BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G67040.1
Length=3101
Score E
Sequences producing significant alignments: (Bits) Value
Ahg475799 jgi|Araly1|475799|fgenesh2_kg.2__929__AT1G67040.1 2623 0.0
> Ahg475799 jgi|Araly1|475799|fgenesh2_kg.2__929__AT1G67040.1
Length=2861
Score = 2623 bits (1420), Expect = 0.0
Identities = 1990/2250 (88%), Gaps = 100/2250 (4%)
Strand=Plus/Plus
Query 426 TCTTGTTGTACATTCATCTCTCAGAGATTCCCCAAATTCACAAAAGCTGAG-AACTCAAA 484
||||| ||||||||||||||| ||||||||| |||| |||||||||||||| |||
Sbjct 323 TCTTGATGTACATTCATCTCTGAGAGATTCCACAAACTCACAAAAGCTGAGTGACT-TTT 381
Query 485 AAGAGAGAGTTTTGTTTCT-CTGGTTGT-TTGATTATGTGATAAAGTTTTGGAATTTGAG 542
|||| ||| | || || | ||||||||||||||||||| |||||||||||
Sbjct 382 TCTTTTTTCTTTT-TTTTTGCTTCTT-TCTTGATTATGTGATAAAGTTATGGAATTTGAG 439
Query 543 GCAATGTGTCTCTAAAGGAGACTTTTTTACAGTGTTTGAGATTTCTCTGAAACTTGTGGG 602
||||||||||||||||||||||||||||| ||||||||||| |||||| | ||||| ||
Sbjct 440 ACAATGTGTCTCTAAAGGAGACTTTTTTACTGTGTTTGAGATATCTCTG-AGCTTGT-GG 497
Query 603 GTTTGTTAGGGTTTCGTGATGACAGGAGAGTTACAGGAGACGACGGCGCCGTGTGCGGCT 662
||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||
Sbjct 498 GTTTGTTAGGGTTTCGTTATGACGGGAGAGTTACAGGAGACGACGGCGCCGTGTGCGGCT 557
Query 663 ATAACAGAGAAACGACCAAATCGACTCGGTGGTTGTGTCGGTGTTTTCTTCCAGCTCTTT 722
||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 558 ATAACTGAGAAACGACCAAATCGACTTGGTGGTTGTGTCGGTGTTTTCTTCCAGCTCTTT 617
Query 723 GATTGGAACCGACGCTTTGCTAAAAAGAAACTCTTTTCTCGCAAATCACTTCTTCCTGGG 782
|||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 618 GATTGGAATCGACGTTTTGCTAAAAAGAAACTCTTTTCTCGCAAATCACTTCTTCCTGGA 677
Query 783 AAACAAGTTTCGAAGAGGTTTGGAGGAAATGAGAAGATGTTAAAGTCTAAGCTTAATCTG 842
|||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||
Sbjct 678 AAACAAGTTTCGAAGAGGTTTGGAGGGAATGAGAAGATGTTAAAGTCAAAGCTTAATCTG 737
Query 843 ATTGATGATGAGAACAGAGGAAGTTTCCCAAATCGGA-ATGAAGTTATGGAG-G-TTAAA 899
|||||||||||||||||||||||||| |||||| || ||||| | ||||| | ||||
Sbjct 738 ATTGATGATGAGAACAGAGGAAGTTTTCCAAAT-AGAGGTGAAG-T-TGGAGAGCTTAAG 794
Query 900 AAGCATGAAATGAGATCTCCTAGTTTAGTAGCACGTTTAATGGGACTTGAATCAATGCCA 959
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 795 AAGCATGAAATGAGATCTCCTAGTTTAGTAGCACGTTTAATGGGACTTGAATCAATGCCA 854
Query 960 TCTAATCATAGAGACAAAGGGAAGAACAAGAAGAAGAAACCGTTGTTTTCGCAGATTCAA 1019
|||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 855 TCTAGTCATAGAGACAAAGGGAAGAACAAGAAGAAGAAACAGTTGTTTTCGCAGATTCAA 914
Query 1020 GATACCGATAAATGTGACTTGTTTGATGTGgaagaagaagaagaagaTAGTGGTGTTGAT 1079
| |||||||||||||||||||||||||| || ||||||||||||||||||||| |||||
Sbjct 915 GGTACCGATAAATGTGACTTGTTTGATG-GG--GAAGAAGAAGAAGATAGTGGTTTTGAT 971
Query 1080 AAGTTAAGACCACAGAAGATGCAGAGAACGACAGGAGTTTGTGATAGGCGTGTTGCGGTT 1139
|||||||| |||||||||||||||||||| || ||||||||||||||||||||||||||
Sbjct 972 AAGTTAAGGCCACAGAAGATGCAGAGAACAACGGGAGTTTGTGATAGGCGTGTTGCGGTG 1031
Query 1140 AAGAAGTTTGGTTCTGAAGCGTTGCAGATTAAGAATGTTTTGACTAGAGTAAGGAAACAT 1199
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1032 AAGAAGTTTGGTTCTGATGCGTTGCAGATTAAGAATGTTTTGACTAGAGTAAGGAAACAT 1091
Query 1200 CATCAGTATAAT---CATCA---GCATCAGAAACTAGCTTCTCCTGTTAGAAGTCCGAGG 1253
|||||||||||| ||||| |||||||||||| ||||||||||||||||||||||||
Sbjct 1092 CATCAGTATAATAGTCATCATCAGCATCAGAAACTGGCTTCTCCTGTTAGAAGTCCGAGG 1151
Query 1254 ATGAATAGAAGAAGTTCTAGGTTGATTGATGCTGCTGCTAGGATTCTTGAGCCGGGGAAG 1313
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1152 TTGAATAGAAGAAGTTCTAGGTTGATTGATGCTGCTGCTAGGATTCTTGAACCGGGGAAG 1211
Query 1314 AGAAATGCGAAAGGCGCTATTGCTTATCCTGGTTCTACGGGGATTAGAAGGTTCGAAAAT 1373
|||||||||||| |||||||||||||||| |||||| ||||| |||||||||| ||||||
Sbjct 1212 AGAAATGCGAAATGCGCTATTGCTTATCCAGGTTCTTCGGGGTTTAGAAGGTTTGAAAAT 1271
Query 1374 GCTGCGAAAGAACCGGTTG---TT-T--CACCCGAGTTTCAATGTGGTTATAACAATAGT 1427
|||| |||||| ||||||| || | |||| |||||||||||||||||||| ||||||
Sbjct 1272 GCTGGGAAAGAGCCGGTTGAAGTTGTTTCACCTGAGTTTCAATGTGGTTATAATAATAGT 1331
Query 1428 GTTGCTTCTTGTAAATCTTGTGGTAGTTTGGTTGATGTGAATGGTTCGATTCAGGTAGTT 1487
||||||||||||||| |||||||||| |||||||||||||||||||||| || |||||||
Sbjct 1332 GTTGCTTCTTGTAAAGCTTGTGGTAGCTTGGTTGATGTGAATGGTTCGAGTCCGGTAGTT 1391
Query 1488 CAAGACACTGGAAACAACATGGCGTGTGTTTCTGAATCAACGCCTTTTCAACGGAGTAAA 1547
|||| ||||| || | | ||||||||||||||| |||||||||||||||||||||||||
Sbjct 1392 GAAGAAACTGGTAAGAGCGTGGCGTGTGTTTCTGCATCAACGCCTTTTCAACGGAGTAAA 1451
Query 1548 AGAAATGTGTTTTGGAGAAATGAAGATTCA-T-CTGTGTCT-GTT-TCTGGTAAAGACAG 1603
|||||||||||||||||||||||||| || | | | || || | || |||| |
Sbjct 1452 AGAAATGTGTTTTGGAGAAATGAAGA--CAGTACAGA-TCAAGTGGTGAGG-AAAG-CTC 1506
Query 1604 TACTGATCAAATGGT-GA-A-GAAAGCTCTACACCGTGCT-CAATTTAA-GGATGAAATG 1658
||| | | || | || | || || | || | | || | || ||||||||||
Sbjct 1507 TAC--ACCG--TGCTCGATATGA---CT-T-CAATGGGAAGCA-TGGAAAGGATGAAATG 1556
Query 1659 TCGCTGCCGGGTTATAGAAACAGATCCGAATATCATAAGAAGGTGTTGCATAGAGAGGAA 1718
||||| ||||||| |||||||||| || |||||||| |||||||||||||| |||||
Sbjct 1557 TCGCTACCGGGTTTTAGAAACAGA---GATTATCATAATAAGGTGTTGCATAGGGAGGAC 1613
Query 1719 AGGTTTCCTCCGGAAGCTCGATCTTTCGCCTTACCGAGTAAAAGAAGTTGTTCTTCACCT 1778
||||||||||| |||||||||||||| |||||||| ||||||||| ||||||||||||||
Sbjct 1614 AGGTTTCCTCCAGAAGCTCGATCTTTTGCCTTACCAAGTAAAAGAGGTTGTTCTTCACCT 1673
Query 1779 GCTAATGCTATCAACAGTAAAGAGAAGGACTTTATAGCTATGAATAGAGGTTCAACTAGT 1838
|| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1674 GCAAATGCTATCAACTGTAAAGAGAAGGACTTTATAGCTATGAATAGAGGTTCAACTAGT 1733
Query 1839 AGGAGTCATCACTCGAAGTCCCCGGTTAAATTTGAAAACTCTGATTTGAATCTGCAGAGA 1898
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1734 AGGAGTCATCACTCGAAGTCCCCGGTTAAATTTGAAAACTCTGATTTGAATCTGCAGAGA 1793
Query 1899 AAATCTCATACTAGAGTTGAGGAGTCTTGTAATAGATCAGG-ATTAAGTACACCTGGACG 1957
|||||||| |||||||||||||||||| ||| |||||| || |||||| ||||| |||||
Sbjct 1794 AAATCTCAGACTAGAGTTGAGGAGTCTAGTAGTAGATC-GGTATTAAGCACACCAGGACG 1852
Query 1958 GAAGAGGAGGCTAGCTTGTGAAAGTGGTCATGGACGAGGAAGTAG-TTCTATGAGTCCAG 2016
||||||||||||||||||||| |||||||| |||||||||| ||| || || |||||||
Sbjct 1853 GAAGAGGAGGCTAGCTTGTGATAGTGGTCACGGACGAGGAATTAGCTT-TACCAGTCCAG 1911
Query 2017 TGTCAAGAAGATTGGATAGTGAATACTCTTGTGCTT---GTA--G----------TA--A 2059
||||| |||||| ||| |||||| |||||| |||| ||| | || |
Sbjct 1912 GGTCAAAAAGATTAGATGGTGAATGCTCTTGCGCTTTTAGTAATGGCCCCAGCGGTAGCA 1971
Query 2060 -TGAAACTGCATTTTCATCACTGAAACTTGGTTC-CTCTAATAGACATTATAGCCAATGC 2117
||||||||||||| ||||||||||||||||||| || | | ||| || |||||||||||
Sbjct 1972 ATGAAACTGCATTTCCATCACTGAAACTTGGTTCACT-TCACAGAAATAATAGCCAATGC 2030
Query 2118 TGTAGAGAAACCAAAGAGAGAAGAGGAGTTCAACGCGTTCCCAGACCATCCTTTACGAAA 2177
||||||| ||| |||||||||| |||||||||||| ||||| ||||| ||||||||||||
Sbjct 2031 TGTAGAGGAACTAAAGAGAGAAAAGGAGTTCAACGTGTTCCAAGACCTTCCTTTACGAAA 2090
Query 2178 AGGCCACTGCTTGATGTAGGCACTCTCGGGTTGATTCAGCAAAAGTTGAAAGAATTGGCT 2237
||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 2091 AGGCCACCGCTTGATGTAGGTACTCTCGGGTTGATTCAGCAAAAGTTGAAAGAATTGGCT 2150
Query 2238 TCTCAAGAAGAAGATGAGGCCAATGGAGAAAGTGGTTTTCCCAATAAACCAGCTTCTTTG 2297
||||| ||||||||||||||||| |||||||||| ||||||||||||| |||| ||||||
Sbjct 2151 TCTCAGGAAGAAGATGAGGCCAAAGGAGAAAGTGTTTTTCCCAATAAATCAGCCTCTTTG 2210
Query 2298 ATTCTCCATGAATTGCTATCTTCTTTAGCTTTGCAGCAGCAGCCTTATGTTCGAGATATC 2357
||||||||||||||||||||||||||||||||| |||||| | |||| ||||||||||
Sbjct 2211 ATTCTCCATGAATTGCTATCTTCTTTAGCTTTGGAGCAGC-G--TTATAATCGAGATATC 2267
Query 2358 GATATGCCTTAT-C-G-----G---A--G-A--AAAGGCAAAACA-GAGTTTTGGAGTTC 2401
||||||||||| | | | | | | |||||||||| | ||||| ||||| |
Sbjct 2268 GATATGCCTTACGCAGAAACAGCTTATCGGAGGAAAGGCAAAA-ATGAGTTGTGGAGCCC 2326
Query 2402 CATTGGAAATGCAAACAGTGAGTACACTAGCCCGGGATCTGTACTCGATGCATCTTTCTC 2461
| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 2327 CGTTGGAAATGCAAACAGTGAGTACACTAGCCCGGGTTCTGTACTCGATGCATCTTTCTC 2386
Query 2462 CAATGAGAGCTGCTTTTCGAACAGCTTCGACAATATCTCAGGACAAATGAGGCTACCTCT 2521
||||||||| | ||||| || ||||| |||||| ||||||||||||||||||| |||||
Sbjct 2387 CAATGAGAGTTTTTTTTCAAATAGCTTTGACAATGTCTCAGGACAAATGAGGCTGCCTCT 2446
Query 2522 AGAGCCTATAGAACCAGATTGGGACATTCTTGAAGATTATGCGACTTCATTCAAGAATTC 2581
||||||||||||||| || ||| |||| || ||||||| ||||||||||||||| ||||
Sbjct 2447 AGAGCCTATAGAACCCGACTGGAACATCCTCGAAGATTCCGCGACTTCATTCAAGCATTC 2506
Query 2582 AACAAGTGATGGTAATTATCAGGCGATCGC 2611
|||||||| |||||||||||||||||||||
Sbjct 2507 AACAAGTGGTGGTAATTATCAGGCGATCGC 2536
Score = 318 bits (172), Expect = 1e-85
Identities = 307/364 (84%), Gaps = 41/364 (11%)
Strand=Plus/Plus
Query 28 GTCTACTTGTATCAGCTACTTAACCTTTTGTGCGCATGC-T-TCTCTTTCTTCTGTTAAC 85
||||||||||||||||||||||||||||||||||||||| | ||||||||||||| ||||
Sbjct 1 GTCTACTTGTATCAGCTACTTAACCTTTTGTGCGCATGCTTCTCTCTTTCTTCTG-TAAC 59
Query 86 AATCTCTCTCGAGCCCCTTTCACCGTCAGTGACAACAGAGAGAATCACAGTAATAATTTT 145
|||||||||||||| ||||||||||||||||||||| |||| || ||
Sbjct 60 AATCTCTCTCGAGCTCCTTTCACCGTCAGTGACAAC--AGAG------AG----AA---- 103
Query 146 TACACAAAAAAGATTTCTCTTCTTCTCTTATCATCTCTCTTTCAATCACTTCTCGTCACT 205
| ||| | | | | || ||| | |||||||||||||||||||||||||||||||
Sbjct 104 T-CAC--AGTA-A--T-AATT-TTCAC--ATCATCTCTCTTTCAATCACTTCTCGTCACT 153
Query 206 ATCGTTTTGCTTTTGTCTCCTTTCACTTTTTTAAACTCCCAATTGCGAATATT-ACCCGT 264
||||||||||||||||||||||||||||||| |||||| |||||||||||||| ||||||
Sbjct 154 ATCGTTTTGCTTTTGTCTCCTTTCACTTTTT-AAACTCTCAATTGCGAATATTTACCCGT 212
Query 265 TGAGTTCTCATTTCGTGACActtcaactttttccattcttcttaaaaagctctgtttctt 324
|||||||||| ||| |||||| | ||||||||||||||||| |||||||||||||||||
Sbjct 213 TGAGTTCTCAGTTCTTGACACATAAACTTTTTCCATTCTTCCAAAAAAGCTCTGTTTCTT 272
Query 325 tctttctttcttcttcCACTGTTGTGTACCATTGTCGTTTTCTTGATTCTCCACCTGTCT 384
|||| ||| || ||||| || ||||||||||||||||||||| |||| ||||||
Sbjct 273 TCTT-CTT-CT------ACTGTAGT--ACCATTGTCGTTTTCTTGATTTTCCAACTGTCT 322
Query 385 TCTT 388
||||
Sbjct 323 TCTT 326
Score = 274 bits (148), Expect = 3e-72
Identities = 243/287 (85%), Gaps = 14/287 (5%)
Strand=Plus/Plus
Query 2818 TCAATCTCCCTGGACTAACTGGAGGGTTCCTAGTAGATGCCATGATCGAACACTTGGAAG 2877
|||| |||||||||||||| || |||||||| |||||||| |||||||||||||||||||
Sbjct 2539 TCAACCTCCCTGGACTAACCGGCGGGTTCCTCGTAGATGCTATGATCGAACACTTGGAAG 2598
Query 2878 AAAC-AAACATTTCCTGCGGATTGTTAAAGCCATTGACTGCTAAACAAGACGAGCTGATT 2936
||| ||||||||||||||||||||||||| | || | |||||||| |||||| |||||
Sbjct 2599 -AACGAAACATTTCCTGCGGATTGTTAAAGTCTTTCAGTGCTAAACCTGACGAGTTGATT 2657
Query 2937 CGAGGTGTTATTGAAGAAGTTCCAAAGTGGGCTCGGGTTAATATGGATGAGGTTATCGGT 2996
||||||||| |||||||||||||||||||| ||||| |||| ||||||||||||||||||
Sbjct 2658 CGAGGTGTTCTTGAAGAAGTTCCAAAGTGGACTCGGATTAACATGGATGAGGTTATCGGT 2717
Query 2997 ATCGAAATGGA----T--CTTGAAAC-GCA--TTTG-T-TT-GGAGTTGGTTCAGAGATT 3044
||||||||||| | ||||| | | | ||| | || ||| | || |||||||||
Sbjct 2718 ATCGAAATGGAGAAATGGCTTGATCCTGAAACTTTTCTATTTGGAATAGGATCAGAGATT 2777
Query 3045 GCTTATGAGATTCTTCGGTGTTTAATCGGAGAGTTAGCAACCGATCT 3091
|| |||||||| ||||||||||| | || |||||| ||||||||||
Sbjct 2778 GCATATGAGATCCTTCGGTGTTTGGTTGGCGAGTTAACAACCGATCT 2824
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 117127503375
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5