BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G66940.1
Length=1279
Score E
Sequences producing significant alignments: (Bits) Value
Ahg315717 jgi|Araly1|315717|fgenesh1_pm.C_scaffold_2000750 1380 0.0
Ahg908243 jgi|Araly1|908243|Al_scaffold_0002_1324 401 5e-111
Ahg908232 jgi|Araly1|908232|Al_scaffold_0002_1313 255 4e-67
> Ahg315717 jgi|Araly1|315717|fgenesh1_pm.C_scaffold_2000750
Length=960
Score = 1380 bits (747), Expect = 0.0
Identities = 882/946 (93%), Gaps = 14/946 (1%)
Strand=Plus/Plus
Query 108 ATGTATCATCTTCCCACTTCTTGTCTAGTTATATTCTTCCTCCTCTCCTTATTTCACCCT 167
||||| ||||||||||||||||||||||| ||||||||||||||||| ||||||||||||
Sbjct 1 ATGTACCATCTTCCCACTTCTTGTCTAGTCATATTCTTCCTCCTCTCTTTATTTCACCCT 60
Query 168 CTTCCTTGTGATTCAAGTAATCAAGGACTTGGCTGGTGTGAGACTTTGTTTCAGTGCGGA 227
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 61 CTTCCTTGTGATTCAAGTAATCAAGGACTTGGCTGGTGTGAGACTTTGTTTCAGTGTGGA 120
Query 228 AACATCACCGCTGGTTTCCCCTTCTCGGGTGGGAATCGTCATAAAGAATGCGGTCATCCA 287
||||||||||||||||| ||||||||||| ||||||||||| ||||| ||||| ||||||
Sbjct 121 AACATCACCGCTGGTTTTCCCTTCTCGGGAGGGAATCGTCACAAAGATTGCGGGCATCCA 180
Query 288 TCGCTGGAGCTTCACTGCAACAAAAACAACATCACCTCTTTATTCATCTCAAACCAAAAG 347
||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||
Sbjct 181 TCGCTGGAGCTTCACTGCAACAAAAACTACATCACCTCTCTATTCATCTCAAACCAAAAA 240
Query 348 TACTCTGTTCTCCGTATAGATCAAACATCTAACACTCTTACACTTGCCAAAC-AGAACCT 406
||||||||||||| ||||||||||| ||||||||||||||||||| |||||| || ||||
Sbjct 241 TACTCTGTTCTCCATATAGATCAAATATCTAACACTCTTACACTTACCAAACAAG-ACCT 299
Query 407 TCTAGGTTCTTTTTGCTCCTCTGTATTCACAAACACAACCTTGCCTCCCGAAACTTTCGA 466
|||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||
Sbjct 300 TCTAGGTTCTTTTTGCTCCTCTGTATTCACCAACACAACCTTGCCTCCGGAAACTTTCGA 359
Query 467 GCTTTCACGGACCTACAAGAGCGTCACTATATTCTACCAATGCTCCTCTGTGCTTCCTAA 526
|||| ||| |||||| ||||||||||| ||||||||||||||||||||| ||||||||||
Sbjct 360 GCTTCCACCGACCTATAAGAGCGTCACCATATTCTACCAATGCTCCTCTTTGCTTCCTAA 419
Query 527 CCTTTCTAGCTATACATGTCCTGAGATAGGTCCCATCTCAGTGTCTGAAAGCCCTGAAAA 586
||||||||||||||||||||| | ||||||||||||| |||||||||||| |||||||||
Sbjct 420 CCTTTCTAGCTATACATGTCCCGGGATAGGTCCCATCGCAGTGTCTGAAAACCCTGAAAA 479
Query 587 ATATCCTGAGAGCTGTCGTTCCAGTTTCACCGTGAAGGTTCCCACGAGTTTCGATACAAA 646
| ||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||
Sbjct 480 ACATCCTGAGAGCTGCCGTTCCAGTTTCACCGTGAAGGTTCCTACGAGTTTCGATACAAA 539
Query 647 AGAGAAAGAGTTGAATGTGACCAATTTGGAAAGTGTTTTAAGAAAAGGATTTGAGGTGAC 706
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 540 AGAGAAAGAGTTGAATGTGACCAATTTGGAAAGTGTTTTAAGAAAAGGATTTGAGGTGAA 599
Query 707 GGTGGTGATCAATGAGAATACATGTCAGGAATGTTTATCCTCTCTTGGAAGATGTCATGT 766
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 600 GGTGGTGATCAATGAGAATACATGTCAGGAATGTTTATCCTCTCTTGGAAGATGTCATGG 659
Query 767 CTTCAACGAAAACTTAACACCAGGAGTTAAATGTCGTCCACCAAGTGACTCTGAGGGTTC 826
||||| ||||||||||||||||||| | |||||||||||||||| |||||||||||
Sbjct 660 CTTCACCGAAAACTTAACACCAGGA-T-----GTCGTCCACCAAGTGATTCTGAGGGTTC 713
Query 827 TTGTGGATATAATCAGACCTCAAGTACGTTCCTCTGCTATTGTAAGGATCCGTATAGCCT 886
||||||||||||||||||||||||||||||| | ||||||||||| || |||||||||||
Sbjct 714 TTGTGGATATAATCAGACCTCAAGTACGTTCGTATGCTATTGTAAAGACCCGTATAGCCT 773
Query 887 ATCATGCAGTTCGGGCAAATCTAATATTAGATGGATAATAGGTGGTGTGTTGATCTTGAT 946
|||||||||||| ||||||||| | || ||||||||||||||||||| |||||||||||
Sbjct 774 ATCATGCAGTTCTGGCAAATCTTTTGTTGGATGGATAATAGGTGGTGTATTGATCTTGAT 833
Query 947 ACTCATAGTATCAGGTATTATTGTTTCCTTGGTGTTTCTTTGCCTATGTTGCCGAGCCAA 1006
||||||| | | | | ||||||||||||||||||||||||| |||||| ||||||||
Sbjct 834 TCTCATAGG-T--G-T-T-ATTGTTTCCTTGGTGTTTCTTTGCCGATGTTGTCGAGCCAA 887
Query 1007 GATTGTCAGAAAGAAAAAATCATCAGATGCTCTTGAAGTCCCTCCT 1052
|||| | |||||||||||| ||||||||||||||||||||||||||
Sbjct 888 GATTTTGAGAAAGAAAAAAACATCAGATGCTCTTGAAGTCCCTCCT 933
> Ahg908243 jgi|Araly1|908243|Al_scaffold_0002_1324
Length=1116
Score = 401 bits (217), Expect = 5e-111
Identities = 501/634 (79%), Gaps = 36/634 (6%)
Strand=Plus/Plus
Query 141 TTCTTCCTCCTCTCCTTATTTC-ACCCTCTTCCTTGTGATTCAAGTAATCAAGGACTTGG 199
||||||||| |||||||| ||| ||| ||||||||||| ||||||||| |||||||||||
Sbjct 34 TTCTTCCTCTTCTCCTTA-TTCTACCATCTTCCTTGTGCTTCAAGTAAACAAGGACTTGG 92
Query 200 CTGGTGTGAGACTTTGTTTCAGTGCGGAAACATCACCGCTGGTTTCCCCTTCTCGGGTGG 259
||||||||| || |||||||||| || |||||||| |||| ||||||||| | ||| ||
Sbjct 93 ATGGTGTGAGTCTCTGTTTCAGTGTGGGAACATCACTGCTGATTTCCCCTTTTGGGGCGG 152
Query 260 GAATCGTCATAAAGAATGCGGTCATCCATCGCTGGAGCTTCACTGCAACAAAAACAACAT 319
|| |||||| ||| ||||||||||| | ||| ||||||||||||||||| ||||||||
Sbjct 153 GAGTCGTCACAAACCTTGCGGTCATCCGTTGCTAGAGCTTCACTGCAACAATAACAACAT 212
Query 320 CACCTCTTTATTCATCTCAAACCAAAAGTACTCTGTTC-TC--CGTATAGATCAAACATC 376
||||||||||||||||||||| ||| ||| || ||||| || | || | ||||||| ||
Sbjct 213 CACCTCTTTATTCATCTCAAATCAAGAGTTCTATGTTCGTCAAC-TA-A-ATCAAACTTC 269
Query 377 TAACACTCTTACACTTGCCAAA-CAGAACCTTCTAGGTTCTTTTTGCTCCTCTGTATTCA 435
||||| |||||| ||||| | | |||| |||| ||||||||||||||||||| | | ||
Sbjct 270 TAACATTCTTACGCTTGCTAGATCAGA-CCTTTTAGGTTCTTTTTGCTCCTCC-TCTGCA 327
Query 436 --CAA-AC-ACAACCTTGCCTCCCGAAA-CTTTCGAGCTTTCACGGACCTACAAGAGCGT 490
||| || ||||||||||||||||||| |||| |||||| | | || || |||||| |
Sbjct 328 TACAATACCACAACCTTGCCTCCCGAAATCTTT-GAGCTTCCCCCAACTTATAAGAGCCT 386
Query 491 CACTATATTCTACCAATGCTCCTCTGT-GCTTCCTAACCTTTCTAGCTATACATGTCCTG 549
|| | || ||||| || | || |||| || ||| || || |||||||||||||
Sbjct 387 AACCGTTTTATACCACTG-TGATCCAAAGCTTTCTTACCGCTCGAGTTATACATGTCCTG 445
Query 550 AGATAGGTCCCATCTCAGTGTCTGAAAGCCCTGAAAAATATCCTGAGAGCTGTCGTT-CC 608
||||| | | ||||||||| |||||| ||| || || | | | || || ||
Sbjct 446 CTCTAGGTACTTTTTCAGTGTCTCAAAGCCTTGAG---TA-CCAGT-A--T-TC-TTGCC 496
Query 609 AG---T-TT-CACCGTGAAGGTTCCCACGAGTTTCGATACAAAAGAGAAAGAGTTGAATG 663
| | || | | || || ||||| ||||||||| || || |||||| || |||||||
Sbjct 497 AAAAATATTTCTCGGTTAATGTTCCAACGAGTTTCAATCCAGAAGAGAGAGGGTTGAATT 556
Query 664 TGACCAATTTGGAAAGTGTTTTAAGAAAAGGATTTGAGGTGACGGTGGTGATCAATGAGA 723
|||||||||| ||||||||| |||||||||| ||||| |||| | ||| ||| ||||||
Sbjct 557 TGACCAATTTAGAAAGTGTTCTAAGAAAAGGTTTTGATGTGAAGCTGGCGATTGATGAGA 616
Query 724 ATACA-TGTCAGGAATGTTTATCCTCTCTTGGAA 756
||| ||||| |||||||||||| ||| |||||
Sbjct 617 -TACCGTGTCAAGAATGTTTATCCACTCGTGGAA 649
> Ahg908232 jgi|Araly1|908232|Al_scaffold_0002_1313
Length=879
Score = 255 bits (138), Expect = 4e-67
Identities = 302/378 (80%), Gaps = 23/378 (6%)
Strand=Plus/Plus
Query 108 ATGTATCATCTTCCC-ACTTCTTGTC--TAGTT-ATATTCTT--CC-TCCTCTCCTTATT 160
||||| || | |||| |||||||||| | || | ||||| || || ||||||||||
Sbjct 1 ATGTACCA-CCTCCCAACTTCTTGTCTGTTCTTCTTCTTCTTCCCCTTCTTCTCCTTATT 59
Query 161 TCACCCTCTTCCTTGTGATTCAAGTAATCAAGGACTTGGCTGGTGTGAGA-CTTTGTTTC 219
||||| | ||||| || ||||||||| |||| |||||| |||||||| | || |||||
Sbjct 60 TCACCATTTTCCTCATGTTTCAAGTAAACAAGAACTTGGTTGGTGTGA-ATCTCAGTTTC 118
Query 220 AGTGCGGAAACATCACCGCTGGTTTCCCCTTCTCGGGTGGGAATCGTCATAAAGAAT-GC 278
|||| ||||||||||||||||||||||||||||| ||||||| ||||| || | | ||
Sbjct 119 AGTGTGGAAACATCACCGCTGGTTTCCCCTTCTCCGGTGGGATTCGTCCCCAA-ATTTGC 177
Query 279 GGTCATCCATCGCTGGAGCTTCACTGCAACAAAAACAACATCACCTCTTTATTCATCTCA 338
|||||||||||||| |||||||||||| || ||| ||| |||||| || ||||||||
Sbjct 178 GGTCATCCATCGCTAGAGCTTCACTGCTTTAACAAC--CAT-ACCTCTATAATCATCTCA 234
Query 339 AACCAAAAGTACTCTGTTCTCCGTATAGATCAAACATCTAACACTCTTACACTTGCCAAA 398
|||| ||| |||||||| |||||||||||||||||||||||||| ||| || | |
Sbjct 235 GACCATCTTTACAATGTTCTCCATATAGATCAAACATCTAACACTCTTAGACTCGCTAGA 294
Query 399 -CAGAACCTTCTAGGTTC-TTTTTGCTCCTCTGT-ATTCACAAACACAACCTTGCCTCCC 455
|||| | ||| |||||| ||||| | | || | ||||||| ||||||||| ||| |
Sbjct 295 GCAGAGC-TTCAAGGTTCATTTTT-CAACGCT-TCATTCACAGCCACAACCTTACCTTAC 351
Query 456 GAAA-CTTTCGAGCTTTC 472
|||| |||| ||||||||
Sbjct 352 GAAATCTTT-GAGCTTTC 368
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 47806137918
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5