BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G67025.1
Length=1274
Score E
Sequences producing significant alignments: (Bits) Value
Ahg475796 jgi|Araly1|475796|fgenesh2_kg.2__926__AT1G67025.1 859 0.0
> Ahg475796 jgi|Araly1|475796|fgenesh2_kg.2__926__AT1G67025.1
Length=627
Score = 859 bits (465), Expect = 0.0
Identities = 578/632 (91%), Gaps = 10/632 (2%)
Strand=Plus/Plus
Query 291 ATGAGTGATCAAATTATCAAGCTAGAAGGTCCGAGGCTGTTGCCAAACGTGACGTATCCT 350
|||||||||||||| ||||| ||||||||||||| ||||||||||||||| || ||||||
Sbjct 1 ATGAGTGATCAAATCATCAAACTAGAAGGTCCGACGCTGTTGCCAAACGTCACATATCCT 60
Query 351 TTCTGGGGAGTCAATAAACCCAATTATTGCGGCCAAACAGAGTTTCAACTCACTTGCAAG 410
||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||
Sbjct 61 TTCTGGGGAGTCAATAAACCCAATTATTGCGGCCAAACAGAATTTCAACTCTCTTGCAAG 120
Query 411 AACAACCAAAACCTAACTTTAGTTCTCACAAACCTTTCTCTTCAAGTAATCTCTTTTGAT 470
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 121 AACAACCAAAACCTAACTTTAGTTCTCACAAACCTCTCTCTTCAAGTAATCTCTTTTGAT 180
Query 471 TTGGAGAATCAAACTTTAACCGTTGTCGATGAGAGTTTATTCGAGGGTCGATGCCCAAGC 530
||||||||||||||||||||||||| |||||||||||| ||||||||| |||||||||||
Sbjct 181 TTGGAGAATCAAACTTTAACCGTTGCCGATGAGAGTTTGTTCGAGGGTAGATGCCCAAGC 240
Query 531 ATGTCCCTGAACTTCACCGGGGCCAATCAGTTCACAATCGCTCCTACAGTGGA-GAAGAT 589
|| |||||||||||||||||| |||||||||||||||||||||||||| | | ||||||
Sbjct 241 ATATCCCTGAACTTCACCGGGACCAATCAGTTCACAATCGCTCCTACA-TCCAAGAAGAT 299
Query 590 TGACCTATTCATTTGTCCTGCTTCTCAGATGGTAAGTCCGCTTTCGGCGTTTACTTGCAG 649
|||||||||||||||||||||| || ||||||||| |||||| || |||||||||||||
Sbjct 300 TGACCTATTCATTTGTCCTGCTCCTGAGATGGTAAATCCGCTCTCTTCGTTTACTTGCAG 359
Query 650 AAAAAGCAACGGGGAAATTGTAACATATTACGCGTTTAAGCCCTCAGATTCTGTTACGGA 709
||||||||||||||| || |||||||||||| |||||||| |||||||||||||||||||
Sbjct 360 AAAAAGCAACGGGGATATGGTAACATATTACACGTTTAAGACCTCAGATTCTGTTACGGA 419
Query 710 CTGCGTAAAGATGGGAGAA-TATCCAGTTCTTAGTTCTCTTCTGGATGAGTTTCAGCGGT 768
||||||||| |||||||| | |||||||||||||||| || ||||||| ||||||||||
Sbjct 420 GTGCGTAAAGTTGGGAGAAGT-TCCAGTTCTTAGTTCTGTTTTGGATGATTTTCAGCGGT 478
Query 769 CAAGGCTTAA-ATTGAAAG-AAGCTTTGGTTAAGGGGTTTGATCTAAGGTTCAACATCAG 826
||||||| || ||| | || ||||||||||||||||||||||||| |||| |||||||||
Sbjct 479 CAAGGCT-AACATT-AGAGGAAGCTTTGGTTAAGGGGTTTGATCTTAGGTACAACATCAG 536
Query 827 AGACGATCA-ATCTTGCAGAGGTTGTTCAAATAGTCATGGAGTATGCGGTTCCGAGCCAG 885
||| | | | ||||||||||||||||| ||||| |||||| |||||||||||| |||
Sbjct 537 AGATGGT-AGATCTTGCAGAGGTTGTTTGGATAGTGGTGGAGTCTGCGGTTCCGAGTCAG 595
Query 886 TATCTGGCAGTTTTCAGTGTCTCTGCTATGAC 917
|||||||||||||||| |||||||| ||||||
Sbjct 596 TATCTGGCAGTTTTCACTGTCTCTGTTATGAC 627
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 47615523333
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5