BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G67000.1
Length=2830
Score E
Sequences producing significant alignments: (Bits) Value
Ahg475786 jgi|Araly1|475786|fgenesh2_kg.2__916__AT1G66930.1 1149 0.0
Ahg908243 jgi|Araly1|908243|Al_scaffold_0002_1324 1048 0.0
Ahg475793 jgi|Araly1|475793|fgenesh2_kg.2__923__AT1G66980.1 749 0.0
Ahg925915 jgi|Araly1|925915|scaffold_201476.1 641 0.0
Ahg925925 jgi|Araly1|925925|scaffold_201486.1 435 1e-120
> Ahg475786 jgi|Araly1|475786|fgenesh2_kg.2__916__AT1G66930.1
Length=1740
Score = 1149 bits (622), Expect = 0.0
Identities = 845/949 (89%), Gaps = 29/949 (3%)
Strand=Plus/Plus
Query 1725 TGGTTGGGAGAGGCGGGTTTGGAATTGTTTATAGCGGAACCCTTAGTGATAGCAGTATGG 1784
|||||||||||||||| ||||||||||||||||| || || ||| |||| || || | |
Sbjct 776 TGGTTGGGAGAGGCGGATTTGGAATTGTTTATAGAGGTACTCTTTGTGACGGCCGTGTTG 835
Query 1785 TTGCGGTAAAGGTCTTGAAAGATTCAAAGGGTACTGATGGTGAAGACTTCATTAATGAAG 1844
||||||| |||||||||||||| |||||||||| | || ||||||||||||| |||||||
Sbjct 836 TTGCGGTGAAGGTCTTGAAAGAATCAAAGGGTAATAATAGTGAAGACTTCATCAATGAAG 895
Query 1845 TTGCCAGCATGAGCCAAACTTCTCATGTCAACATTGTTTCACTGCTTGGATTCTGCTGTG 1904
|| | |||||||||||||| ||||||||||||||||||||||||||||||||||||| ||
Sbjct 896 TTTCTAGCATGAGCCAAACATCTCATGTCAACATTGTTTCACTGCTTGGATTCTGCTCTG 955
Query 1905 AAGGTTCAAGAAGAGCAATTATATATGAATTTTTGGGTAATGGGTCACTCGATAAATTCA 1964
||||||||| |||||| ||||||||||||||||||| |||||||| || ||||| ||||
Sbjct 956 AAGGTTCAAAAAGAGCTATTATATATGAATTTTTGGAAAATGGGTCTCTAGATAAGTTCA 1015
Query 1965 TATCGGACAA-GAGC-TCGGTGAATTTAGACTTGAAGACACTGTATGGGATCGCACTAGG 2022
| || || || || | || |||||||| ||||||| |||||||||||||||||| |||||
Sbjct 1016 TCTCAGA-AAGGA-CTTCAGTGAATTTGGACTTGACGACACTGTATGGGATCGCGCTAGG 1073
Query 2023 AGTTGCTCGTGGTCTAGAGTACTTGCACTATGGATGCAAAACGAGGATCGTGCATTTCGA 2082
||||||||||||||||||||||||||| ||||| |||||||| ||||| |||||||||||
Sbjct 1074 AGTTGCTCGTGGTCTAGAGTACTTGCATTATGGCTGCAAAACAAGGATTGTGCATTTCGA 1133
Query 2083 CATTAAACCTCAGAACGTGCTGTTAGATGATAATCTTTGCCCTAAAGTTTCTGATTTCGG 2142
|||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||
Sbjct 1134 CATTAAACCTCAGAACGTGCTGTTGGATGATAATCTTTCCCCTAAAGTTTCTGATTTCGG 1193
Query 2143 ACTTGCTAAGCTCTGCGAGAAGAAGGAGAGCATTTTATCATTGTTGGATACAAGGGGTAC 2202
||||||||| ||||||||||||||||||||||| || ||| ||||||| ||||| |||||
Sbjct 1194 ACTTGCTAAACTCTGCGAGAAGAAGGAGAGCATCTTCTCAATGTTGGACACAAGAGGTAC 1253
Query 2203 AATAGGATACATTGCACCAGAGATGATCTCTCGACTTTATGGGAGTGTTTCTCATAAGTC 2262
|||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||
Sbjct 1254 AATAGGATACATTGCACCAGAGATGATCTCTCGAGTTTATGGGAGTGTTTCTCACAAGTC 1313
Query 2263 GGATGTGTATAGCTACGGAATGTTGGTACTCGAAATGATAGGTGCAAGGAAGAAAGAACG 2322
||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||| |
Sbjct 1314 GGATGTGTATAGCTACGGAATGTTGGTCCTCGAAATGATAGGTGCAAGGAAGAAGGAAAG 1373
Query 2323 ATTTGATCAAA-ACTCT-CGATCCGA-CGGAAGCTCAATATATTTTCCAGAATGGATCTA 2379
||||||||||| | ||| | ||| || || ||||||||| ||||||||||||||||||||
Sbjct 1374 ATTTGATCAAACA-TCTAC-ATC-GAACGAAAGCTCAATGTATTTTCCAGAATGGATCTA 1430
Query 2380 TAAGGATCTTGAGAAGGCCA-ACATTAAGGATATCGAGAAGACAGAAAATGGAGGGCTTA 2438
|||||||||||||||||| | ||| | ||||||| |||||| ||| || | | |
Sbjct 1431 TAAGGATCTTGAGAAGGC-AGACAGTGAGGATATTGAGAAGG--GAA--TGC-G---T-A 1480
Query 2439 TCGAGAATGGAATCAGCAGCGAGGAAGAGGAGATAGCAAGGAAGATGACATTGGTGGGTT 2498
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1481 TCGAGAATGGAATCAGCAGCGAAGAAGAGGAGATAGCAAGGAAGATGACATTGGTGGGTT 1540
Query 2499 TGTGGTGTATTCAGTCTTCCCCATCAGATCGTCCACCGATGAACAAAGTTGTAGAGATGA 2558
||||||||||||||| |||||||||||| || ||||| ||||||| ||| ||||||||||
Sbjct 1541 TGTGGTGTATTCAGTGTTCCCCATCAGACCGCCCACCAATGAACAGAGTAGTAGAGATGA 1600
Query 2559 TGGAAGGAAGCTTGGATGCTCTTGAAGTGCCACCTAGACCTGTTTTGCAGCAAATTTCAG 2618
|||||||||| |||||| ||||||||||||||||||||||||||||||| |||||| | |
Sbjct 1601 TGGAAGGAAGTTTGGATACTCTTGAAGTGCCACCTAGACCTGTTTTGCAACAAATTCCTG 1660
Query 2619 CTTCGT-CGGT-TTCC-GACTCTTTTTGGAATTCAGAGGAGAG-TTCAA 2663
| || | | ||| || |||| ||||| ||||||||| || |||||
Sbjct 1661 -TA-GTACC-TCTTCTTGAATCTTCTTGGATTTCAGAGGA-AGGTTCAA 1705
Score = 603 bits (326), Expect = 3e-171
Identities = 574/691 (83%), Gaps = 28/691 (4%)
Strand=Plus/Plus
Query 587 GAGAGAGGGTTGAATTTGACTAATTTGGAAAGTGCTCTAAGAAAAGGTTTTGAGGTGAAG 646
|||| || |||||||||||| ||||||||||||||||||||||||| ||||||||||||
Sbjct 1 GAGAAAGAGTTGAATTTGACCCATTTGGAAAGTGCTCTAAGAAAAGGGTTTGAGGTGAAG 60
Query 647 CTGGTGATTGATGAAATACCGTGTCAACAATGTTCATCCACTCGTGGAATCTGTAGTTTC 706
||| |||| ||||| |||||||||||| ||||||| |||||||||||||||||| |||||
Sbjct 61 CTGATGATCGATGAGATACCGTGTCAAGAATGTTCGTCCACTCGTGGAATCTGTGGTTTC 120
Query 707 AACGGTACCACACAGAGTTGCTGTAACGCAACCTCACCGTCAGGAGGAGTTAGTTGCGTA 766
||| |||||||||||| |||||| |||| ||||||| | || || ||||||| |||||||
Sbjct 121 AACAGTACCACACAGATTTGCTGCAACGTAACCTCAACATCTGGTGGAGTTACTTGCGTA 180
Query 767 -C-C-ATATCAACATAGTGCTGATGAGGTTTATAGACGATGCAGTGAAAGTTTTAGCTGT 823
| | | |||||| |||||||||| | || | | ||| ||||||||| | ||||||||
Sbjct 181 CCACAACATCAACCTAGTGCTGATTTGCTTAAGAAACGCTGCAGTGAACGGTTTAGCTGC 240
Query 824 GGCAGTCAGAGAGATCTCAATTACCCCTTATGGAAACCTGGCAGAGAAGAATGTGGCCAC 883
|||| |||| |||||||| |||||||||| |||| ||||||||| ||| | |||||||||
Sbjct 241 GGCAATCAGCGAGATCTCTATTACCCCTTCTGGATACCTGGCAGGGAATACTGTGGCCAC 300
Query 884 CCCAACTTCAAGCTCAACTGTAGCGGAGGATTCGCAGAGATTAACATCGCCTCTGTTAAA 943
|| ||||||||||| | |||||| |||||||||||||||||||||||||||| || ||
Sbjct 301 CCTGACTTCAAGCTCGATTGTAGCAGAGGATTCGCAGAGATTAACATCGCCTCCGTGAAG 360
Query 944 TTCAGAATCCTAGAC-TCAT--ATCG-CTCTT-TA--ATAAGACTTGCAAGATCAGATTA 996
|||| |||| || | | | || | ||||| || |||||||| ||||||||||||||
Sbjct 361 TTCAAAATCATAAATATGAGCCAT-GACTCTTCTACCATAAGACTCGCAAGATCAGATTA 419
Query 997 TATTGGCGATT-TGTGTCCCGCAAACCCACTAACTGCGCCATTCATCGAAAAATTCCTTC 1055
||| |||||| | |||||| |||||||| ||| || |||| |||| ||||| | | |
Sbjct 420 TATCGGCGATCCT-TGTCCCCCAAACCCATTAAATGAGCCACTCATTGAAAA---CGT-C 474
Query 1056 CAGTCCTCGAACTCACTGGTGAGACAGAGCTTCTAACTTTATACTACGGCTGCCGTTTCA 1115
| | || || ||| || ||| |||||||||||||| ||||| |||| ||||| | |
Sbjct 475 C--T--TC-AATTCAGTGCTGACACAGAGCTTCTAACATTATATTACGACTGCCAACTAA 529
Query 1116 ATTCATCGGATATTCCTGCTAAC-ATTTACGTTGGAGAGCTTGGTTGTGATGAG-GGAAG 1173
| ||||||| |||| |||||| | | ||| ||||||||||||||||||||| | |||||
Sbjct 530 ACTCATCGGTTATTTCTGCTA-CTAGCTACATTGGAGAGCTTGGTTGTGATG-GTGGAAG 587
Query 1174 AAGTTACTATGTCACGAGAAACCTGTCCTCTCCTTTACTTGACAG-TTCTAGAGGCGTTT 1232
|||||||| ||| |||| |||||| || ||||||||||||||||| || |||||||||||
Sbjct 588 AAGTTACTTTGTAACGAAAAACCTCTCATCTCCTTTACTTGACAGGTT-TAGAGGCGTTT 646
Query 1233 TGAACAACTTGAGGGAAATGTGCAAAAGAAA 1263
| |||||||| |||| |||||||||||||||
Sbjct 647 TAAACAACTTAAGGGGAATGTGCAAAAGAAA 677
Score = 78.7 bits (42), Expect = 2e-13
Identities = 75/90 (83%), Gaps = 6/90 (7%)
Strand=Plus/Plus
Query 1606 AATTTTCCGAAAGAGAAAAACATCAGATGAA-GTGAGACTACAGAAGCTGA--A--GGCT 1660
|||||||||||||||||||||||||||||| | | ||| | ||||||| | | |||
Sbjct 684 AATTTTCCGAAAGAGAAAAACATCAGATGATCG-GCGACAAGAGAAGCTAATTAAAGGCC 742
Query 1661 CTGATTCCACTCAAACACTACACTTATGCG 1690
|| |||||||||||||| || |||||||||
Sbjct 743 CTTATTCCACTCAAACATTATACTTATGCG 772
> Ahg908243 jgi|Araly1|908243|Al_scaffold_0002_1324
Length=1116
Score = 1048 bits (567), Expect = 0.0
Identities = 671/722 (93%), Gaps = 4/722 (1%)
Strand=Plus/Plus
Query 50 TACCATTCCCTCAGTTCTTATTCGATCTTGTTCTTCCTCTTCTCCCTATTCCACCATCTT 109
||| || |||||||||||||||| ||||||||||||||||||||| ||||| ||||||||
Sbjct 4 TACTATCCCCTCAGTTCTTATTCAATCTTGTTCTTCCTCTTCTCCTTATTCTACCATCTT 63
Query 110 CCTTGTGCTTCAAGTAACCAAGGACTTGGGTGGTGTGAGTCTCTGTTTCAGTGTGGGAAC 169
||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||
Sbjct 64 CCTTGTGCTTCAAGTAAACAAGGACTTGGATGGTGTGAGTCTCTGTTTCAGTGTGGGAAC 123
Query 170 ATCACCGCTGATTTCCCCTTTTGGGGCGGGAATCGTCACAAACCTTGCGGTCATCCGTTG 229
||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 124 ATCACTGCTGATTTCCCCTTTTGGGGCGGGAGTCGTCACAAACCTTGCGGTCATCCGTTG 183
Query 230 CTGGAGCTTCACTGCAACAATAACAATATCACCTCTTTATACATCTCAAATCAAGAGTTC 289
|| ||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||
Sbjct 184 CTAGAGCTTCACTGCAACAATAACAACATCACCTCTTTATTCATCTCAAATCAAGAGTTC 243
Query 290 TATGTTCGTCAGA-TAAATCAAACATCTAACACTCTTACGCTTGCCAGATCAGACCTTCT 348
||||||||||| | |||||||||| ||||||| |||||||||||| |||||||||||| |
Sbjct 244 TATGTTCGTCA-ACTAAATCAAACTTCTAACATTCTTACGCTTGCTAGATCAGACCTTTT 302
Query 349 AGGTTCTTTTTGCTCCTCCTATGCATACAATACCACAACCTTGCCTCCCGAAATCTTTGA 408
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 303 AGGTTCTTTTTGCTCCTCCTCTGCATACAATACCACAACCTTGCCTCCCGAAATCTTTGA 362
Query 409 GCTTTCCCCAACTTACAAGAGCCTAACCGTATTGTACCATTGTGATCCAAAGCTTTCTTA 468
|||| |||||||||| |||||||||||||| || ||||| ||||||||||||||||||||
Sbjct 363 GCTTCCCCCAACTTATAAGAGCCTAACCGTTTTATACCACTGTGATCCAAAGCTTTCTTA 422
Query 469 CCGCTCGAGTTATACATGTCCTGCTCTAGGTACTTTTTCAATGTCTCAAAGCGTTGATTA 528
|||||||||||||||||||||||||||||||||||||||| ||||||||||| |||| ||
Sbjct 423 CCGCTCGAGTTATACATGTCCTGCTCTAGGTACTTTTTCAGTGTCTCAAAGCCTTGAGTA 482
Query 529 CCAATATTCTTGCCAAAAC-AGTTTCACAGTTAACGTTCCAACGAGTTTCCATCCAGAAG 587
||| |||||||||||||| | |||| | ||||| ||||||||||||||| |||||||||
Sbjct 483 CCAGTATTCTTGCCAAAAATA-TTTCTCGGTTAATGTTCCAACGAGTTTCAATCCAGAAG 541
Query 588 AGAGAGGGTTGAATTTGACTAATTTGGAAAGTGCTCTAAGAAAAGGTTTTGAGGTGAAGC 647
||||||||||||||||||| ||||| ||||||| |||||||||||||||||| |||||||
Sbjct 542 AGAGAGGGTTGAATTTGACCAATTTAGAAAGTGTTCTAAGAAAAGGTTTTGATGTGAAGC 601
Query 648 TGGTGATTGATGAAATACCGTGTCAACAATGTTCATCCACTCGTGGAATCTGTAGTTTCA 707
||| ||||||||| |||||||||||| |||||| ||||||||||||||||||| ||||||
Sbjct 602 TGGCGATTGATGAGATACCGTGTCAAGAATGTTTATCCACTCGTGGAATCTGTGGTTTCA 661
Query 708 ACGGTACCACACAGAGTTGCTGTAACGCAACCTCACCGTCAGGAGGAGTTAGTTGCGTAC 767
|| |||||||||||| ||||||||||| ||||||||| || || ||||||| ||||||||
Sbjct 662 ACAGTACCACACAGATTTGCTGTAACGTAACCTCACCATCTGGCGGAGTTACTTGCGTAC 721
Query 768 CA 769
||
Sbjct 722 CA 723
Score = 403 bits (218), Expect = 3e-111
Identities = 310/353 (88%), Gaps = 11/353 (3%)
Strand=Plus/Plus
Query 1151 GAGCTTGGTTGTGATGAGGGAAGAAGTTACTATGTCACGAGAAACCTGTCCTCTCCTTTA 1210
||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||
Sbjct 739 GAGCTTGGTTGTGATGAGGGAAGAAGTTACTATGTGACGAGAAACCTCTCCTCTCCTTTA 798
Query 1211 CTTGACA-GTTCTAGAGGCGTTTTGAACAACTTGAGGGAAATGTGCAAAAGAAACGTCAG 1269
||||||| || |||||||| || | |||||||| ||||||||||||||||||||||||||
Sbjct 799 CTTGACACGT-CTAGAGGCCTTCTAAACAACTTTAGGGAAATGTGCAAAAGAAACGTCAG 857
Query 1270 TGTTCCTGCGTCTGGACCCGCGTTATTCGATCTCCAGACAAGGCCAAATCAAGATAATCT 1329
||||||||||||||||| ||||||| |||||| |||| ||| ||||||| |||||||||
Sbjct 858 TGTTCCTGCGTCTGGACAAGCGTTATACGATCTGCAGAAAAGTCCAAATCCAGATAATCT 917
Query 1330 GAAGATGGCTCTTGATCAAGGTTTT-CGGATGTTGATTA-CATCAGATTGT-GAGAGGTG 1386
||||||||||||||| ||||||||| || || | ||| | |||||||| || |||||
Sbjct 918 GAAGATGGCTCTTGAACAAGGTTTTACGCTTGAAG-TTAAC-TCAGATTGCCGA-AGGTG 974
Query 1387 CCGAGGTTCTGGCGGTGCTTGTGGATATAATCAGACTTCAAGTGGGTTCGGGTGCTATTG 1446
|| | ||| || | ||||||||||||||||||||||||||| ||||| |||||||||
Sbjct 975 CCTACACTCTTACGATACTTGTGGATATAATCAGACTTCAAGTGAGTTCGTGTGCTATTG 1034
Query 1447 TAAAGATGGTAAATGCGGATACGAATACGATGATGGATTTTTTCGTCGGCATC 1499
|||||||||||||||| || |||| | ||||| |||||||||||||||||||
Sbjct 1035 TAAAGATGGTAAATGCAGAAACGA-T--GATGAAGGATTTTTTCGTCGGCATC 1084
> Ahg475793 jgi|Araly1|475793|fgenesh2_kg.2__923__AT1G66980.1
Length=3307
Score = 749 bits (405), Expect = 0.0
Identities = 822/1017 (81%), Gaps = 54/1017 (5%)
Strand=Plus/Plus
Query 1608 TTT-TCCGAAAGAGAAAAACATCAGATGAAGTGAGACTACAGAAGCTGAAGGCTCTGATT 1666
||| ||||||||||| ||||| | | | |||||| |||||||||||||||||| |||
Sbjct 2230 TTTCTCCGAAAGAGAGAAACA-C--A-G--CTGAGACAACAGAAGCTGAAGGCTCTTATT 2283
Query 1667 CCACTCAAACACTACACTTATGCGGAAGTGAAGAAAATGACAAAGTCATTCACGGAGGTG 1726
||||| ||||||| |||||||| | ||||||| ||| ||||||||||| |||| |
Sbjct 2284 CCACTGGAACACTATACTTATGCACAGGTGAAGAGAATTACAAAGTCATTTGCGGAAATT 2343
Query 1727 GTTGGGAGAGGCGGGTTTGGAATTGTTTATAGCGGAACCCTTAGTGATAGCAGTATGGTT 1786
|||||||||||||| |||||||||||||||| ||||| ||||||||| || || |||||
Sbjct 2344 GTTGGGAGAGGCGGATTTGGAATTGTTTATAAAGGAACACTTAGTGATGGCCGTGTGGTT 2403
Query 1787 GCGGTAAAGGTCTTGAAAGATTCAAAGGGTACTGATGGTGAAGACTTCATTAATGAAGTT 1846
||||| |||||||||||||| ||||| |||| |||||||||||||||| ||||| |||
Sbjct 2404 GCGGTTAAGGTCTTGAAAGACTCAAAAGGTA---ATGGTGAAGACTTCATGAATGAGGTT 2460
Query 1847 GCCAGCATGAGCCA-AACTTCTCATGTCAACATTGTTTCAC-TGCTTGGATTCTGCTGTG 1904
|| |||||||| || |||||||||| ||||||||||||| | ||||||| ||||||| |
Sbjct 2461 GCGAGCATGAG-CAGAACTTCTCATCTCAACATTGTTTC-CTTGCTTGGTTTCTGCTCAG 2518
Query 1905 AAGGTT-CAAGAAGAGCAATTATATATGAATTTTTGGGTAATGGGTCACTCGATAAATTC 1963
|||||| ||| ||| |||||||||||||| ||||||| ||||||||||| ||||| ||
Sbjct 2519 AAGGTTCCAA-AAGGGCAATTATATATGAGTTTTTGGAAAATGGGTCACTTGATAAGTTT 2577
Query 1964 ATATC-GGACAAGAGCTCGGTGAATTTAGACTT-GAAGACACTGTATGGGATCGCACTAG 2021
|| || || ||||| ||| ||| || | || || || |||||| ||| | || || ||||
Sbjct 2578 ATCTCAGG-CAAGACCTCCGTGGATATGGA-TTGGACGACACTATATAGAATTGCGCTAG 2635
Query 2022 GAGTTGCTCGTGGTCTAGAGTACTTGCACTATGGATGCAAAACGAGGATCGTGCATTTCG 2081
||||||| |||||| |||||||||||||| || | |||||||| ||||| || ||||| |
Sbjct 2636 GAGTTGCCCGTGGTTTAGAGTACTTGCACCATAGCTGCAAAACAAGGATTGTACATTTTG 2695
Query 2082 ACATTAAACCTCAGAACGTGCTGTTAGATGATAATCTTTG-CCCTAAAGTTTCTGA-TTT 2139
|||||||||| || || || || |||||||| ||| |||| ||| |||||||| || |||
Sbjct 2696 ACATTAAACCACAAAATGTACTCTTAGATGACAATTTTTGTCCC-AAAGTTTCGGACTTT 2754
Query 2140 CGGACTTGCTAAGCTCTGCGAGAAGAAGGAGAGCATTTTATCAT-TGTTGGATACAAGGG 2198
|| || ||||||||||| |||||||| ||||||||||| || | || |||| ||||| |
Sbjct 2755 -GGTCTCGCTAAGCTCTGTGAGAAGAAAGAGAGCATTTTTTC-TATGCTGGACACAAGAG 2812
Query 2199 GTACAATAGGATACATTGCACCAGAGATGATCTCTCGACTTTATGGGAGTGTTTCTCATA 2258
|||| ||||| |||||||||||||||||||| || || ||||||||| ||| || || |
Sbjct 2813 GTACCATAGGGTACATTGCACCAGAGATGATTTCGAGAGTTTATGGGAATGTGTCGCACA 2872
Query 2259 AGTCGGATGTGTATAGCTACGGAATGTTGGTACTCGAAATGATAGGTGCAAGGAAGAAAG 2318
| || |||||||||||||| |||||||| || || || || || ||||||||||| ||||
Sbjct 2873 AATCAGATGTGTATAGCTATGGAATGTTAGTCCTTGAGATAATTGGTGCAAGGAACAAAG 2932
Query 2319 AACGATTTGATCAAAACTCTCGATCCGACGGAAGCTCAATATATTTTCCAGAATGGATCT 2378
|| | | ||||| ||||| || || ||| ||||| || ||||| |||||| | |
Sbjct 2933 AAAAAGCTAATCAAGCCTCTCCTTCTAACACAAGTTCAATGTACTTTCCTGAATGGGTAT 2992
Query 2379 ATAAGGATCTTGAGAAGGCCAACATTAAGGATATCGAGAAGACAGAAAATGGAGGGCTTA 2438
||| ||||||| ||| | | || | | || |||| | | || || || |
Sbjct 2993 ATAGGGATCTT--GAA--TC-A-GGCAA-G-T-CCG-GAAG---GCATATTGA-GG---A 3035
Query 2439 TCGAGAATGGAATCAGCAGCG-AGGAAGAGGAGATAGCAAGGAAGATGACATTGGTGGGT 2497
| | |||| || || | || | ||||| ||| | |||| |||||||||||||||||||
Sbjct 3036 T-G-GAAT-TAA-CA--A-CGTA-GAAGATGAGCTTGCAAAGAAGATGACATTGGTGGGT 3087
Query 2498 TTGTGGTGTATTCAGTCTTC-CCCATCAGATCGTCCACCGATGAACAAAGTTGTAGAGAT 2556
||||||||||||||| |||| || | ||||| ||| ||||||||||||||||||||||
Sbjct 3088 TTGTGGTGTATTCAGCCTTCTCCGGT-GGATCGCCCAGCGATGAACAAAGTTGTAGAGAT 3146
Query 2557 GATGGAAGGAAGCTTGGATGCTCTTGAAGTGCCACCTAGACCTGTTTTGCAGCAAAT 2613
|||||||||||||||||| ||||||||||| || ||||| |||||||||||||||||
Sbjct 3147 GATGGAAGGAAGCTTGGAAGCTCTTGAAGTCCCTCCTAGGCCTGTTTTGCAGCAAAT 3203
> Ahg925915 jgi|Araly1|925915|scaffold_201476.1
Length=1887
Score = 641 bits (347), Expect = 0.0
Identities = 810/1024 (79%), Gaps = 69/1024 (7%)
Strand=Plus/Plus
Query 1692 AAGTGAAGAAAATGACAAAGTCATTCACGGAGGTGGTTGGGAGAGGCGGGTTTGGAATTG 1751
||||||||| ||||||||| |||||| |||| ||||| ||| ||||||| || |||| ||
Sbjct 909 AAGTGAAGAGAATGACAAACTCATTCGCGGAAGTGGTCGGGCGAGGCGGATTCGGAACTG 968
Query 1752 TTTATAGCGGAACCCTTAGTGATAGCAGTATGGTTGCGGTAAAGGTCTTGAAAGA-TTCA 1810
| ||||| ||||||||| |||| || |||||||||| || |||||||||||||| || |
Sbjct 969 TCTATAGAGGAACCCTTTCTGATGGCCGTATGGTTGCAGTGAAGGTCTTGAAAGACTT-A 1027
Query 1811 AAGGGTACTGATGGTGAAGACTTCATTAATGAAGTTGCCAGCATGAGCCAAACTTCTCAT 1870
||||||| | |||||||||||||||| ||||||||||| |||||||||||||||||||||
Sbjct 1028 AAGGGTAATAATGGTGAAGACTTCATCAATGAAGTTGCAAGCATGAGCCAAACTTCTCAT 1087
Query 1871 GTCAACATTGTTTCACT-GCTT-GGATTCTGCTGTGAAGGTTC-AAGAAGAGCAATTATA 1927
|||||||||||| | || | || ||||| || | ||||||| |||| ||||||||||
Sbjct 1088 GTCAACATTGTTAC-CTTG-TTAGGATTTTGTTCCGAAGGTTATAAGA-GAGCAATTATT 1144
Query 1928 TATGAATTTTTGGGTAATGGGTCACTCGATAAATTCATATCG-GACAAGA-GCTCGGTGA 1985
|| |||||| ||| |||||||| || ||||| ||||| || | ||||| | || |
Sbjct 1145 TACGAATTTATGGAAAATGGGTCTCTTGATAAGTTCATCTCAAG-CAAGAAG-TCAACAA 1202
Query 1986 ATTTAGACTTGAAG-ACACTGTATGGGATCGCACTAGGAGTTGCTCGTGGTCTAGAGTAC 2044
|| | |||| || | | ||| |||||||||||| |||| |||||||||||||||||||||
Sbjct 1203 ATATGGACTGGATGGA-ACTATATGGGATCGCATTAGGCGTTGCTCGTGGTCTAGAGTAC 1261
Query 2045 TTGCACTATGGATGCAAAACGAGGATCGTGCATTTCGACATTAAACCTCAGAACGTGCTG 2104
|| ||| |||| |||| ||| || || || ||||||||||| ||||| ||||| || ||
Sbjct 1262 TTACACCATGGCTGCAGAACAAGAATTGTACATTTCGACATAAAACCACAGAATGTACTC 1321
Query 2105 TTAGATGATAATCTTTGCCCTAAAGTTTCTGA-TTTCGGACTTGCTAAGCTCTGCGAGAA 2163
|||||||| ||||||| ||| |||||||| || ||| || ||||||||||| |||||||
Sbjct 1322 TTAGATGACAATCTTTCCCCGAAAGTTTCAGACTTT-GGCCTTGCTAAGCTATGCGAGAG 1380
Query 2164 GAAGGAGAGCATTTTATCATTGTTGGATACAAGGGGTACAATAGGATACATTGCACCAGA 2223
||| || || || || ||| | |||| ||||| || || ||||| ||||||||||| ||
Sbjct 1381 GAAAGAAAGTATCTTGTCACTACTGGACACAAGAGGAACGATAGGGTACATTGCACCTGA 1440
Query 2224 -GATGATCTCTCGACTTTATGGGAGTGTTTCTCATAAGTCGGATGTGTATAGCTACGGAA 2282
| || | || || | || || || || || || ||||| |||||||||||||| ||||
Sbjct 1441 AG-TGTTTTCAAGAGTGTACGGTAGAGTCTCCCACAAGTCAGATGTGTATAGCTATGGAA 1499
Query 2283 TGTTGGTACTCGAAATGATAGGTGCAAGGAAGAAAGAACGATTTGATC-AA--AACT-C- 2337
||||| | ||||| || ||||| || ||||| ||| | | || | | || |||| |
Sbjct 1500 TGTTGATTCTCGATATAATAGGAGCTAGGAACAAA-A-C-ATCA-ACCGAAGGAACTACA 1555
Query 2338 TCGATCCGACGGAAGCTCAATATATTTTCCAGAATGGATCTATAAGGATCTTGAGAAGGC 2397
|| | | || ||||||||| || ||||| |||||||| |||||||||||||||||||
Sbjct 1556 TCTAGC--AC--AAGCTCAATGTACTTTCCCGAATGGATATATAAGGATCTTGAGAAGG- 1610
Query 2398 CAACATTAAGGATATCGAGAAGACAGAAAATGGAGGGCTTATCGAGAATGGAATCAGCAG 2457
| | || || | |||| |||||||||||||| |||| || ||
Sbjct 1611 ---------G-A----GA-----CA-A---TGGAAGGCTTATCGAGAATAGAATAAGTAG 1647
Query 2458 CGAGGAAGAGGAGATAGCAAGGAAGATGACATTGGTGGGTTTGTGGTGTATTCAGTCTTC 2517
||| ||||| |||||||||| ||||||||| ||||| |||||||||||||||||| |||
Sbjct 1648 CGAAGAAGATGAGATAGCAAAGAAGATGACGTTGGTAGGTTTGTGGTGTATTCAGCCTTG 1707
Query 2518 CCCATCAGATCGTCCACCGATGAACAAAGTTGTAGAGATGATGGAAGGAAGCTTGGATGC 2577
||||||||||| ||| ||||||||| ||| ||||||||||||||||||| | |||||||
Sbjct 1708 GCCATCAGATCGCCCAGCGATGAACAGAGTGGTAGAGATGATGGAAGGAAACCTGGATGC 1767
Query 2578 TCTTGAAGTGCCACCTAGACCTGTTTTGCAGCAAAT-TTCAGCT--T-CGTCGGTTTCCG 2633
|||||||||||| ||||||||||||||| | || | ||| | | | | || | || |
Sbjct 1768 TCTTGAAGTGCCTCCTAGACCTGTTTTG--G-AA-TGTTCCG-TAGTGCCTCA-TCTC-G 1820
Query 2634 ACTCTTTTTGGAATTCAGAGGAGAGTTCAAG-TGCCTCTGATATACTGGTTTTCTCCACA 2692
| |||| |||| ||||||||| | ||||| | ||||||| ||| || ||||||||| |
Sbjct 1821 ATTCTTCCTGGATTTCAGAGGAAAATTCAATCT-CCTCTGAGATA-TGATTTTCTCCATA 1878
Query 2693 AACT 2696
||||
Sbjct 1879 AACT 1882
> Ahg925925 jgi|Araly1|925925|scaffold_201486.1
Length=790
Score = 435 bits (235), Expect = 1e-120
Identities = 529/666 (79%), Gaps = 39/666 (6%)
Strand=Plus/Plus
Query 35 AAACAAATCATGTACTACCATTCCCTCAGTTCTTATTC-GATCTTGTTCTTCCTCTTCTC 93
||||||| ||||||||| | |||| || ||||| || | |||||||||||||| ||
Sbjct 12 AAACAAACCATGTACTATC--TCCC-CACTTCTT-GTCTGGTCTTGTTCTTCCTCGCCTT 67
Query 94 CCTATTCCACCATCTTCCTTGTGCTTCAAGTAACCAAGGA-CTTGGGTGGTGTGAGTCTC 152
| ||||||||||||||||||||||||||||||| ||||| |||||| |||||||| |||
Sbjct 68 CTTATTCCACCATCTTCCTTGTGCTTCAAGTAAA-AAGGAACTTGGGGGGTGTGAGACTC 126
Query 153 TGTTTCAGTGTGGGAACATCACCGCTGATTTCCCCTTT-TGGGG-CGGGAATCGTCACAA 210
|||| |||||||||||| ||||||||| |||||| ||| | ||| | | |||||||||||
Sbjct 127 TGTTCCAGTGTGGGAACGTCACCGCTGGTTTCCC-TTTCTCGGGTCAG-AATCGTCACAA 184
Query 211 ACCTTGCGGTCATCCGTTGCTGGAGCTTCACTGCAACAATAACAATATCACCTCTTTATA 270
|| |||||||||||| || || |||||| ||||| |||||||| | |||| ||||||
Sbjct 185 ACTTTGCGGTCATCCATTTCTCGAGCTTTACTGCGTCAATAACA-T--CACCACTTTATT 241
Query 271 CATCTCAAATCAAGAGTTCTATGTTCGTCAGA-TAAATCAAACATCTAACACTCTTACGC 329
|||||||||| |||||||| |||||| | | | |||| ||||||||||||||| |||| |
Sbjct 242 CATCTCAAATAAAGAGTTCCATGTTC-TAAAAATAAACCAAACATCTAACACTATTACAC 300
Query 330 TTGCCAGATCAGACCTTCTAGGTTCTTTTTGCTCCTCCTATGCAT--ACAATACCACAAC 387
|||| |||| |||||| ||||||| ||||||||||| || ||| || | || |||
Sbjct 301 TTGCTAGATTTGACCTTTTAGGTTCCTTTTGCTCCTC-TA--CATTTACCA-ACGT-AAC 355
Query 388 CTTGCCTCCCGAAATCTTT-GAGCTTTCCCCAACTTACAAGAGCCTAACCGTATTGTACC 446
||| ||||| ||| | ||| || |||| ||||| ||||||||| | || || || |||
Sbjct 356 CTTACCTCCAGAAGT-TTTCGAAATTTCACCAACCTACAAGAGCGTCACTGTCTTCCACC 414
Query 447 -ATTGTGATCCAAAGCTTTCT-TACCGCTCGAGTTATACATGTCCTGCTCTAGGTACTTT 504
|| |||| || | |||| |||| |||||||||| |||||||| ||||| |||
Sbjct 415 TAT-GTGACCCTTGG-TTTCCATACCATTCGAGTTATAAATGTCCTGAGATAGGT-CTTA 471
Query 505 T-TCAATGTCTCAAAGCGTTGAT--TACCAATATTCTTGCCAAAACAGTTTCACAGTTAA 561
| ||||||||| ||| | |||| || || | || ||| | |||||||| || ||
Sbjct 472 TCTCAATGTCTGAAAACCTTGAACATAATAACAA-CT-GCCGTGAGAGTTTCACTGTGAA 529
Query 562 CGTTCCAACGAGTTTCCATCCAGAAGAGAGAGGGTTGAATTTGACTA-ATTTGGAAAGTG 620
| |||| || ||||| |||||||||| ||| |||||||||||| | ||||||||||||
Sbjct 530 CCTTCCTACAAGTTTTGTTCCAGAAGAGGGAGTGTTGAATTTGAC-ACATTTGGAAAGTG 588
Query 621 CTCTAAGAAAAGGTTTTGAGGTGAAGCTGGTGATTGATGAAA-TACCGTGTCAACAATGT 679
|||||||| |||| |||||||||||| || ||||||| ||| | | |||||| |||||
Sbjct 589 CTCTAAGAGAAGGATTTGAGGTGAAGGTGAAGATTGATAAAAATGCA-TGTCAAGAATGT 647
Query 680 TCATCC 685
| ||||
Sbjct 648 TTATCC 653
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 106805046980
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5