BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G67025.1 Length=1274 Score E Sequences producing significant alignments: (Bits) Value Ahg475796 jgi|Araly1|475796|fgenesh2_kg.2__926__AT1G67025.1 859 0.0 > Ahg475796 jgi|Araly1|475796|fgenesh2_kg.2__926__AT1G67025.1 Length=627 Score = 859 bits (465), Expect = 0.0 Identities = 578/632 (91%), Gaps = 10/632 (2%) Strand=Plus/Plus Query 291 ATGAGTGATCAAATTATCAAGCTAGAAGGTCCGAGGCTGTTGCCAAACGTGACGTATCCT 350 |||||||||||||| ||||| ||||||||||||| ||||||||||||||| || |||||| Sbjct 1 ATGAGTGATCAAATCATCAAACTAGAAGGTCCGACGCTGTTGCCAAACGTCACATATCCT 60 Query 351 TTCTGGGGAGTCAATAAACCCAATTATTGCGGCCAAACAGAGTTTCAACTCACTTGCAAG 410 ||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||| Sbjct 61 TTCTGGGGAGTCAATAAACCCAATTATTGCGGCCAAACAGAATTTCAACTCTCTTGCAAG 120 Query 411 AACAACCAAAACCTAACTTTAGTTCTCACAAACCTTTCTCTTCAAGTAATCTCTTTTGAT 470 ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 121 AACAACCAAAACCTAACTTTAGTTCTCACAAACCTCTCTCTTCAAGTAATCTCTTTTGAT 180 Query 471 TTGGAGAATCAAACTTTAACCGTTGTCGATGAGAGTTTATTCGAGGGTCGATGCCCAAGC 530 ||||||||||||||||||||||||| |||||||||||| ||||||||| ||||||||||| Sbjct 181 TTGGAGAATCAAACTTTAACCGTTGCCGATGAGAGTTTGTTCGAGGGTAGATGCCCAAGC 240 Query 531 ATGTCCCTGAACTTCACCGGGGCCAATCAGTTCACAATCGCTCCTACAGTGGA-GAAGAT 589 || |||||||||||||||||| |||||||||||||||||||||||||| | | |||||| Sbjct 241 ATATCCCTGAACTTCACCGGGACCAATCAGTTCACAATCGCTCCTACA-TCCAAGAAGAT 299 Query 590 TGACCTATTCATTTGTCCTGCTTCTCAGATGGTAAGTCCGCTTTCGGCGTTTACTTGCAG 649 |||||||||||||||||||||| || ||||||||| |||||| || ||||||||||||| Sbjct 300 TGACCTATTCATTTGTCCTGCTCCTGAGATGGTAAATCCGCTCTCTTCGTTTACTTGCAG 359 Query 650 AAAAAGCAACGGGGAAATTGTAACATATTACGCGTTTAAGCCCTCAGATTCTGTTACGGA 709 ||||||||||||||| || |||||||||||| |||||||| ||||||||||||||||||| Sbjct 360 AAAAAGCAACGGGGATATGGTAACATATTACACGTTTAAGACCTCAGATTCTGTTACGGA 419 Query 710 CTGCGTAAAGATGGGAGAA-TATCCAGTTCTTAGTTCTCTTCTGGATGAGTTTCAGCGGT 768 ||||||||| |||||||| | |||||||||||||||| || ||||||| |||||||||| Sbjct 420 GTGCGTAAAGTTGGGAGAAGT-TCCAGTTCTTAGTTCTGTTTTGGATGATTTTCAGCGGT 478 Query 769 CAAGGCTTAA-ATTGAAAG-AAGCTTTGGTTAAGGGGTTTGATCTAAGGTTCAACATCAG 826 ||||||| || ||| | || ||||||||||||||||||||||||| |||| ||||||||| Sbjct 479 CAAGGCT-AACATT-AGAGGAAGCTTTGGTTAAGGGGTTTGATCTTAGGTACAACATCAG 536 Query 827 AGACGATCA-ATCTTGCAGAGGTTGTTCAAATAGTCATGGAGTATGCGGTTCCGAGCCAG 885 ||| | | | ||||||||||||||||| ||||| |||||| |||||||||||| ||| Sbjct 537 AGATGGT-AGATCTTGCAGAGGTTGTTTGGATAGTGGTGGAGTCTGCGGTTCCGAGTCAG 595 Query 886 TATCTGGCAGTTTTCAGTGTCTCTGCTATGAC 917 |||||||||||||||| |||||||| |||||| Sbjct 596 TATCTGGCAGTTTTCACTGTCTCTGTTATGAC 627 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 47615523333 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5