BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G67030.1 Length=970 Score E Sequences producing significant alignments: (Bits) Value Ahg475797 jgi|Araly1|475797|fgenesh2_kg.2__927__AT1G67030.1 1253 0.0 Ahg926113 jgi|Araly1|926113|scaffold_201674.1 152 4e-36 > Ahg475797 jgi|Araly1|475797|fgenesh2_kg.2__927__AT1G67030.1 Length=929 Score = 1253 bits (678), Expect = 0.0 Identities = 875/963 (91%), Gaps = 42/963 (4%) Strand=Plus/Plus Query 1 ATTTTAAGTCTCTAATCTCATCTTTCCATTTTCAAGAAGACTTTTAAATCTGtctctctc 60 ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1 ATTTTAAGTCTTTAATCTCATCTTTCCATTTTCAAGAAGACTTTTAAATCTGTCTCTCTC 60 Query 61 tctctctTTGTAAATATACATATATAGATAAGCTCACATATATGGCGACTGAAACATCTT 120 |||||||||| ||| | | |||||||||||||| |||||||||| Sbjct 61 TCTCTCTTTG------TAC-----------A--T-ACATATATGGCGACAGAAACATCTT 100 Query 121 CTTTGAAGCTCTTCGGTATAAACCTACTTGAAACGACGTCGG-TTCAAAACCAGTCATCG 179 |||||||||||||||||||||||||||||||||||||||||| | | ||||| ||| || Sbjct 101 CTTTGAAGCTCTTCGGTATAAACCTACTTGAAACGACGTCGGATAC-AAACCGGTCGTCC 159 Query 180 GAACCAAGACCCGGATCCGGATCAGGATCCGAGTCACGTAAGTACGAGTGTCAATACTGT 239 ||||||||| ||||| ||||| | |||||||||||||||||||||||||||||||| ||| Sbjct 160 GAACCAAGATCCGGACCCGGAACTGGATCCGAGTCACGTAAGTACGAGTGTCAATATTGT 219 Query 240 TGTAGAGAGTTTGCTAACTCTCAAGCTCTTGGTGGTCACCAAAACGCTCACAAGAAAGAG 299 |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 220 TGTAGAGAGTTTGCGAACTCTCAAGCTCTTGGTGGTCACCAAAACGCTCACAAGAAAGAG 279 Query 300 CGTCAGCTTCTTAAACGTGCACAGATGTTAGCTACTCGTGGTTTGCCACGTCATCATAAT 359 |||||||||||||||||||||||||||||||||||||| || ||| |||||||||||||| Sbjct 280 CGTCAGCTTCTTAAACGTGCACAGATGTTAGCTACTCGCGGCTTGACACGTCATCATAAT 339 Query 360 TTTCACCCTCATACCAATCCGCTTCTCTCCGCCTTCGCGCCGCTGCCTCACCTCCTCTCT 419 |||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||| Sbjct 340 TTTCACCCTCATACCAATCCGCTTCTTTCCGCCTTCGCACCGCTGCCTCACCTCCTCTCT 399 Query 420 CAGCCGCATCCTCCGCCGCATATGATGCTCTCTCCTTCTTCTTCGAGTTCTAAGTGGCTT 479 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 400 CAGCCGCATCCTCCGCCGCATATGATGCTCTCTCCTTCTTCTTCGAGTTCTAAGTGGCTT 459 Query 480 TACGGTGAACACATGTCGTCACAAAACGCCGTTGGGTACTTTCATGGTGGAAGGGGACTT 539 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 460 TACGGTGAACACATGTCGTCACAAAACGCCGTTGGGTACTTTCATGGTGGAAGGGGACTT 519 Query 540 TACGGAGGTGGCATGGAGTCTATGGCCGGAGAAGTAAAGACTCATGGTGGTTCTTTGCCG 599 || |||||||| |||||||||||||| | || || ||| |||| ||||||||||||||| Sbjct 520 TATGGAGGTGGTATGGAGTCTATGGCAGAAGGGGTTAAGGCTCACGGTGGTTCTTTGCCG 579 Query 600 GAGATGAGGAGGTTCGCCGGAGATAGTGATCGGAGTAGCGGAATTAAGTTAGAGAATGGT 659 ||||||||||||||||||||||| |||||||||||||||||| | ||||||||||||||| Sbjct 580 GAGATGAGGAGGTTCGCCGGAGAGAGTGATCGGAGTAGCGGAGTCAAGTTAGAGAATGGT 639 Query 660 ATTGGGCTGGACCTCCATTTAAGCCTTGGGCCATGAATGATTATAATTTTGGCCCAGTAA 719 ||||||||||||||||||||||| ||||||||||||||||| | ||||||||||||||| Sbjct 640 ATTGGGCTGGACCTCCATTTAAGTATTGGGCCATGAATGATTTTTATTTTGGCCCAGTAA 699 Query 720 AGATCTGTAAAATACTACTAGGATTTCATTTTTATAGAGTATGttttttt-----CCTTA 774 | ||||||||||||||||| |||| |||||| | |||||| | ||||||| ||||| Sbjct 700 AAATCTGTAAAATACTACTCGGATCTCATTTATCTAGAGTGTTTTTTTTTTTTTTCCTTA 759 Query 775 ATTTCGGTTGAAATTGGTGAATATTTTTATCTCTTACTT-ACCAAATCTCATATTTCTAT 833 ||||| ||||||||| |||| ||||||| | |||||||| ||||||||| ||||| |||| Sbjct 760 ATTTCAGTTGAAATTAGTGATTATTTTT-T-TCTTACTTTACCAAATCTTATATT-CTAT 816 Query 834 GTATGCGTTTGCTTTCACtttttttttttATATAATTCTTCTTGTAAAAAATGCAATGTG 893 |||||||||||||||||| |||||| |||| | ||||||||||||| ||||||||| Sbjct 817 GTATGCGTTTGCTTTCACCTTTTTT----ATAT--T-CTTCTTGTAAAAA-TGCAATGTG 868 Query 894 AGTTTTCTTCCCTATCATTCTGTCAAGCTTTGGTTCAATTATTTAGTAATCGAATAAT-A 952 | |||||||||||||||||||||||| ||||||||||||||||||||||||||| ||| | Sbjct 869 AATTTTCTTCCCTATCATTCTGTCAA-CTTTGGTTCAATTATTTAGTAATCGAA-AATTA 926 Query 953 TAG 955 ||| Sbjct 927 TAG 929 > Ahg926113 jgi|Araly1|926113|scaffold_201674.1 Length=776 Score = 152 bits (82), Expect = 4e-36 Identities = 101/110 (92%), Gaps = 2/110 (2%) Strand=Plus/Plus Query 215 ACGTAAGTACGAGTGTCAATACTGTTGTAGAGAGTTTGCTAACTCTCAAGCTCTT-GGTG 273 |||||||||||||||||| ||||||||||||||||||| |||||| ||||| ||| |||| Sbjct 230 ACGTAAGTACGAGTGTCAGTACTGTTGTAGAGAGTTTGGTAACTCACAAGC-CTTAGGTG 288 Query 274 GTCACCAAAACGCTCACAAGAAAGAGCGTCAGCTTCTTAAACGTGCACAG 323 ||||||||||||||||||||||||||||||| | ||||||||||| ||| Sbjct 289 GTCACCAAAACGCTCACAAGAAAGAGCGTCAACAGCTTAAACGTGCTCAG 338 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 36026156565 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5