BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G67030.1
Length=970
Score E
Sequences producing significant alignments: (Bits) Value
Ahg475797 jgi|Araly1|475797|fgenesh2_kg.2__927__AT1G67030.1 1253 0.0
Ahg926113 jgi|Araly1|926113|scaffold_201674.1 152 4e-36
> Ahg475797 jgi|Araly1|475797|fgenesh2_kg.2__927__AT1G67030.1
Length=929
Score = 1253 bits (678), Expect = 0.0
Identities = 875/963 (91%), Gaps = 42/963 (4%)
Strand=Plus/Plus
Query 1 ATTTTAAGTCTCTAATCTCATCTTTCCATTTTCAAGAAGACTTTTAAATCTGtctctctc 60
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATTTTAAGTCTTTAATCTCATCTTTCCATTTTCAAGAAGACTTTTAAATCTGTCTCTCTC 60
Query 61 tctctctTTGTAAATATACATATATAGATAAGCTCACATATATGGCGACTGAAACATCTT 120
|||||||||| ||| | | |||||||||||||| ||||||||||
Sbjct 61 TCTCTCTTTG------TAC-----------A--T-ACATATATGGCGACAGAAACATCTT 100
Query 121 CTTTGAAGCTCTTCGGTATAAACCTACTTGAAACGACGTCGG-TTCAAAACCAGTCATCG 179
|||||||||||||||||||||||||||||||||||||||||| | | ||||| ||| ||
Sbjct 101 CTTTGAAGCTCTTCGGTATAAACCTACTTGAAACGACGTCGGATAC-AAACCGGTCGTCC 159
Query 180 GAACCAAGACCCGGATCCGGATCAGGATCCGAGTCACGTAAGTACGAGTGTCAATACTGT 239
||||||||| ||||| ||||| | |||||||||||||||||||||||||||||||| |||
Sbjct 160 GAACCAAGATCCGGACCCGGAACTGGATCCGAGTCACGTAAGTACGAGTGTCAATATTGT 219
Query 240 TGTAGAGAGTTTGCTAACTCTCAAGCTCTTGGTGGTCACCAAAACGCTCACAAGAAAGAG 299
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 220 TGTAGAGAGTTTGCGAACTCTCAAGCTCTTGGTGGTCACCAAAACGCTCACAAGAAAGAG 279
Query 300 CGTCAGCTTCTTAAACGTGCACAGATGTTAGCTACTCGTGGTTTGCCACGTCATCATAAT 359
|||||||||||||||||||||||||||||||||||||| || ||| ||||||||||||||
Sbjct 280 CGTCAGCTTCTTAAACGTGCACAGATGTTAGCTACTCGCGGCTTGACACGTCATCATAAT 339
Query 360 TTTCACCCTCATACCAATCCGCTTCTCTCCGCCTTCGCGCCGCTGCCTCACCTCCTCTCT 419
|||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||
Sbjct 340 TTTCACCCTCATACCAATCCGCTTCTTTCCGCCTTCGCACCGCTGCCTCACCTCCTCTCT 399
Query 420 CAGCCGCATCCTCCGCCGCATATGATGCTCTCTCCTTCTTCTTCGAGTTCTAAGTGGCTT 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 400 CAGCCGCATCCTCCGCCGCATATGATGCTCTCTCCTTCTTCTTCGAGTTCTAAGTGGCTT 459
Query 480 TACGGTGAACACATGTCGTCACAAAACGCCGTTGGGTACTTTCATGGTGGAAGGGGACTT 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 460 TACGGTGAACACATGTCGTCACAAAACGCCGTTGGGTACTTTCATGGTGGAAGGGGACTT 519
Query 540 TACGGAGGTGGCATGGAGTCTATGGCCGGAGAAGTAAAGACTCATGGTGGTTCTTTGCCG 599
|| |||||||| |||||||||||||| | || || ||| |||| |||||||||||||||
Sbjct 520 TATGGAGGTGGTATGGAGTCTATGGCAGAAGGGGTTAAGGCTCACGGTGGTTCTTTGCCG 579
Query 600 GAGATGAGGAGGTTCGCCGGAGATAGTGATCGGAGTAGCGGAATTAAGTTAGAGAATGGT 659
||||||||||||||||||||||| |||||||||||||||||| | |||||||||||||||
Sbjct 580 GAGATGAGGAGGTTCGCCGGAGAGAGTGATCGGAGTAGCGGAGTCAAGTTAGAGAATGGT 639
Query 660 ATTGGGCTGGACCTCCATTTAAGCCTTGGGCCATGAATGATTATAATTTTGGCCCAGTAA 719
||||||||||||||||||||||| ||||||||||||||||| | |||||||||||||||
Sbjct 640 ATTGGGCTGGACCTCCATTTAAGTATTGGGCCATGAATGATTTTTATTTTGGCCCAGTAA 699
Query 720 AGATCTGTAAAATACTACTAGGATTTCATTTTTATAGAGTATGttttttt-----CCTTA 774
| ||||||||||||||||| |||| |||||| | |||||| | ||||||| |||||
Sbjct 700 AAATCTGTAAAATACTACTCGGATCTCATTTATCTAGAGTGTTTTTTTTTTTTTTCCTTA 759
Query 775 ATTTCGGTTGAAATTGGTGAATATTTTTATCTCTTACTT-ACCAAATCTCATATTTCTAT 833
||||| ||||||||| |||| ||||||| | |||||||| ||||||||| ||||| ||||
Sbjct 760 ATTTCAGTTGAAATTAGTGATTATTTTT-T-TCTTACTTTACCAAATCTTATATT-CTAT 816
Query 834 GTATGCGTTTGCTTTCACtttttttttttATATAATTCTTCTTGTAAAAAATGCAATGTG 893
|||||||||||||||||| |||||| |||| | ||||||||||||| |||||||||
Sbjct 817 GTATGCGTTTGCTTTCACCTTTTTT----ATAT--T-CTTCTTGTAAAAA-TGCAATGTG 868
Query 894 AGTTTTCTTCCCTATCATTCTGTCAAGCTTTGGTTCAATTATTTAGTAATCGAATAAT-A 952
| |||||||||||||||||||||||| ||||||||||||||||||||||||||| ||| |
Sbjct 869 AATTTTCTTCCCTATCATTCTGTCAA-CTTTGGTTCAATTATTTAGTAATCGAA-AATTA 926
Query 953 TAG 955
|||
Sbjct 927 TAG 929
> Ahg926113 jgi|Araly1|926113|scaffold_201674.1
Length=776
Score = 152 bits (82), Expect = 4e-36
Identities = 101/110 (92%), Gaps = 2/110 (2%)
Strand=Plus/Plus
Query 215 ACGTAAGTACGAGTGTCAATACTGTTGTAGAGAGTTTGCTAACTCTCAAGCTCTT-GGTG 273
|||||||||||||||||| ||||||||||||||||||| |||||| ||||| ||| ||||
Sbjct 230 ACGTAAGTACGAGTGTCAGTACTGTTGTAGAGAGTTTGGTAACTCACAAGC-CTTAGGTG 288
Query 274 GTCACCAAAACGCTCACAAGAAAGAGCGTCAGCTTCTTAAACGTGCACAG 323
||||||||||||||||||||||||||||||| | ||||||||||| |||
Sbjct 289 GTCACCAAAACGCTCACAAGAAAGAGCGTCAACAGCTTAAACGTGCTCAG 338
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 36026156565
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5