGAGCTTCACTGCTATAACAACATGGCCT-CTATAA 1357
|||| |||||| ||||||| | |||| |||| |||| ||||||||| ||| || |||
Sbjct 162 CAAAGATTGCGGCCATCCATTGCTGGAACTTCGCTGCCCTAACAACATCACCTCCT-TAA 220
Query 1358 TCATCTCAGACCACT-TTTACAATGTTCTCCATATAGATCAAACATCTAACACTCTTAGA 1416
||||||| |||| | | ||| |||||||||||||||||||||| ||||| ||||||| |
Sbjct 221 CCATCTCAAACCA-TCTGTACCATGTTCTCCATATAGATCAAACGTCTAAGACTCTTAAA 279
Query 1417 CTTGCTAGAGCAGAGCTGGAAGGTTCTTTTTGCAACGCTAC-TTACACAGCCACAACCTT 1475
||| | || ||||| | ||||||| ||||||||| |||| || ||||| |||||||||
Sbjct 280 CTTTCCAGTTCAGAGTTACAAGGTTCATTTTGCAACTCTACATT-CACAGGCACAACCTT 338
Query 1476 GCCTTCCAAAATCTTTGAGATTTCATCAACCTACAAGAGCCTCACTGTTTTCTACCTCTG 1535
|||| || ||||||||||| ||||| | |||| ||||| |||||||||||||||||||||
Sbjct 339 GCCTCCCCAAATCTTTGAGCTTTCACCGACCTTCAAGAACCTCACTGTTTTCTACCTCTG 398
Query 1536 CGACCCTAAG-GTTTCTTACCGTTCGAGTTATACATGTCCTGGTAGAGG-CCTTGTCTCA 1593
|||||||||| ||| |||||| ||| |||||||||||||||||| | || ||| |||||
Sbjct 399 CGACCCTAAGCGTT-CTTACCATTCAAGTTATACATGTCCTGGTTGGGGTCCTA-TCTCA 456
Query 1594 GTGTCTCAAAATTCT-GATTACCATAACTCCTGCCAAGACAGTTTCACGATTAACGTTCC 1652
|| ||| |||| || ||||| ||||| ||||||| |||||||||||||||||||||||
Sbjct 457 GTTTCTGAAAAC-CTTGATTATCATAAGTCCTGCCTTGACAGTTTCACGATTAACGTTCC 515
Query 1653 AAAGAGCTTTGTTCCAGAAGAGAAAGAGTTGGATGTGAC-CAATTTGGAAAGTGCTTTAA 1711
||||||||||||||||||||||||||||| || | || || | | |||||||||||||
Sbjct 516 TAAGAGCTTTGTTCCAGAAGAGAAAGAGTTAAATTTAACACA-TATAGAAAGTGCTTTAA 574
Query 1712 GAGAAGGATTTGAGGTGAAGGTAAAGGTTGATGAGAAAACTTGTCAAAAATGTACATCCT 1771
||||||| |||||||| ||| | ||| |||| |||||| | |||||| | ||| |||| |
Sbjct 575 GAGAAGGGTTTGAGGTAAAGATGAAGATTGAGGAGAAAGCGTGTCAAGACTGTTCATC-T 633
Query 1772 CTGGTGGAACCTGCGGCTTCCAA-AATTCAACACAGATTTGCTGCAAGGAAGCCTCATCA 1830
| || || |||||||||| || ||| | |||||| |||||||||| ||||||||||||
Sbjct 634 CA--TGAAATCTGCGGCTTC-AACAATACCACACAGGTTTGCTGCAAAGAAGCCTCATCA 690
Query 1831 TTAGGATGCAA-TAAAGTCCATCCAC 1855
| || |||||| | | |||||||||
Sbjct 691 TCAGCATGCAACTCAC-TCCATCCAC 715
> Ahg908232 jgi|Araly1|908232|Al_scaffold_0002_1313
Length=879
Score = 340 bits (184), Expect = 4e-92
Identities = 236/260 (91%), Gaps = 8/260 (3%)
Strand=Plus/Plus
Query 1244 AGTTTCAGTGTGGGAACATCACCGCTGGTTTCCCTTTCTCCGGTGGGAATCGTCCTCAAA 1303
||||||||||||| |||||||||||||||||||| ||||||||||||| |||||| ||||
Sbjct 113 AGTTTCAGTGTGGAAACATCACCGCTGGTTTCCCCTTCTCCGGTGGGATTCGTCCCCAAA 172
Query 1304 TTTGCGGTCATCCATCGTTGGAGCTTCACTGCTATAACAA-CATGGCCTCTATAATCATC 1362
||||||||||||||||| | ||||||||||||| |||||| ||| ||||||||||||||
Sbjct 173 TTTGCGGTCATCCATCGCTAGAGCTTCACTGCTTTAACAACCAT-ACCTCTATAATCATC 231
Query 1363 TCAGACCACT-TTTACAATGTTCTCCATATAGATCAAACATCTAACACTCTTAGACTTGC 1421
|||||||| | |||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 232 TCAGACCA-TCTTTACAATGTTCTCCATATAGATCAAACATCTAACACTCTTAGACTCGC 290
Query 1422 TAGAGCAGAGCTGGAAGGTTC-TTTTTGCAACGCTAC-TTACACAGCCACAACCTTGCCT 1479
|||||||||||| ||||||| ||||| ||||||| | || ||||||||||||||| |||
Sbjct 291 TAGAGCAGAGCTTCAAGGTTCATTTTT-CAACGCTTCATT-CACAGCCACAACCTTACCT 348
Query 1480 TCCAAAATCTTTGAGATTTC 1499
| | ||||||||||| ||||
Sbjct 349 TACGAAATCTTTGAGCTTTC 368
Score = 311 bits (168), Expect = 3e-83
Identities = 266/313 (85%), Gaps = 7/313 (2%)
Strand=Plus/Plus
Query 1547 TTTCTTACCGTTCGAGTTATACATGTCCTGGTAGAGGCCTTGTCTCAGTGTCTCAAAATT 1606
||||||||||||| |||||||||||||||| ||| |||||||||||||||||||||||
Sbjct 365 TTTCTTACCGTTCAAGTTATACATGTCCTGATAGTGGCCTTGTCTCAGTGTCTCAAAA-C 423
Query 1607 C-TGATTACCATAACTCCTGCCAA-GACAGTTTCACGATTAACGTTCCAAAGAGCTTTGT 1664
| |||||| ||| | || || ||| | |||||||||||||||| ||||||||||||||
Sbjct 424 CTTGATTATCATGATTCATG-CAATGGTAGTTTCACGATTAACGCCCCAAAGAGCTTTGT 482
Query 1665 TCCAGAAGAGAAAGAGTTGGATGTGACCAATTTGGAAAGTGCTTTAAGAGAAGGATTTGA 1724
||||||||||||||||||| | ||| ||||||||||||||||||||||||||| |||||
Sbjct 483 TCCAGAAGAGAAAGAGTTGAACATGAGCAATTTGGAAAGTGCTTTAAGAGAAGGGTTTGA 542
Query 1725 GGTGAAGGTAAAGGTTGATGAGAAAACTTGTCAAAAATGTACATCCTCTGGTGGAACCTG 1784
||| ||||| ||| ||||||||| | |||||||||||| |||||||| |||| |||
Sbjct 543 GGTAAAGGTGAAGACCGATGAGAAAGCGTGTCAAAAATGTTCATCCTCTCAAGGAATCTG 602
Query 1785 CGGCTTCCAAAATTCAACACA-GATTTGCTGCAAGGAAGCCTCATCATTAGGATGCAATA 1843
|||||| ||||| | || || | |||||||||||||| ||||||||| || |||| |||
Sbjct 603 TGGCTTCGAAAATACCACCCAAG-TTTGCTGCAAGGAATCCTCATCATCAGTATGCGATA 661
Query 1844 AAGTCCAT-CCAC 1855
| ||||| ||||
Sbjct 662 CACTCCATGCCAC 674
> Ahg475786 jgi|Araly1|475786|fgenesh2_kg.2__916__AT1G66930.1
Length=1740
Score = 241 bits (130), Expect = 4e-62
Identities = 410/541 (76%), Gaps = 35/541 (6%)
Strand=Plus/Plus
Query 1672 GAGAAAGAGTTGGATGTGACCAATTTGGAAAGTGCTTTAAGAGAAGGATTTGAGGTGAAG 1731
|||||||||||| || ||||| |||||||||||||| ||||| |||| ||||||||||||
Sbjct 1 GAGAAAGAGTTGAATTTGACCCATTTGGAAAGTGCTCTAAGAAAAGGGTTTGAGGTGAAG 60
Query 1732 GTAAAGGTTGATGAGAAAACTTGTCAAAAATGTACATCCTCTGGTGGAACCTGCGGCTTC 1791
| | | | ||||||| | | |||||| ||||| | ||| || |||||| ||| || ||
Sbjct 61 CTGATGATCGATGAGATACCGTGTCAAGAATGTTCGTCCACTCGTGGAATCTGTGG-TTT 119
Query 1792 CAA-AATTCAACACAGATTTGCTGCAA-GGAAGCCTCATCAT-TAGGATGCAATAAAGTC 1848
||| | | | ||||||||||||||||| | || ||||| ||| | || || | | | |
Sbjct 120 CAACAGTACCACACAGATTTGCTGCAACGTAA-CCTCAACATCT-GG-TGGAGTTACTTG 176
Query 1849 CAT-CCACTACCTGATGCTACTG-AGCTTGAGCTTCACAGACGCTGCAATGGCAC-GTTT 1905
| | |||| || | | ||| || | || |||| | | |||||||| | | || ||||
Sbjct 177 CGTACCACAACATCAACCTAGTGCTGATT-TGCTTAAGAAACGCTGCAGT-GAACGGTTT 234
Query 1906 AGCTGCGGCGATCAGAGAGAACTCTTTTACCCTTTCTGGACATCTGGTAGAGAAGACTGT 1965
||||||||| ||||| |||| |||| |||||| ||||||| | |||| || ||| |||||
Sbjct 235 AGCTGCGGCAATCAGCGAGATCTCTATTACCCCTTCTGGATACCTGGCAGGGAATACTGT 294
Query 1966 GGCCACCCTGACTTCAAGCTCGACGACTGTAGCGGAAGATTCGCAGAGCTTAGCATTTCC 2025
||||||||||||||||||||||| |||||| || ||||||||||| ||| ||| ||
Sbjct 295 GGCCACCCTGACTTCAAGCTCGAT---TGTAGCAGAGGATTCGCAGAGATTAACATCGCC 351
Query 2026 TCTGTGAAATTTAGAATTC-TAGCG-TCG-GTTTATGGCTCTAATATCATAAGACTCGGC 2082
|| ||||| || | ||| | || | | | ||| |||| || ||||||||||| |
Sbjct 352 TCCGTGAAGTTCAAAAT-CATAAATAT-GAGCC-ATGACTCTTCTACCATAAGACTCG-C 407
Query 2083 A-GATCCGAATATATAGGCGATCTCT-GTCCCC-AAGATCCTAT-AAATGCA-CCATTCA 2137
| |||| || ||||| ||||||| || |||||| || | || || ||||| | ||| |||
Sbjct 408 AAGATCAGATTATATCGGCGATC-CTTGTCCCCCAA-ACCC-ATTAAATG-AGCCACTCA 463
Query 2138 GCGAAAGTGTCCTTCCATTT-GCTCCTAACACCGAGCTGCTGACTATTTT-TTACAACTG 2195
|||| ||||||| ||| | | || |||| ||||| || || ||| | |||| ||||
Sbjct 464 TTGAAAACGTCCTTCAATTCAG-TGCTGACACAGAGCTTCTAAC-ATTATATTACGACTG 521
Query 2196 C 2196
|
Sbjct 522 C 522
> Ahg475782 jgi|Araly1|475782|fgenesh2_kg.2__912__AT1G66860.1
Length=1448
Score = 135 bits (73), Expect = 2e-30
Identities = 80/83 (96%), Gaps = 1/83 (1%)
Strand=Plus/Plus
Query 1 ATGAAGAACATGAACTTTGAGCGACTCTCTGAGCTCATGGCTTTCTACCACTTGATGGGG 60
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1201 ATGAAGAACATGAACGTTGAGCGACTCTCTGAGCTCATGGCTTTCTACCACTTGATGGGG 1260
Query 61 AAGATCTCTAGTGAG-TGTGGGA 82
||||||||||||||| ||| |||
Sbjct 1261 AAGATCTCTAGTGAGGTGTTGGA 1283
> Ahg908243 jgi|Araly1|908243|Al_scaffold_0002_1324
Length=1116
Score = 130 bits (70), Expect = 9e-29
Identities = 230/304 (76%), Gaps = 24/304 (8%)
Strand=Plus/Plus
Query 2255 GTGATGA-TGATAGAAGTTACTATGTGACGAGAAACCTCTCGTTTCCTCCACTCAGTGA- 2312
||||||| || ||||||||||||||||||||||||||||| | |||| ||| | |
Sbjct 749 GTGATGAGGGA-AGAAGTTACTATGTGACGAGAAACCTCTCCTCTCCTTTACTT-GACAC 806
Query 2313 GAT-TA-ATGACCTTTTATACGACTTCAGTCAA-TCTTGCGATAGAAACGTCAGTATTCC 2369
| | || | | |||| || || |||| || || | | || | |||||||||||| ||||
Sbjct 807 G-TCTAGAGG-CCTTCTAAACAACTTTAGGGAAATGT-GCAAAAGAAACGTCAGTGTTCC 863
Query 2370 CGCATCTGGATCGA-CGCTTA-AC-ATACTGCAGAGCACTCCGAGTA-ACGATAATCTAA 2425
|| |||||| | | || ||| || || ||||||| | ||| | | | |||||||| |
Sbjct 864 TGCGTCTGGA-CAAGCG-TTATACGAT-CTGCAGAAAAGTCCAAATCCA-GATAATCTGA 919
Query 2426 AGAAGGCTCTCGAATACGGTTTCGA-GCTTGAACTTAAC-CAAGATTGTCGGACGTGCAT 2483
||| |||||| ||| | ||||| | ||||||| ||||| || ||||| || | |||| |
Sbjct 920 AGATGGCTCTTGAACAAGGTTTT-ACGCTTGAAGTTAACTCA-GATTGCCGAAGGTGCCT 977
Query 2484 AGACTCTAAGGGTGCTTGTGGATATAGTCAAACCTCAAGT-AGATTCGTCTGCTATTCTA 2542
| ||||| | | | |||||||||||| ||| || |||||| || ||||| ||||||| ||
Sbjct 978 ACACTCTTACGATACTTGTGGATATAATCAGACTTCAAGTGAG-TTCGTGTGCTATTGTA 1036
Query 2543 TAGA 2546
|||
Sbjct 1037 AAGA 1040
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 153638422201
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5