BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G66930.1
Length=2025
Score E
Sequences producing significant alignments: (Bits) Value
Ahg475786 jgi|Araly1|475786|fgenesh2_kg.2__916__AT1G66930.1 1301 0.0
Ahg475793 jgi|Araly1|475793|fgenesh2_kg.2__923__AT1G66980.1 815 0.0
Ahg925915 jgi|Araly1|925915|scaffold_201476.1 800 0.0
Ahg908243 jgi|Araly1|908243|Al_scaffold_0002_1324 268 9e-71
Ahg925926 jgi|Araly1|925926|scaffold_201487.1 241 2e-62
> Ahg475786 jgi|Araly1|475786|fgenesh2_kg.2__916__AT1G66930.1
Length=1740
Score = 1301 bits (704), Expect = 0.0
Identities = 879/962 (91%), Gaps = 17/962 (2%)
Strand=Plus/Plus
Query 1044 TGCGGAAGTGGTTGGGAGAGGCGGGTTTGGAATAGTTTATAGAGGAACTCTTTGTGATGG 1103
|||| || |||||||||||||||| |||||||| ||||||||||| ||||||||||| ||
Sbjct 769 TGCGCAA-TGGTTGGGAGAGGCGGATTTGGAATTGTTTATAGAGGTACTCTTTGTGACGG 827
Query 1104 CCGTATGGTTGCGGTGAAGGTCTTGAAAGAATCAAAGGGTAATAATAGCGAAGACTTTAT 1163
|||| | ||||||||||||||||||||||||||||||||||||||||| |||||||| ||
Sbjct 828 CCGTGTTGTTGCGGTGAAGGTCTTGAAAGAATCAAAGGGTAATAATAGTGAAGACTTCAT 887
Query 1164 AAATGAAGTTTCTAGCATGAGCCAAACATCTCATGTCAACATTGTTTCTCTTCTTGGATT 1223
||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct 888 CAATGAAGTTTCTAGCATGAGCCAAACATCTCATGTCAACATTGTTTCACTGCTTGGATT 947
Query 1224 CTGCTCTGAAGGTTCAAGAAGAGCTATTATATATGAATTTTTGGAGAATGGGTCACTCGA 1283
||||||||||||||||| ||||||||||||||||||||||||||| |||||||| || ||
Sbjct 948 CTGCTCTGAAGGTTCAAAAAGAGCTATTATATATGAATTTTTGGAAAATGGGTCTCTAGA 1007
Query 1284 TAAGTTCATCTCGGAAAAGACTTCAGTGATTTTGGACTTGACGGCACTGTATGGGATCGC 1343
|||||||||||| |||| ||||||||||| ||||||||||||| ||||||||||||||||
Sbjct 1008 TAAGTTCATCTCAGAAAGGACTTCAGTGAATTTGGACTTGACGACACTGTATGGGATCGC 1067
Query 1344 GCTAGGCGTTGCTCGTGGTCTAGAGTACTTGCATTATGGCTGCAAAACGAGGATTGTGCA 1403
|||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1068 GCTAGGAGTTGCTCGTGGTCTAGAGTACTTGCATTATGGCTGCAAAACAAGGATTGTGCA 1127
Query 1404 TTTCGACATTAAACCTCAAAACGTTTTGTTGGATGATAATCTTTCCCCGAAAGTTTCTGA 1463
|||||||||||||||||| ||||| |||||||||||||||||||||| |||||||||||
Sbjct 1128 TTTCGACATTAAACCTCAGAACGTGCTGTTGGATGATAATCTTTCCCCTAAAGTTTCTGA 1187
Query 1464 TTTCGGACTTGCTAAACTATGCGAGAAGAAAGAGAGTGTCATGTCATTGATGGATACAAG 1523
|||||||||||||||||| ||||||||||| ||||| || | ||| || |||| |||||
Sbjct 1188 TTTCGGACTTGCTAAACTCTGCGAGAAGAAGGAGAGCATCTTCTCAATGTTGGACACAAG 1247
Query 1524 AGGTACAATAGGATACATTGCACCAGAGATGATCTCTCGAGTTTATGGGAGTGTTTCTCA 1583
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1248 AGGTACAATAGGATACATTGCACCAGAGATGATCTCTCGAGTTTATGGGAGTGTTTCTCA 1307
Query 1584 CAAGTCAGATGTGTATAGCTACGGAATGTTGGTCTTCGAAATGATAGGTGCAAGGAAGAA 1643
|||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1308 CAAGTCGGATGTGTATAGCTACGGAATGTTGGTCCTCGAAATGATAGGTGCAAGGAAGAA 1367
Query 1644 AGAACGATTTGGTCAAA-A-CT-C-TGCGAACGGAAGTTCAATGTACTTTCCAGAATGGA 1699
||| |||||| ||||| | || | | |||||| ||| |||||||| |||||||||||||
Sbjct 1368 GGAAAGATTTGATCAAACATCTACAT-CGAACGAAAGCTCAATGTATTTTCCAGAATGGA 1426
Query 1700 TATATAAGGATCTTGAGAAGGCAGACAATGGGGATCTTGAGCA-----T----ATCGAGA 1750
| ||||||||||||||||||||||||| || |||| ||||| | | |||||||
Sbjct 1427 TCTATAAGGATCTTGAGAAGGCAGACAGTGAGGATATTGAGAAGGGAATGCGTATCGAGA 1486
Query 1751 TTGGAATCAGCAGCGAGGAAGAGGAGATAGCAAAGAAGATGACATTGGTGGGTTTGTGGT 1810
||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1487 ATGGAATCAGCAGCGAAGAAGAGGAGATAGCAAGGAAGATGACATTGGTGGGTTTGTGGT 1546
Query 1811 GTATTCAGTCTTCCCCATCAGATCGTCCACCGATGAACAAAGTTGTAGAGATGATGGAAG 1870
||||||||| |||||||||||| || ||||| ||||||| ||| ||||||||||||||||
Sbjct 1547 GTATTCAGTGTTCCCCATCAGACCGCCCACCAATGAACAGAGTAGTAGAGATGATGGAAG 1606
Query 1871 GAAGTTTGGATGCTCTTGAAGTTCCACCTAGACCTGTTTTGCAGCAAATTCATGTAGGAC 1930
||||||||||| |||||||||| |||||||||||||||||||| ||||||| ||||| ||
Sbjct 1607 GAAGTTTGGATACTCTTGAAGTGCCACCTAGACCTGTTTTGCAACAAATTCCTGTAGTAC 1666
Query 1931 CTCTTCTTGAATCTTCTTGGATTACTGAGGAAAGTTCAAGCA-TCTCCGAGATTGAAAAT 1989
||||||||||||||||||||||| | |||||| |||||| || |||| ||||||||||||
Sbjct 1667 CTCTTCTTGAATCTTCTTGGATTTCAGAGGAAGGTTCAA-CAATCTCTGAGATTGAAAAT 1725
Query 1990 AG 1991
||
Sbjct 1726 AG 1727
Score = 835 bits (452), Expect = 0.0
Identities = 610/684 (89%), Gaps = 19/684 (3%)
Strand=Plus/Plus
Query 2 TGAATCTGACCCATTTGGAAAGTGCTCTAAGAAAAGGTTTTGAAGTGAAGCTGGTGATCG 61
||||| ||||||||||||||||||||||||||||||| ||||| ||||||||| ||||||
Sbjct 11 TGAATTTGACCCATTTGGAAAGTGCTCTAAGAAAAGGGTTTGAGGTGAAGCTGATGATCG 70
Query 62 ATGAGATACCGTGTCAAGAATGTTCATCCAGTCGTGGAATCTGTGGTTTCAACAGTACCA 121
||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||
Sbjct 71 ATGAGATACCGTGTCAAGAATGTTCGTCCACTCGTGGAATCTGTGGTTTCAACAGTACCA 130
Query 122 CACAGATATGCTGCAACGTAACCTC-ACTTTCTGGTGGAGTTACTTGCGTACCACAACAT 180
||||||| ||||||||||||||||| || ||||||||||||||||||||||||||||||
Sbjct 131 CACAGATTTGCTGCAACGTAACCTCAAC-ATCTGGTGGAGTTACTTGCGTACCACAACAT 189
Query 181 CAACCTAGCGCTGATGAGCTTAGGCGCCGCTGTAGTGAACGGTTTAGCTGCGGCAATCAG 240
|||||||| |||||| ||||| | ||||| |||||||||||||||||||||||||||
Sbjct 190 CAACCTAGTGCTGATTTGCTTAAGAAACGCTGCAGTGAACGGTTTAGCTGCGGCAATCAG 249
Query 241 AGAAATCTCTATTACCCCTTTTGGATACCTGGTC-GAGAATATTGTGGCCACCCTGACTT 299
|| |||||||||||||||| ||||||||||| | | ||||| |||||||||||||||||
Sbjct 250 CGAGATCTCTATTACCCCTTCTGGATACCTGG-CAGGGAATACTGTGGCCACCCTGACTT 308
Query 300 CAAGCTTGACTGTAGCGGAGGATTCGCAGAGCTTAACATAGCCTCCGTGAATTTCAGAAT 359
|||||| || |||||| |||||||||||||| ||||||| ||||||||||| |||| |||
Sbjct 309 CAAGCTCGATTGTAGCAGAGGATTCGCAGAGATTAACATCGCCTCCGTGAAGTTCAAAAT 368
Query 360 CTTAAATATGAGTTATGACTCTTCTAACAAAAGACTTGCCAGATCAGACTATCTCAACGA 419
| |||||||||| |||||||||||| || |||||| || |||||||| ||| || |||
Sbjct 369 CATAAATATGAGCCATGACTCTTCTACCATAAGACTCGCAAGATCAGATTATATCGGCGA 428
Query 420 TCTTTGTCCCCCAAACCCACTAAATGATGAGCCTCTCATCGAAA-CAGTCCTTCAATTCA 478
|| |||||||||||||||| ||||||| | || ||||| |||| | |||||||||||||
Sbjct 429 TCCTTGTCCCCCAAACCCATTAAATGA-G--CCACTCATTGAAAAC-GTCCTTCAATTCA 484
Query 479 GTGCTGACACAGAG-TTGCTAACATTATATTACGACTGCCAACTTAATTCATCTGCTACT 537
|||||||||||||| || |||||||||||||||||||||||||| || ||||| | || |
Sbjct 485 GTGCTGACACAGAGCTT-CTAACATTATATTACGACTGCCAACTAAACTCATCGGTTA-T 542
Query 538 TCTCCTTTTCCTAGTAGCTACTTTGGAGAGCTTGGTTGTGATGAG-GGAAGAAGTTACTA 596
| || | | || ||||||| ||||||||||||||||||||| | |||||||||||||
Sbjct 543 T-TC-TG--C-TACTAGCTACATTGGAGAGCTTGGTTGTGATG-GTGGAAGAAGTTACTT 596
Query 597 TGTAACGAGAAACCTCTCATCTCCTTTACTTGACAGGTTTAGAGGAGTTTTAAACAACTT 656
|||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 597 TGTAACGAAAAACCTCTCATCTCCTTTACTTGACAGGTTTAGAGGCGTTTTAAACAACTT 656
Query 657 AAGAGAAATGTGCAAAAGAAAAGT 680
||| | ||||||||||||||||||
Sbjct 657 AAGGGGAATGTGCAAAAGAAAAGT 680
Score = 132 bits (71), Expect = 1e-29
Identities = 91/100 (91%), Gaps = 4/100 (4%)
Strand=Plus/Plus
Query 925 AAAGTCCGAATTTTCCGGAATAGAAAAACATCAGATGATCGGAGACAAGAGAAGCTAA-- 982
||||| ||||||||||| || ||||||||||||||||||||| |||||||||||||||
Sbjct 676 AAAGTTCGAATTTTCCGAAAGAGAAAAACATCAGATGATCGGCGACAAGAGAAGCTAATT 735
Query 983 A--GGCCCTTATTCCACTCAAACATTATACTTATGCACAA 1020
| ||||||||||||||||||||||||||||||||| |||
Sbjct 736 AAAGGCCCTTATTCCACTCAAACATTATACTTATGCGCAA 775
> Ahg475793 jgi|Araly1|475793|fgenesh2_kg.2__923__AT1G66980.1
Length=3307
Score = 815 bits (441), Expect = 0.0
Identities = 801/971 (82%), Gaps = 40/971 (4%)
Strand=Plus/Plus
Query 966 GAGACAAGAGAAGCTAAAGGCCCTTATTCCACTCAAACATTATACTTATGCACAAGTAAA 1025
||||||| ||||||| ||||| ||||||||||| |||| |||||||||||||| || ||
Sbjct 2256 GAGACAACAGAAGCTGAAGGCTCTTATTCCACTGGAACACTATACTTATGCACAGGTGAA 2315
Query 1026 GAGAATGACAAAGTCATTTGCGGAAGTGGTTGGGAGAGGCGGGTTTGGAATAGTTTATAG 1085
|||||| |||||||||||||||||| | |||||||||||||| |||||||| |||||||
Sbjct 2316 GAGAATTACAAAGTCATTTGCGGAAATTGTTGGGAGAGGCGGATTTGGAATTGTTTATAA 2375
Query 1086 AGGAACTCTTTGTGATGGCCGTATGGTTGCGGTGAAGGTCTTGAAAGAATCAAAGGGTAA 1145
|||||| ||| ||||||||||| |||||||||| |||||||||||||| ||||| ||
Sbjct 2376 AGGAACACTTAGTGATGGCCGTGTGGTTGCGGTTAAGGTCTTGAAAGACTCAAAAGG--- 2432
Query 1146 TAATAGCGAAGACTTTATAAATGAAGTTTCTAGCATGAGCCA-AACATCTCATGTCAACA 1204
|||| | |||||||| || ||||| ||| | |||||||| || ||| |||||| ||||||
Sbjct 2433 TAATGGTGAAGACTTCATGAATGAGGTTGCGAGCATGAG-CAGAACTTCTCATCTCAACA 2491
Query 1205 TTGTTTCTCTT-CTTGGATTCTGCTCTGAAGGTT-CAAGAAGAGCTATTATATATGAATT 1262
||||||| ||| ||||| |||||||| ||||||| ||| ||| || ||||||||||| ||
Sbjct 2492 TTGTTTC-CTTGCTTGGTTTCTGCTCAGAAGGTTCCAA-AAGGGCAATTATATATGAGTT 2549
Query 1263 TTTGGAGAATGGGTCACTCGATAAGTTCATCTC-GGAAAAGACTTCAGT-GATTTTGGAC 1320
|||||| ||||||||||| |||||||| ||||| || ||||| || || || | ||||
Sbjct 2550 TTTGGAAAATGGGTCACTTGATAAGTTTATCTCAGG-CAAGACCTCCGTGGA-TATGGA- 2606
Query 1321 TT-GACGGCACTGTATGGGATCGCGCTAGGCGTTGCTCGTGGTCTAGAGTACTTGCATTA 1379
|| |||| |||| ||| | || |||||||| ||||| |||||| ||||||||||||| |
Sbjct 2607 TTGGACGACACTATATAGAATTGCGCTAGGAGTTGCCCGTGGTTTAGAGTACTTGCACCA 2666
Query 1380 TGGCTGCAAAACGAGGATTGTGCATTTCGACATTAAACCTCAAAACGTTTTGTTGGATGA 1439
| |||||||||| |||||||| ||||| ||||||||||| ||||| || | || |||||
Sbjct 2667 TAGCTGCAAAACAAGGATTGTACATTTTGACATTAAACCACAAAATGTACTCTTAGATGA 2726
Query 1440 TAATCTTT-CCCCGAAAGTTTCTGA-TTTCGGACTTGCTAAACTATGCGAGAAGAAAGAG 1497
||| ||| ||| |||||||| || ||| || || ||||| || || ||||||||||||
Sbjct 2727 CAATTTTTGTCCC-AAAGTTTCGGACTTT-GGTCTCGCTAAGCTCTGTGAGAAGAAAGAG 2784
Query 1498 AGTGTCATGTCAT-TGATGGATACAAGAGGTACAATAGGATACATTGCACCAGAGATGAT 1556
|| | | || | || |||| ||||||||||| ||||| ||||||||||||||||||||
Sbjct 2785 AGCATTTTTTC-TATGCTGGACACAAGAGGTACCATAGGGTACATTGCACCAGAGATGAT 2843
Query 1557 CTCTCGAGTTTATGGGAGTGTTTCTCACAAGTCAGATGTGTATAGCTACGGAATGTTGGT 1616
|| |||||||||||| ||| || ||||| ||||||||||||||||| |||||||| ||
Sbjct 2844 TTCGAGAGTTTATGGGAATGTGTCGCACAAATCAGATGTGTATAGCTATGGAATGTTAGT 2903
Query 1617 -CTTCGAAATGATAGGTGCAAGGAAGAAAGAACGATTTGGTCAA--AACT-CTGCGAACG 1672
||| || || || ||||||||||| |||||| | | |||| || || | |||
Sbjct 2904 CCTT-GAGATAATTGGTGCAAGGAACAAAGAAAAAGCTAATCAAGCCTCTCCTTCTAACA 2962
Query 1673 GAAGTTCAATGTACTTTCCAGAATGGATATATAAGGATCTTGAGAAGGCAGACAA-TGGG 1731
|||||||||||||||||| |||||| |||||| ||||||| ||| ||| ||| | |
Sbjct 2963 CAAGTTCAATGTACTTTCCTGAATGGGTATATAGGGATCTT--GAA-TCAGGCAAGTCCG 3019
Query 1732 GATCTTGAGCATATCGA-GATTGGAATCAGCAGCG-AGGAAGAGGAGATAGCAAAGAAGA 1789
|| | |||||| || || |||||| | || || | ||||| ||| | ||||||||||
Sbjct 3020 GA---AG-GCATATTGAGGA-TGGAATTAACAACGTA-GAAGATGAGCTTGCAAAGAAGA 3073
Query 1790 TGACATTGGTGGGTTTGTGGTGTATTCAGTCTTCCCCA-TCAGATCGTCCACCGATGAAC 1848
||||||||||||||||||||||||||||| |||| || | ||||| ||| ||||||||
Sbjct 3074 TGACATTGGTGGGTTTGTGGTGTATTCAGCCTTCTCCGGTG-GATCGCCCAGCGATGAAC 3132
Query 1849 AAAGTTGTAGAGATGATGGAAGGAAGTTTGGATGCTCTTGAAGTTCCACCTAGACCTGTT 1908
|||||||||||||||||||||||||| ||||| ||||||||||| || ||||| ||||||
Sbjct 3133 AAAGTTGTAGAGATGATGGAAGGAAGCTTGGAAGCTCTTGAAGTCCCTCCTAGGCCTGTT 3192
Query 1909 TTGCAGCAAAT 1919
|||||||||||
Sbjct 3193 TTGCAGCAAAT 3203
> Ahg925915 jgi|Araly1|925915|scaffold_201476.1
Length=1887
Score = 800 bits (433), Expect = 0.0
Identities = 835/1024 (82%), Gaps = 47/1024 (5%)
Strand=Plus/Plus
Query 981 AAAGGCCCTTATTCCACTCAAACATTATA-CTTATGCACAAGTAAAGAGAATGACAAAGT 1039
||| || ||||||||||| || || |||| | || | |||||| |||||||||||||| |
Sbjct 872 AAA-GCACTTATTCCACTGAAGCAGTATAGC-TACGAACAAGTGAAGAGAATGACAAACT 929
Query 1040 CATTTGCGGAAGTGGTTGGGAGAGGCGGGTTTGGAA-TAGTTTATAGAGGAACTCTTTGT 1098
|||| ||||||||||| ||| ||||||| || |||| | || ||||||||||| |||| |
Sbjct 930 CATTCGCGGAAGTGGTCGGGCGAGGCGGATTCGGAACT-GTCTATAGAGGAACCCTTTCT 988
Query 1099 GATGGCCGTATGGTTGCGGTGAAGGTCTTGAAAGAATCAAAGGGTAATAATAGCGAAGAC 1158
||||||||||||||||| ||||||||||||||||| | ||||||||||||| | ||||||
Sbjct 989 GATGGCCGTATGGTTGCAGTGAAGGTCTTGAAAGACTTAAAGGGTAATAATGGTGAAGAC 1048
Query 1159 TTTATAAATGAAGTTTCTAGCATGAGCCAAACATCTCATGTCAACATTGTTTCTCTTCTT 1218
|| || ||||||||| | |||||||||||||| |||||||||||||||||| | ||| ||
Sbjct 1049 TTCATCAATGAAGTTGCAAGCATGAGCCAAACTTCTCATGTCAACATTGTTAC-CTTGTT 1107
Query 1219 -GGATTCTGCTCTGAAGGTT-CAAGAAGAGCTATTATATATGAATTTTTGGAGAATGGGT 1276
||||| || || ||||||| ||| ||||| ||||| || |||||| |||| |||||||
Sbjct 1108 AGGATTTTGTTCCGAAGGTTATAAG-AGAGCAATTATTTACGAATTTATGGAAAATGGGT 1166
Query 1277 CACTCGATAAGTTCATCTCGGAA--AAGACTTCAGTGATTTTGGACTTGACGGCACTGTA 1334
| || |||||||||||||| || |||| ||| | | |||||| || || ||| ||
Sbjct 1167 CTCTTGATAAGTTCATCTC--AAGCAAGAAGTCAACAAATATGGACTGGATGGAACTATA 1224
Query 1335 TGGGATCGCGCTAGGCGTTGCTCGTGGTCTAGAGTACTTGCATTATGGCTGCAAAACGAG 1394
||||||||| |||||||||||||||||||||||||||| || ||||||||| ||| ||
Sbjct 1225 TGGGATCGCATTAGGCGTTGCTCGTGGTCTAGAGTACTTACACCATGGCTGCAGAACAAG 1284
Query 1395 GATTGTGCATTTCGACATTAAACCTCAAAACGTTTTGTTGGATGATAATCTTTCCCCGAA 1454
||||| ||||||||||| ||||| || || || | || ||||| ||||||||||||||
Sbjct 1285 AATTGTACATTTCGACATAAAACCACAGAATGTACTCTTAGATGACAATCTTTCCCCGAA 1344
Query 1455 AGTTTCTGA-TTTCGGACTTGCTAAACTATGCGAGAAGAAAGAGAGTGTCATGTCATTGA 1513
|||||| || ||| || |||||||| |||||||||| |||||| ||| || ||||| | |
Sbjct 1345 AGTTTCAGACTTT-GGCCTTGCTAAGCTATGCGAGAGGAAAGAAAGTATCTTGTCACT-A 1402
Query 1514 -TGGATACAAGAGGTACAATAGGATACATTGCACCAGA-GATGATCTCTCGAGTTTATGG 1571
|||| |||||||| || ||||| ||||||||||| || | || | || |||| || ||
Sbjct 1403 CTGGACACAAGAGGAACGATAGGGTACATTGCACCTGAAG-TGTTTTCAAGAGTGTACGG 1461
Query 1572 GAGTGTTTCTCACAAGTCAGATGTGTATAGCTACGGAATGTTGGT-CTTCGAAATGATAG 1630
|| || || ||||||||||||||||||||||| ||||||||| | || ||| || ||||
Sbjct 1462 TAGAGTCTCCCACAAGTCAGATGTGTATAGCTATGGAATGTTGATTCT-CGATATAATAG 1520
Query 1631 GTGCAAGGAAGAAAGAACGATTTGGTC-AA--AACT-C-TGCGAACGGAAGTTCAATGTA 1685
| || ||||| ||| | | || | || |||| | | | | | ||| ||||||||
Sbjct 1521 GAGCTAGGAACAAA-A-C-ATCAAC-CGAAGGAACTACAT-CTAGCACAAGCTCAATGTA 1575
Query 1686 CTTTCCAGAATGGATATATAAGGATCTTGAGAAGGCAGACAATGGGGATCTTGAGCATAT 1745
|||||| |||||||||||||||||||||||||||| ||||||||| | | || |||
Sbjct 1576 CTTTCCCGAATGGATATATAAGGATCTTGAGAAGGGAGACAATGGA-A----G-GCTTAT 1629
Query 1746 CGAGATTGGAATCAGCAGCGAGGAAGAGGAGATAGCAAAGAAGATGACATTGGTGGGTTT 1805
||||| | |||| || ||||| ||||| |||||||||||||||||||| ||||| |||||
Sbjct 1630 CGAGAATAGAATAAGTAGCGAAGAAGATGAGATAGCAAAGAAGATGACGTTGGTAGGTTT 1689
Query 1806 GTGGTGTATTCAGTCTTCCCCATCAGATCGTCCACCGATGAACAAAGTTGTAGAGATGAT 1865
||||||||||||| ||| ||||||||||| ||| ||||||||| ||| |||||||||||
Sbjct 1690 GTGGTGTATTCAGCCTTGGCCATCAGATCGCCCAGCGATGAACAGAGTGGTAGAGATGAT 1749
Query 1866 GGAAGGAAGTTTGGATGCTCTTGAAGTTCCACCTAGACCTGTTTTGCAGCAAA-TTCATG 1924
|||||||| |||||||||||||||| || ||||||||||||||| | || ||| |
Sbjct 1750 GGAAGGAAACCTGGATGCTCTTGAAGTGCCTCCTAGACCTGTTTTG--G-AATGTTCC-G 1805
Query 1925 TAG-GACCTCTTCTTGAATCTTCTTGGATTACTGAGGAAAGTTCAAGCATC-TCCGAGAT 1982
||| | |||| ||| || ||||| |||||| | ||||||| ||||| | || || |||||
Sbjct 1806 TAGTG-CCTCATCTCGATTCTTCCTGGATTTCAGAGGAAAATTCAATC-TCCTCTGAGAT 1863
Query 1983 -TGA 1985
|||
Sbjct 1864 ATGA 1867
> Ahg908243 jgi|Araly1|908243|Al_scaffold_0002_1324
Length=1116
Score = 268 bits (145), Expect = 9e-71
Identities = 173/187 (93%), Gaps = 0/187 (0%)
Strand=Plus/Plus
Query 2 TGAATCTGACCCATTTGGAAAGTGCTCTAAGAAAAGGTTTTGAAGTGAAGCTGGTGATCG 61
||||| ||||| |||| ||||||| |||||||||||||||||| |||||||||| ||| |
Sbjct 551 TGAATTTGACCAATTTAGAAAGTGTTCTAAGAAAAGGTTTTGATGTGAAGCTGGCGATTG 610
Query 62 ATGAGATACCGTGTCAAGAATGTTCATCCAGTCGTGGAATCTGTGGTTTCAACAGTACCA 121
|||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||
Sbjct 611 ATGAGATACCGTGTCAAGAATGTTTATCCACTCGTGGAATCTGTGGTTTCAACAGTACCA 670
Query 122 CACAGATATGCTGCAACGTAACCTCACTTTCTGGTGGAGTTACTTGCGTACCACAACATC 181
||||||| ||||| ||||||||||||| ||||| |||||||||||||||||||||||||
Sbjct 671 CACAGATTTGCTGTAACGTAACCTCACCATCTGGCGGAGTTACTTGCGTACCACAACATC 730
Query 182 AACCTAG 188
|||||||
Sbjct 731 AACCTAG 737
Score = 259 bits (140), Expect = 5e-68
Identities = 201/230 (87%), Gaps = 6/230 (3%)
Strand=Plus/Plus
Query 565 GAGCTTGGTTGTGATGAGGGAAGAAGTTACTATGTAACGAGAAACCTCTCATCTCCTTTA 624
||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||
Sbjct 739 GAGCTTGGTTGTGATGAGGGAAGAAGTTACTATGTGACGAGAAACCTCTCCTCTCCTTTA 798
Query 625 CTTGACAGGTTTAGAGGAGTTTTAAACAACTTAAGAGAAATGTGCAAAAGAAAAGTCAGT 684
||||||| || |||||| || |||||||||| || ||||||||||||||||| ||||||
Sbjct 799 CTTGACACGTCTAGAGGCCTTCTAAACAACTTTAGGGAAATGTGCAAAAGAAACGTCAGT 858
Query 685 GTTCCTGCGTCTGGACCGGCGTTAAAC-ACACTTCAGACAAA-TCCAAATTCAAACAATC 742
|||||||||||||||| |||||| || | || |||| ||| ||||||| || | ||||
Sbjct 859 GTTCCTGCGTCTGGACAAGCGTTATACGAT-CTGCAGA-AAAGTCCAAATCCAGATAATC 916
Query 743 TAAAGATGGCTCTTGAACATGGTTTTGA-GCTTCAAGATAACTCAAATTG 791
| ||||||||||||||||| |||||| | |||| ||| ||||||| ||||
Sbjct 917 TGAAGATGGCTCTTGAACAAGGTTTT-ACGCTTGAAGTTAACTCAGATTG 965
> Ahg925926 jgi|Araly1|925926|scaffold_201487.1
Length=851
Score = 241 bits (130), Expect = 2e-62
Identities = 168/187 (90%), Gaps = 0/187 (0%)
Strand=Plus/Plus
Query 2 TGAATCTGACCCATTTGGAAAGTGCTCTAAGAAAAGGTTTTGAAGTGAAGCTGGTGATCG 61
||||| ||||||||||||||||||||||| |||| || ||||| ||||||||||||||||
Sbjct 568 TGAATTTGACCCATTTGGAAAGTGCTCTACGAAATGGGTTTGAGGTGAAGCTGGTGATCG 627
Query 62 ATGAGATACCGTGTCAAGAATGTTCATCCAGTCGTGGAATCTGTGGTTTCAACAGTACCA 121
|||||||||||||||||||||||||||||| | ||||||| |||||||||||||||||||
Sbjct 628 ATGAGATACCGTGTCAAGAATGTTCATCCACTAGTGGAATTTGTGGTTTCAACAGTACCA 687
Query 122 CACAGATATGCTGCAACGTAACCTCACTTTCTGGTGGAGTTACTTGCGTACCACAACATC 181
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Sbjct 688 CACAGATTTGCTGCAACGTAACCTCACCACCAGGACGAGATAGTTGCGTTCCACAACATA 747
Query 182 AACCTAG 188
|||||||
Sbjct 748 AACCTAG 754
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 76142399755
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5