BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G67035.2
Length=981
Score E
Sequences producing significant alignments: (Bits) Value
Ahg475798 jgi|Araly1|475798|fgenesh2_kg.2__928__AT1G67035.1 658 0.0
Ahg915917 jgi|Araly1|915917|Al_scaffold_0008_668 287 1e-76
Ahg494151 jgi|Araly1|494151|fgenesh2_kg.7__3584__AT5G38300.1 87.9 1e-16
> Ahg475798 jgi|Araly1|475798|fgenesh2_kg.2__928__AT1G67035.1
Length=655
Score = 658 bits (356), Expect = 0.0
Identities = 454/501 (91%), Gaps = 8/501 (2%)
Strand=Plus/Plus
Query 103 GATACAATCTCAAACCCTAGTTTGGAATCTCTGCTTTTTC-CTGTTAATCCAATGTCAGA 161
||||||||||||||||||||| ||||||||||| |||||| | ||| || |||| || ||
Sbjct 1 GATACAATCTCAAACCCTAGTATGGAATCTCTG-TTTTTCTCCGTTGATTCAATCTCCGA 59
Query 162 TACACAACAAAAACTCAAGCTTTTGGTTGATAACGGTGATTACGGATTCGAGAGAGGATC 221
||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||
Sbjct 60 TACACAACAAAAACTCAAGCTTTTGGTTGATAATGGTGATTACGGATTCGAAAGAGGATC 119
Query 222 TAGATATGGAGAATACGCGAGATTACGAGAATCAAAACTTCGTATGAAACGAGACTTCGA 281
||||||||||||||||||||||||||||||||| || ||||| |||||||||||||||||
Sbjct 120 TAGATATGGAGAATACGCGAGATTACGAGAATCGAAGCTTCGAATGAAACGAGACTTCGA 179
Query 282 GAAGATTCTAAAGGAAGAACAAGTGAGATTTGGGTTCACCAGAGAAGAAGAAATCAGGGT 341
||||||||| |||||||| || |||||||||| || | ||||||||||||||||| ||
Sbjct 180 GAAGATTCTTAAGGAAGAGGAATTGAGATTTGGTTTTAATAGAGAAGAAGAAATCAGAGT 239
Query 342 TTTGCCGGAGAAGAAGACGAGATTCGGATTTAACCCTAATCAGAGGAAAACGTCGTCGTC 401
|||||| ||||||||||||||||||||||||| | |||||||||||||||||||||||
Sbjct 240 TTTGCCTGAGAAGAAGACGAGATTCGGATTTATTCAGAATCAGAGGAAAACGTCGTCGTC 299
Query 402 TTCTTCTTCTTCGTTGGCTCAATCTGTTCCTGATTTCTCTTCTATGATTCGTAAAGAGAA 461
|||||| | | | | ||||||| ||||||||||||||| |||||||||||||||||||
Sbjct 300 TTCTTCAT-T--G--G-CTCAATCGGTTCCTGATTTCTCTGCTATGATTCGTAAAGAGAA 353
Query 462 TCGTCGACCACCAGTTAATTCGAATTTGCTTCCTCGGAGAACAGAACTTACTCCACCGTC 521
|||||||||||| ||||||||||||||| ||||||||||||||||||| ||||||||| |
Sbjct 354 TCGTCGACCACCGGTTAATTCGAATTTGATTCCTCGGAGAACAGAACTAACTCCACCGCC 413
Query 522 GATGAAGAGTAGAAACGCCGCCGTTTTCGCTGGATCTGTGATTAGAGGAAGTGTTTCAGC 581
|||||||||||||||||| |||||||||||||| || ||| ||||||||||| |||||
Sbjct 414 GATGAAGAGTAGAAACGCTGCCGTTTTCGCTGGTTCGGTGGCGAGAGGAAGTGTATCAGC 473
Query 582 GAGTGCTGGTGAGAAGAAAGG 602
|||||||||||||||||||||
Sbjct 474 GAGTGCTGGTGAGAAGAAAGG 494
Score = 202 bits (109), Expect = 4e-51
Identities = 152/171 (89%), Gaps = 9/171 (5%)
Strand=Plus/Plus
Query 717 AGGAGGAAGGAAATCACTTGGCGGCGGTGGTGGTGGTCGGACTATTCTAGGTTACAGACA 776
|||||||||||||||| || ||| ||||||||||||||||||||||||||||||||
Sbjct 492 AGGAGGAAGGAAATCAATT---GGC---GGTGGTGGTCGGACTATTCTAGGTTACAGACA 545
Query 777 AATTTATTGATTCTTTTGTTCTTGTTTGTGTCCAAACTCTAACATTTGT-GTTCAAAGTT 835
|||||| ||||||||| | ||||||||| || ||| |||||||||||| | ||||||||
Sbjct 546 AATTTACTGATTCTTT-GATCTTGTTTGCCTCTAAAATCTAACATTTGTTGCTCAAAGTT 604
Query 836 TGtttttttgtgtgtttaattggtttt-gattgataaagattagtcctttt 885
||||||||| |||||||||| |||||| |||||||||||||||||||||||
Sbjct 605 TGTTTTTTTCTGTGTTTAATGGGTTTTTGATTGATAAAGATTAGTCCTTTT 655
> Ahg915917 jgi|Araly1|915917|Al_scaffold_0008_668
Length=324
Score = 287 bits (155), Expect = 1e-76
Identities = 185/200 (93%), Gaps = 0/200 (0%)
Strand=Plus/Plus
Query 399 GTCTTCTTCTTCTTCGTTGGCTCAATCTGTTCCTGATTTCTCTTCTATGATTCGTAAAGA 458
||| || |||||||||||||||||||| ||||||| ||||||| || ||||||||| |||
Sbjct 120 GTCGTCGTCTTCTTCGTTGGCTCAATCGGTTCCTGGTTTCTCTGCTCTGATTCGTATAGA 179
Query 459 GAATCGTCGACCACCAGTTAATTCGAATTTGCTTCCTCGGAGAACAGAACTTACTCCACC 518
||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||
Sbjct 180 GAATCGTCGACCACCGGTTAATTCGAATTTGCTTCCTCGGAGAACAGAACTTACTCTACC 239
Query 519 GTCGATGAAGAGTAGAAACGCCGCCGTTTTCGCTGGATCTGTGATTAGAGGAAGTGTTTC 578
| || |||||||||||||||| ||||||| ||||||||| ||| ||||||||||||||||
Sbjct 240 GCCGGTGAAGAGTAGAAACGCTGCCGTTTACGCTGGATCAGTGGTTAGAGGAAGTGTTTC 299
Query 579 AGCGAGTGCTGGTGAGAAGA 598
||||||||||||||||||||
Sbjct 300 AGCGAGTGCTGGTGAGAAGA 319
> Ahg494151 jgi|Araly1|494151|fgenesh2_kg.7__3584__AT5G38300.1
Length=1090
Score = 87.9 bits (47), Expect = 1e-16
Identities = 55/59 (93%), Gaps = 0/59 (0%)
Strand=Plus/Plus
Query 409 TCTTCGTTGGCTCAATCTGTTCCTGATTTCTCTTCTATGATTCGTAAAGAGAATCGTCG 467
|||||||||||||||||||||||||||||||| || |||| |||||||||||||||||
Sbjct 527 TCTTCGTTGGCTCAATCTGTTCCTGATTTCTCCGCTGTGATACGTAAAGAGAATCGTCG 585
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 36445508652
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5