BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G66900.1
Length=1398
Score E
Sequences producing significant alignments: (Bits) Value
Ahg925912 jgi|Araly1|925912|scaffold_201473.1 1387 0.0
Ahg494156 jgi|Araly1|494156|fgenesh2_kg.7__3589__AT5G38220.3 736 0.0
> Ahg925912 jgi|Araly1|925912|scaffold_201473.1
Length=873
Score = 1387 bits (751), Expect = 0.0
Identities = 835/876 (95%), Gaps = 3/876 (0%)
Strand=Plus/Plus
Query 196 TTTATGAATTAGAATTCATCATCATGGGAGGTGTTACATCATCGATCGCTGCTAAATTTG 255
|||||||||||||| | |||||||||||||||| ||||||||||||||||| ||||| |
Sbjct 1 TTTATGAATTAGAA-T--TCATCATGGGAGGTGTAACATCATCGATCGCTGCAAAATTCG 57
Query 256 CTTTCTTTCCACCAACGCCACCGTCGTATGAGGTTATAGCCGACGATAGCTGCGGTGGAC 315
|||||||||||||||| |||||||| || |||||||||||||||||||||||||| ||||
Sbjct 58 CTTTCTTTCCACCAACTCCACCGTCTTACGAGGTTATAGCCGACGATAGCTGCGGCGGAC 117
Query 316 GTTTATACATACCGGAGATTCCTCGCCGTGATGATGTTGATATATTGAAGCTTCGTACTC 375
||||||||||||||||||||||||| ||||||||||||||||| || ||||| |||||||
Sbjct 118 GTTTATACATACCGGAGATTCCTCGTCGTGATGATGTTGATATCTTAAAGCTACGTACTC 177
Query 376 GTTGTGGTAATGAGATCGTTGCTGTTTATGTGAAACATTCAAAAGCTAATGGCACGCTTT 435
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 178 GTTGTGGTAATGAGATCGTAGCTGTTTATGTGAAACATTCAAAAGCTAATGGCACGCTTT 237
Query 436 TGTATTCTCATGGTAACGCTGCTGATTTGGGTCAAATGTTTGAGCTTTTCGTTGAGCTTA 495
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 238 TGTATTCTCATGGTAACGCTGCTGATTTGGGTCAAATGTTTGAGCTTTTCGTTGAGCTTA 297
Query 496 GCAATCGCCTTCGCGTCAATCTTATGGGGTATGATTACTCTGGTTATGGTCAGTCTACTG 555
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 298 GCAATCGCCTTCGCGTCAATCTTATGGGGTATGATTACTCTGGTTATGGTCAGTCTACTG 357
Query 556 GACAGGCTAGCGAGTGTAATACATATGCTGATATAGAGGCATCATATAAATGCCTCAAGG 615
||||||| |||||||||||||||||||||||||||||||| || ||||| ||||| ||||
Sbjct 358 GACAGGCAAGCGAGTGTAATACATATGCTGATATAGAGGCGTCGTATAAGTGCCTTAAGG 417
Query 616 AAAAGTACGGTGTAAAAGACGATCAACTGATAGTATATGGTCAATCTGTTGGTAGTGGAC 675
||||||| |||||||||||||||||||||||| |||||||||||||||| ||||||||||
Sbjct 418 AAAAGTATGGTGTAAAAGACGATCAACTGATACTATATGGTCAATCTGTCGGTAGTGGAC 477
Query 676 CTACGGTTGATCTAGCTTCACGCACACCTAACTTAAGAGGCGTGGTTTTACAGTGTCCTA 735
||||||||||||||||||| |||||||||||||| ||||||||||||||||||| || |
Sbjct 478 CTACGGTTGATCTAGCTTCGCGCACACCTAACTTGCGAGGCGTGGTTTTACAGTGCCCGA 537
Query 736 TCCTGTCTGGGATGAGGGTTTTGTATCCTGTGAAATGTACATATTGGTTTGACATTTACA 795
| |||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||
Sbjct 538 TTCTGTCTGGGATGAGGGTTTTGTATCCGGTGAAATGTACATATTGGTTTGATATTTACA 597
Query 796 AGAATATTGACAAGATCGGCTCAGTTACCTGTCCTGTATTAGTAATCCATGGTACTGCGG 855
||||||||||||| |||||| ||||||||||||||||||||||||||||||| |||||||
Sbjct 598 AGAATATTGACAAAATCGGCGCAGTTACCTGTCCTGTATTAGTAATCCATGGAACTGCGG 657
Query 856 ATGAAGTAGTTGATTGGTCTCACGGAAAACGGCTCTGGGAACTCAGCAAAGAGAAGTATG 915
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 658 ATGAAGTAGTTGATTGGTCTCACGGAAAACGGCTCTGGGAACTCAGCAAAGAGAAGTATG 717
Query 916 AACCTTTGTGGATAAGTGGAGGTGGACACTGTGACCTTGAACTCTATCCAGATTTCATCA 975
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 718 AACCTTTGTGGATAAGTGGAGGTGGACACTGCGACCTTGAACTCTATCCAGATTTCATCA 777
Query 976 GACATCTGAAGAAATTTGTTGTATCACTTGGCAACAAACAAGCAGAGCAAGCTCCCACAT 1035
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 778 GACATCTGAAGAAATTTGTTGTATCACTTGGCAACAAACAAGCAGAGCAAGCTGCCACAG 837
Query 1036 AGCGAGATAGCTGATATGTTTGAAATGGGTTATTTT 1071
||||| ||||||||||||||||||| | |||| |||
Sbjct 838 AGCGAAATAGCTGATATGTTTGAAACGAGTTACTTT 873
> Ahg494156 jgi|Araly1|494156|fgenesh2_kg.7__3589__AT5G38220.3
Length=1322
Score = 736 bits (398), Expect = 0.0
Identities = 663/789 (84%), Gaps = 25/789 (3%)
Strand=Plus/Plus
Query 211 TCATCATCATGGGAGGTGTTACATCATCGATCGCTGCTAAATTTGCTTTCTTT-CCACCA 269
||||| |||||||||| || || ||||| ||||| || ||||| ||||| ||| || |||
Sbjct 165 TCATCGTCATGGGAGGAGTAACTTCATCAATCGCAGCAAAATTCGCTTT-TTTCCCGCCA 223
Query 270 ACGCCACCGTCGTA-TGAGGTTATAGCCGACGATAGCTGCGGTGGA-CGTTTATACAT-A 326
| |||||||| || || || | ||||| | | | || || ||||| || |
Sbjct 224 TCACCACCGTCTTACGGA-TTTGTTTCCGAC----G-T----T-GACCGATTATATATAA 272
Query 327 CCGGAGATTCCTCGCCGTGATGATGTTGATATATTGAAGCT-TCGTACTCGTTGTGGTAA 385
| | || | ||||||||||||||||||||| |||||||||| | |||||| |||||||
Sbjct 273 CAGAAG-TACCTCGCCGTGATGATGTTGATGTATTGAAGCTAAAG-ACTCGTCGTGGTAA 330
Query 386 TGAGATCGTTGCTGTTTATGTGAAACATTCAAAAGCTAATGGCACGCTTTTGTATTCTCA 445
||||| || ||| ||||| | || ||| | ||||||||||| ||||||||||| || ||
Sbjct 331 CGAGATTGTAGCTATTTATATTAAGCATCCTAAAGCTAATGGTACGCTTTTGTACTCACA 390
Query 446 TGGTAACGCTGCTGATTTGGGTCAAATGTTTGAGCTTTTCGTTGAGCTTAGCAATCGCCT 505
||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||| ||
Sbjct 391 TGGTAACGCTGCTGATTTGGGTCAAATGTTTGAGCTTTTCGTTGAACTTAGTAATCGTCT 450
Query 506 TCG-CGTCAATCTTATGGGGTATGATTACTCTGGTTATGGTCAGTCTACTGGACAGGCTA 564
|| | | ||||| ||||||||||||||||||||||||||||||||||| ||| |||| |
Sbjct 451 CCGACTT-AATCTCATGGGGTATGATTACTCTGGTTATGGTCAGTCTACGGGAAAGGCAA 509
Query 565 GCGAGTGTAATACATATGCTGATATAGAGGCATCATATAAATGCCTCAAGGAAAAGTACG 624
| || ||||||||||||||||||||||| |||||||||| |||||||||||| | || |
Sbjct 510 GTGAATGTAATACATATGCTGATATAGATGCATCATATACCTGCCTCAAGGAACATTATG 569
Query 625 GTGTAAAAGACGATCAACTGATAGTATATGGTCAATCTGTTGGTAGTGGACCTACGGTTG 684
|||| ||||| |||||||||||| |||||||||| ||||||||||||||||| ||| |||
Sbjct 570 GTGTTAAAGATGATCAACTGATATTATATGGTCAGTCTGTTGGTAGTGGACCAACGATTG 629
Query 685 ATCTAGCTTCACGCACACCTAACTTAAGAGGCGTGGTTTTACAGTGTCCTATCCTGTCTG 744
|||||||||| ||||| ||||| |||||||| |||||||| || | ||||| |||||||
Sbjct 630 ATCTAGCTTCGCGCACGCCTAATTTAAGAGGGGTGGTTTTGCACAGCCCTATTCTGTCTG 689
Query 745 GGATGAGGGTTTTGTATCCTGTGAAATGTACATATTGGTTTGACATTTACAAGAATATTG 804
|||| || ||||||||||| || ||| ||||||||||||||||||||||||||||||| |
Sbjct 690 GGATTAGAGTTTTGTATCCGGTTAAACGTACATATTGGTTTGACATTTACAAGAATATCG 749
Query 805 ACAAGATCGGCT-CAGTTACCTGTCCTGTATTAGTAATCCATGGTACTGCGGATGAAGTA 863
| |||||||| | |||| || |||||||| |||||||||||||| ||||| ||||||||
Sbjct 750 ATAAGATCGG-TGCAGTGACATGTCCTGTCTTAGTAATCCATGGGACTGCAGATGAAGTG 808
Query 864 GTTGATTGGTCTCACGGAAAACGGCTCTGGGAACTCAGCAAA-GAGAAGTATGAACCTTT 922
|||||||| ||||| ||||||| ||| |||||||| |||| |||||||||||||||||
Sbjct 809 GTTGATTGTTCTCATGGAAAACAGCTTTGGGAACTTT-CAAAAGAGAAGTATGAACCTTT 867
Query 923 GTGGATAAGTGGAGGTGGACACTGTGACCTTGAACTCTATCCAGATTTCATCAGACATCT 982
||| || |||||| |||||||| | || |||||||||||||| ||||| | ||||||
Sbjct 868 ATGGGTATCTGGAGGAGGACACTGCAATCTAGAACTCTATCCAGAGTTCATAAAACATCT 927
Query 983 GAAGAAATT 991
|||||||||
Sbjct 928 GAAGAAATT 936
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 52259816140
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5