BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G67035.2 Length=981 Score E Sequences producing significant alignments: (Bits) Value Ahg475798 jgi|Araly1|475798|fgenesh2_kg.2__928__AT1G67035.1 658 0.0 Ahg915917 jgi|Araly1|915917|Al_scaffold_0008_668 287 1e-76 Ahg494151 jgi|Araly1|494151|fgenesh2_kg.7__3584__AT5G38300.1 87.9 1e-16 > Ahg475798 jgi|Araly1|475798|fgenesh2_kg.2__928__AT1G67035.1 Length=655 Score = 658 bits (356), Expect = 0.0 Identities = 454/501 (91%), Gaps = 8/501 (2%) Strand=Plus/Plus Query 103 GATACAATCTCAAACCCTAGTTTGGAATCTCTGCTTTTTC-CTGTTAATCCAATGTCAGA 161 ||||||||||||||||||||| ||||||||||| |||||| | ||| || |||| || || Sbjct 1 GATACAATCTCAAACCCTAGTATGGAATCTCTG-TTTTTCTCCGTTGATTCAATCTCCGA 59 Query 162 TACACAACAAAAACTCAAGCTTTTGGTTGATAACGGTGATTACGGATTCGAGAGAGGATC 221 ||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||| Sbjct 60 TACACAACAAAAACTCAAGCTTTTGGTTGATAATGGTGATTACGGATTCGAAAGAGGATC 119 Query 222 TAGATATGGAGAATACGCGAGATTACGAGAATCAAAACTTCGTATGAAACGAGACTTCGA 281 ||||||||||||||||||||||||||||||||| || ||||| ||||||||||||||||| Sbjct 120 TAGATATGGAGAATACGCGAGATTACGAGAATCGAAGCTTCGAATGAAACGAGACTTCGA 179 Query 282 GAAGATTCTAAAGGAAGAACAAGTGAGATTTGGGTTCACCAGAGAAGAAGAAATCAGGGT 341 ||||||||| |||||||| || |||||||||| || | ||||||||||||||||| || Sbjct 180 GAAGATTCTTAAGGAAGAGGAATTGAGATTTGGTTTTAATAGAGAAGAAGAAATCAGAGT 239 Query 342 TTTGCCGGAGAAGAAGACGAGATTCGGATTTAACCCTAATCAGAGGAAAACGTCGTCGTC 401 |||||| ||||||||||||||||||||||||| | ||||||||||||||||||||||| Sbjct 240 TTTGCCTGAGAAGAAGACGAGATTCGGATTTATTCAGAATCAGAGGAAAACGTCGTCGTC 299 Query 402 TTCTTCTTCTTCGTTGGCTCAATCTGTTCCTGATTTCTCTTCTATGATTCGTAAAGAGAA 461 |||||| | | | | ||||||| ||||||||||||||| ||||||||||||||||||| Sbjct 300 TTCTTCAT-T--G--G-CTCAATCGGTTCCTGATTTCTCTGCTATGATTCGTAAAGAGAA 353 Query 462 TCGTCGACCACCAGTTAATTCGAATTTGCTTCCTCGGAGAACAGAACTTACTCCACCGTC 521 |||||||||||| ||||||||||||||| ||||||||||||||||||| ||||||||| | Sbjct 354 TCGTCGACCACCGGTTAATTCGAATTTGATTCCTCGGAGAACAGAACTAACTCCACCGCC 413 Query 522 GATGAAGAGTAGAAACGCCGCCGTTTTCGCTGGATCTGTGATTAGAGGAAGTGTTTCAGC 581 |||||||||||||||||| |||||||||||||| || ||| ||||||||||| ||||| Sbjct 414 GATGAAGAGTAGAAACGCTGCCGTTTTCGCTGGTTCGGTGGCGAGAGGAAGTGTATCAGC 473 Query 582 GAGTGCTGGTGAGAAGAAAGG 602 ||||||||||||||||||||| Sbjct 474 GAGTGCTGGTGAGAAGAAAGG 494 Score = 202 bits (109), Expect = 4e-51 Identities = 152/171 (89%), Gaps = 9/171 (5%) Strand=Plus/Plus Query 717 AGGAGGAAGGAAATCACTTGGCGGCGGTGGTGGTGGTCGGACTATTCTAGGTTACAGACA 776 |||||||||||||||| || ||| |||||||||||||||||||||||||||||||| Sbjct 492 AGGAGGAAGGAAATCAATT---GGC---GGTGGTGGTCGGACTATTCTAGGTTACAGACA 545 Query 777 AATTTATTGATTCTTTTGTTCTTGTTTGTGTCCAAACTCTAACATTTGT-GTTCAAAGTT 835 |||||| ||||||||| | ||||||||| || ||| |||||||||||| | |||||||| Sbjct 546 AATTTACTGATTCTTT-GATCTTGTTTGCCTCTAAAATCTAACATTTGTTGCTCAAAGTT 604 Query 836 TGtttttttgtgtgtttaattggtttt-gattgataaagattagtcctttt 885 ||||||||| |||||||||| |||||| ||||||||||||||||||||||| Sbjct 605 TGTTTTTTTCTGTGTTTAATGGGTTTTTGATTGATAAAGATTAGTCCTTTT 655 > Ahg915917 jgi|Araly1|915917|Al_scaffold_0008_668 Length=324 Score = 287 bits (155), Expect = 1e-76 Identities = 185/200 (93%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 399 GTCTTCTTCTTCTTCGTTGGCTCAATCTGTTCCTGATTTCTCTTCTATGATTCGTAAAGA 458 ||| || |||||||||||||||||||| ||||||| ||||||| || ||||||||| ||| Sbjct 120 GTCGTCGTCTTCTTCGTTGGCTCAATCGGTTCCTGGTTTCTCTGCTCTGATTCGTATAGA 179 Query 459 GAATCGTCGACCACCAGTTAATTCGAATTTGCTTCCTCGGAGAACAGAACTTACTCCACC 518 ||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||| Sbjct 180 GAATCGTCGACCACCGGTTAATTCGAATTTGCTTCCTCGGAGAACAGAACTTACTCTACC 239 Query 519 GTCGATGAAGAGTAGAAACGCCGCCGTTTTCGCTGGATCTGTGATTAGAGGAAGTGTTTC 578 | || |||||||||||||||| ||||||| ||||||||| ||| |||||||||||||||| Sbjct 240 GCCGGTGAAGAGTAGAAACGCTGCCGTTTACGCTGGATCAGTGGTTAGAGGAAGTGTTTC 299 Query 579 AGCGAGTGCTGGTGAGAAGA 598 |||||||||||||||||||| Sbjct 300 AGCGAGTGCTGGTGAGAAGA 319 > Ahg494151 jgi|Araly1|494151|fgenesh2_kg.7__3584__AT5G38300.1 Length=1090 Score = 87.9 bits (47), Expect = 1e-16 Identities = 55/59 (93%), Gaps = 0/59 (0%) Strand=Plus/Plus Query 409 TCTTCGTTGGCTCAATCTGTTCCTGATTTCTCTTCTATGATTCGTAAAGAGAATCGTCG 467 |||||||||||||||||||||||||||||||| || |||| ||||||||||||||||| Sbjct 527 TCTTCGTTGGCTCAATCTGTTCCTGATTTCTCCGCTGTGATACGTAAAGAGAATCGTCG 585 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 36445508652 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5