BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G66890.1
Length=557
Score E
Sequences producing significant alignments: (Bits) Value
Ahg475783 jgi|Araly1|475783|fgenesh2_kg.2__913__AT1G66890.1 680 0.0
> Ahg475783 jgi|Araly1|475783|fgenesh2_kg.2__913__AT1G66890.1
Length=481
Score = 680 bits (368), Expect = 0.0
Identities = 448/485 (92%), Gaps = 11/485 (2%)
Strand=Plus/Plus
Query 56 AATGTCTCTGCAAAAGTTTAAGCTTCTCGCAACTCATTGCAGCACCGTCGCAGAGAGTCC 115
||||||||||||||| || ||||||||||| |||||||||||||||||||| ||||||||
Sbjct 1 AATGTCTCTGCAAAAATTCAAGCTTCTCGCTACTCATTGCAGCACCGTCGCGGAGAGTCC 60
Query 116 GACACGTAGTCCAGTCATCCACCTCCGCCGTCGTAAAACGCTGCGTTTGTTACTCACTCG 175
|| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 61 AACGCGTAGTCCAGTCATCCACCTCCGCCGTCGTAAAACGCTGCGTTTGTTACTTACTCG 120
Query 176 ATCATCAGACCGATGGAGATTACCGGAGATCCA-AAACAACGTAGATGAATCGAAGAAAA 234
||||||||| |||||||||||||| ||||| || ||| |||||||||||||||||||||
Sbjct 121 ATCATCAGATCGATGGAGATTACCTGAGATTCAGAAA-AACGTAGATGAATCGAAGAAAT 179
Query 235 CGGATAAGAGAGGTAAGATCCGATCTAGCCGGAAGCTTGGAGATCTTTTTGTTTCGTCGC 294
|||||||||||| ||||||||||||| | ||||||||| |||| ||||||||||||||||
Sbjct 180 CGGATAAGAGAGATAAGATCCGATCTCGTCGGAAGCTTAGAGAGCTTTTTGTTTCGTCGC 239
Query 295 CACCGTTTGAGGAAAGTGGCGGTGGCGGCGGCGGAGATAAGGGGACGAAGATGGAGGTGG 354
|||||||||||||||||||||| |||||||||| ||| | || || ||||||||||||||
Sbjct 240 CACCGTTTGAGGAAAGTGGCGGCGGCGGCGGCG-AGA-A-GGCGATGAAGATGGAGGTGG 296
Query 355 AG----A--TGGAGAGGGATGTACCGGTTAACGGCGTTAGTAATAACGCAGGTTTTGGAG 408
|| | |||||||||||||||||||||||||||||| |||||||| ||||||||| |
Sbjct 297 AGGTGGAGATGGAGAGGGATGTACCGGTTAACGGCGTTAATAATAACGGAGGTTTTGGTG 356
Query 409 AAGAGATAACGGCTCGGCGTGTGGGCTTTAACGGGTCTGTTAGGCCCATGTCATCTGTTA 468
||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||
Sbjct 357 AAGAGATAACGGCTCGGCGTGTGGGCTTTAATGGGTCTGTTAGGCCCATGTCGTCTGTTA 416
Query 469 CACTTCGATGTAGATTACTTAGACGATCTTGGCGTCCTGTACTTGTAACTATTCCTGAAC 528
||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 417 CACTTCGATGTAGGTTACTTCGACGATCTTGGCGTCCTGTACTTGTAACTATTCCTGAAC 476
Query 529 AATAA 533
|||||
Sbjct 477 AATAA 481
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 20336928937
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5