BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G67040.1 Length=3101 Score E Sequences producing significant alignments: (Bits) Value Ahg475799 jgi|Araly1|475799|fgenesh2_kg.2__929__AT1G67040.1 2623 0.0 > Ahg475799 jgi|Araly1|475799|fgenesh2_kg.2__929__AT1G67040.1 Length=2861 Score = 2623 bits (1420), Expect = 0.0 Identities = 1990/2250 (88%), Gaps = 100/2250 (4%) Strand=Plus/Plus Query 426 TCTTGTTGTACATTCATCTCTCAGAGATTCCCCAAATTCACAAAAGCTGAG-AACTCAAA 484 ||||| ||||||||||||||| ||||||||| |||| |||||||||||||| ||| Sbjct 323 TCTTGATGTACATTCATCTCTGAGAGATTCCACAAACTCACAAAAGCTGAGTGACT-TTT 381 Query 485 AAGAGAGAGTTTTGTTTCT-CTGGTTGT-TTGATTATGTGATAAAGTTTTGGAATTTGAG 542 |||| ||| | || || | ||||||||||||||||||| ||||||||||| Sbjct 382 TCTTTTTTCTTTT-TTTTTGCTTCTT-TCTTGATTATGTGATAAAGTTATGGAATTTGAG 439 Query 543 GCAATGTGTCTCTAAAGGAGACTTTTTTACAGTGTTTGAGATTTCTCTGAAACTTGTGGG 602 ||||||||||||||||||||||||||||| ||||||||||| |||||| | ||||| || Sbjct 440 ACAATGTGTCTCTAAAGGAGACTTTTTTACTGTGTTTGAGATATCTCTG-AGCTTGT-GG 497 Query 603 GTTTGTTAGGGTTTCGTGATGACAGGAGAGTTACAGGAGACGACGGCGCCGTGTGCGGCT 662 ||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||| Sbjct 498 GTTTGTTAGGGTTTCGTTATGACGGGAGAGTTACAGGAGACGACGGCGCCGTGTGCGGCT 557 Query 663 ATAACAGAGAAACGACCAAATCGACTCGGTGGTTGTGTCGGTGTTTTCTTCCAGCTCTTT 722 ||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 558 ATAACTGAGAAACGACCAAATCGACTTGGTGGTTGTGTCGGTGTTTTCTTCCAGCTCTTT 617 Query 723 GATTGGAACCGACGCTTTGCTAAAAAGAAACTCTTTTCTCGCAAATCACTTCTTCCTGGG 782 |||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 618 GATTGGAATCGACGTTTTGCTAAAAAGAAACTCTTTTCTCGCAAATCACTTCTTCCTGGA 677 Query 783 AAACAAGTTTCGAAGAGGTTTGGAGGAAATGAGAAGATGTTAAAGTCTAAGCTTAATCTG 842 |||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||| Sbjct 678 AAACAAGTTTCGAAGAGGTTTGGAGGGAATGAGAAGATGTTAAAGTCAAAGCTTAATCTG 737 Query 843 ATTGATGATGAGAACAGAGGAAGTTTCCCAAATCGGA-ATGAAGTTATGGAG-G-TTAAA 899 |||||||||||||||||||||||||| |||||| || ||||| | ||||| | |||| Sbjct 738 ATTGATGATGAGAACAGAGGAAGTTTTCCAAAT-AGAGGTGAAG-T-TGGAGAGCTTAAG 794 Query 900 AAGCATGAAATGAGATCTCCTAGTTTAGTAGCACGTTTAATGGGACTTGAATCAATGCCA 959 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 795 AAGCATGAAATGAGATCTCCTAGTTTAGTAGCACGTTTAATGGGACTTGAATCAATGCCA 854 Query 960 TCTAATCATAGAGACAAAGGGAAGAACAAGAAGAAGAAACCGTTGTTTTCGCAGATTCAA 1019 |||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct 855 TCTAGTCATAGAGACAAAGGGAAGAACAAGAAGAAGAAACAGTTGTTTTCGCAGATTCAA 914 Query 1020 GATACCGATAAATGTGACTTGTTTGATGTGgaagaagaagaagaagaTAGTGGTGTTGAT 1079 | |||||||||||||||||||||||||| || ||||||||||||||||||||| ||||| Sbjct 915 GGTACCGATAAATGTGACTTGTTTGATG-GG--GAAGAAGAAGAAGATAGTGGTTTTGAT 971 Query 1080 AAGTTAAGACCACAGAAGATGCAGAGAACGACAGGAGTTTGTGATAGGCGTGTTGCGGTT 1139 |||||||| |||||||||||||||||||| || |||||||||||||||||||||||||| Sbjct 972 AAGTTAAGGCCACAGAAGATGCAGAGAACAACGGGAGTTTGTGATAGGCGTGTTGCGGTG 1031 Query 1140 AAGAAGTTTGGTTCTGAAGCGTTGCAGATTAAGAATGTTTTGACTAGAGTAAGGAAACAT 1199 ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 1032 AAGAAGTTTGGTTCTGATGCGTTGCAGATTAAGAATGTTTTGACTAGAGTAAGGAAACAT 1091 Query 1200 CATCAGTATAAT---CATCA---GCATCAGAAACTAGCTTCTCCTGTTAGAAGTCCGAGG 1253 |||||||||||| ||||| |||||||||||| |||||||||||||||||||||||| Sbjct 1092 CATCAGTATAATAGTCATCATCAGCATCAGAAACTGGCTTCTCCTGTTAGAAGTCCGAGG 1151 Query 1254 ATGAATAGAAGAAGTTCTAGGTTGATTGATGCTGCTGCTAGGATTCTTGAGCCGGGGAAG 1313 ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 1152 TTGAATAGAAGAAGTTCTAGGTTGATTGATGCTGCTGCTAGGATTCTTGAACCGGGGAAG 1211 Query 1314 AGAAATGCGAAAGGCGCTATTGCTTATCCTGGTTCTACGGGGATTAGAAGGTTCGAAAAT 1373 |||||||||||| |||||||||||||||| |||||| ||||| |||||||||| |||||| Sbjct 1212 AGAAATGCGAAATGCGCTATTGCTTATCCAGGTTCTTCGGGGTTTAGAAGGTTTGAAAAT 1271 Query 1374 GCTGCGAAAGAACCGGTTG---TT-T--CACCCGAGTTTCAATGTGGTTATAACAATAGT 1427 |||| |||||| ||||||| || | |||| |||||||||||||||||||| |||||| Sbjct 1272 GCTGGGAAAGAGCCGGTTGAAGTTGTTTCACCTGAGTTTCAATGTGGTTATAATAATAGT 1331 Query 1428 GTTGCTTCTTGTAAATCTTGTGGTAGTTTGGTTGATGTGAATGGTTCGATTCAGGTAGTT 1487 ||||||||||||||| |||||||||| |||||||||||||||||||||| || ||||||| Sbjct 1332 GTTGCTTCTTGTAAAGCTTGTGGTAGCTTGGTTGATGTGAATGGTTCGAGTCCGGTAGTT 1391 Query 1488 CAAGACACTGGAAACAACATGGCGTGTGTTTCTGAATCAACGCCTTTTCAACGGAGTAAA 1547 |||| ||||| || | | ||||||||||||||| ||||||||||||||||||||||||| Sbjct 1392 GAAGAAACTGGTAAGAGCGTGGCGTGTGTTTCTGCATCAACGCCTTTTCAACGGAGTAAA 1451 Query 1548 AGAAATGTGTTTTGGAGAAATGAAGATTCA-T-CTGTGTCT-GTT-TCTGGTAAAGACAG 1603 |||||||||||||||||||||||||| || | | | || || | || |||| | Sbjct 1452 AGAAATGTGTTTTGGAGAAATGAAGA--CAGTACAGA-TCAAGTGGTGAGG-AAAG-CTC 1506 Query 1604 TACTGATCAAATGGT-GA-A-GAAAGCTCTACACCGTGCT-CAATTTAA-GGATGAAATG 1658 ||| | | || | || | || || | || | | || | || |||||||||| Sbjct 1507 TAC--ACCG--TGCTCGATATGA---CT-T-CAATGGGAAGCA-TGGAAAGGATGAAATG 1556 Query 1659 TCGCTGCCGGGTTATAGAAACAGATCCGAATATCATAAGAAGGTGTTGCATAGAGAGGAA 1718 ||||| ||||||| |||||||||| || |||||||| |||||||||||||| ||||| Sbjct 1557 TCGCTACCGGGTTTTAGAAACAGA---GATTATCATAATAAGGTGTTGCATAGGGAGGAC 1613 Query 1719 AGGTTTCCTCCGGAAGCTCGATCTTTCGCCTTACCGAGTAAAAGAAGTTGTTCTTCACCT 1778 ||||||||||| |||||||||||||| |||||||| ||||||||| |||||||||||||| Sbjct 1614 AGGTTTCCTCCAGAAGCTCGATCTTTTGCCTTACCAAGTAAAAGAGGTTGTTCTTCACCT 1673 Query 1779 GCTAATGCTATCAACAGTAAAGAGAAGGACTTTATAGCTATGAATAGAGGTTCAACTAGT 1838 || |||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 1674 GCAAATGCTATCAACTGTAAAGAGAAGGACTTTATAGCTATGAATAGAGGTTCAACTAGT 1733 Query 1839 AGGAGTCATCACTCGAAGTCCCCGGTTAAATTTGAAAACTCTGATTTGAATCTGCAGAGA 1898 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1734 AGGAGTCATCACTCGAAGTCCCCGGTTAAATTTGAAAACTCTGATTTGAATCTGCAGAGA 1793 Query 1899 AAATCTCATACTAGAGTTGAGGAGTCTTGTAATAGATCAGG-ATTAAGTACACCTGGACG 1957 |||||||| |||||||||||||||||| ||| |||||| || |||||| ||||| ||||| Sbjct 1794 AAATCTCAGACTAGAGTTGAGGAGTCTAGTAGTAGATC-GGTATTAAGCACACCAGGACG 1852 Query 1958 GAAGAGGAGGCTAGCTTGTGAAAGTGGTCATGGACGAGGAAGTAG-TTCTATGAGTCCAG 2016 ||||||||||||||||||||| |||||||| |||||||||| ||| || || ||||||| Sbjct 1853 GAAGAGGAGGCTAGCTTGTGATAGTGGTCACGGACGAGGAATTAGCTT-TACCAGTCCAG 1911 Query 2017 TGTCAAGAAGATTGGATAGTGAATACTCTTGTGCTT---GTA--G----------TA--A 2059 ||||| |||||| ||| |||||| |||||| |||| ||| | || | Sbjct 1912 GGTCAAAAAGATTAGATGGTGAATGCTCTTGCGCTTTTAGTAATGGCCCCAGCGGTAGCA 1971 Query 2060 -TGAAACTGCATTTTCATCACTGAAACTTGGTTC-CTCTAATAGACATTATAGCCAATGC 2117 ||||||||||||| ||||||||||||||||||| || | | ||| || ||||||||||| Sbjct 1972 ATGAAACTGCATTTCCATCACTGAAACTTGGTTCACT-TCACAGAAATAATAGCCAATGC 2030 Query 2118 TGTAGAGAAACCAAAGAGAGAAGAGGAGTTCAACGCGTTCCCAGACCATCCTTTACGAAA 2177 ||||||| ||| |||||||||| |||||||||||| ||||| ||||| |||||||||||| Sbjct 2031 TGTAGAGGAACTAAAGAGAGAAAAGGAGTTCAACGTGTTCCAAGACCTTCCTTTACGAAA 2090 Query 2178 AGGCCACTGCTTGATGTAGGCACTCTCGGGTTGATTCAGCAAAAGTTGAAAGAATTGGCT 2237 ||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 2091 AGGCCACCGCTTGATGTAGGTACTCTCGGGTTGATTCAGCAAAAGTTGAAAGAATTGGCT 2150 Query 2238 TCTCAAGAAGAAGATGAGGCCAATGGAGAAAGTGGTTTTCCCAATAAACCAGCTTCTTTG 2297 ||||| ||||||||||||||||| |||||||||| ||||||||||||| |||| |||||| Sbjct 2151 TCTCAGGAAGAAGATGAGGCCAAAGGAGAAAGTGTTTTTCCCAATAAATCAGCCTCTTTG 2210 Query 2298 ATTCTCCATGAATTGCTATCTTCTTTAGCTTTGCAGCAGCAGCCTTATGTTCGAGATATC 2357 ||||||||||||||||||||||||||||||||| |||||| | |||| |||||||||| Sbjct 2211 ATTCTCCATGAATTGCTATCTTCTTTAGCTTTGGAGCAGC-G--TTATAATCGAGATATC 2267 Query 2358 GATATGCCTTAT-C-G-----G---A--G-A--AAAGGCAAAACA-GAGTTTTGGAGTTC 2401 ||||||||||| | | | | | | |||||||||| | ||||| ||||| | Sbjct 2268 GATATGCCTTACGCAGAAACAGCTTATCGGAGGAAAGGCAAAA-ATGAGTTGTGGAGCCC 2326 Query 2402 CATTGGAAATGCAAACAGTGAGTACACTAGCCCGGGATCTGTACTCGATGCATCTTTCTC 2461 | |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 2327 CGTTGGAAATGCAAACAGTGAGTACACTAGCCCGGGTTCTGTACTCGATGCATCTTTCTC 2386 Query 2462 CAATGAGAGCTGCTTTTCGAACAGCTTCGACAATATCTCAGGACAAATGAGGCTACCTCT 2521 ||||||||| | ||||| || ||||| |||||| ||||||||||||||||||| ||||| Sbjct 2387 CAATGAGAGTTTTTTTTCAAATAGCTTTGACAATGTCTCAGGACAAATGAGGCTGCCTCT 2446 Query 2522 AGAGCCTATAGAACCAGATTGGGACATTCTTGAAGATTATGCGACTTCATTCAAGAATTC 2581 ||||||||||||||| || ||| |||| || ||||||| ||||||||||||||| |||| Sbjct 2447 AGAGCCTATAGAACCCGACTGGAACATCCTCGAAGATTCCGCGACTTCATTCAAGCATTC 2506 Query 2582 AACAAGTGATGGTAATTATCAGGCGATCGC 2611 |||||||| ||||||||||||||||||||| Sbjct 2507 AACAAGTGGTGGTAATTATCAGGCGATCGC 2536 Score = 318 bits (172), Expect = 1e-85 Identities = 307/364 (84%), Gaps = 41/364 (11%) Strand=Plus/Plus Query 28 GTCTACTTGTATCAGCTACTTAACCTTTTGTGCGCATGC-T-TCTCTTTCTTCTGTTAAC 85 ||||||||||||||||||||||||||||||||||||||| | ||||||||||||| |||| Sbjct 1 GTCTACTTGTATCAGCTACTTAACCTTTTGTGCGCATGCTTCTCTCTTTCTTCTG-TAAC 59 Query 86 AATCTCTCTCGAGCCCCTTTCACCGTCAGTGACAACAGAGAGAATCACAGTAATAATTTT 145 |||||||||||||| ||||||||||||||||||||| |||| || || Sbjct 60 AATCTCTCTCGAGCTCCTTTCACCGTCAGTGACAAC--AGAG------AG----AA---- 103 Query 146 TACACAAAAAAGATTTCTCTTCTTCTCTTATCATCTCTCTTTCAATCACTTCTCGTCACT 205 | ||| | | | | || ||| | ||||||||||||||||||||||||||||||| Sbjct 104 T-CAC--AGTA-A--T-AATT-TTCAC--ATCATCTCTCTTTCAATCACTTCTCGTCACT 153 Query 206 ATCGTTTTGCTTTTGTCTCCTTTCACTTTTTTAAACTCCCAATTGCGAATATT-ACCCGT 264 ||||||||||||||||||||||||||||||| |||||| |||||||||||||| |||||| Sbjct 154 ATCGTTTTGCTTTTGTCTCCTTTCACTTTTT-AAACTCTCAATTGCGAATATTTACCCGT 212 Query 265 TGAGTTCTCATTTCGTGACActtcaactttttccattcttcttaaaaagctctgtttctt 324 |||||||||| ||| |||||| | ||||||||||||||||| ||||||||||||||||| Sbjct 213 TGAGTTCTCAGTTCTTGACACATAAACTTTTTCCATTCTTCCAAAAAAGCTCTGTTTCTT 272 Query 325 tctttctttcttcttcCACTGTTGTGTACCATTGTCGTTTTCTTGATTCTCCACCTGTCT 384 |||| ||| || ||||| || ||||||||||||||||||||| |||| |||||| Sbjct 273 TCTT-CTT-CT------ACTGTAGT--ACCATTGTCGTTTTCTTGATTTTCCAACTGTCT 322 Query 385 TCTT 388 |||| Sbjct 323 TCTT 326 Score = 274 bits (148), Expect = 3e-72 Identities = 243/287 (85%), Gaps = 14/287 (5%) Strand=Plus/Plus Query 2818 TCAATCTCCCTGGACTAACTGGAGGGTTCCTAGTAGATGCCATGATCGAACACTTGGAAG 2877 |||| |||||||||||||| || |||||||| |||||||| ||||||||||||||||||| Sbjct 2539 TCAACCTCCCTGGACTAACCGGCGGGTTCCTCGTAGATGCTATGATCGAACACTTGGAAG 2598 Query 2878 AAAC-AAACATTTCCTGCGGATTGTTAAAGCCATTGACTGCTAAACAAGACGAGCTGATT 2936 ||| ||||||||||||||||||||||||| | || | |||||||| |||||| ||||| Sbjct 2599 -AACGAAACATTTCCTGCGGATTGTTAAAGTCTTTCAGTGCTAAACCTGACGAGTTGATT 2657 Query 2937 CGAGGTGTTATTGAAGAAGTTCCAAAGTGGGCTCGGGTTAATATGGATGAGGTTATCGGT 2996 ||||||||| |||||||||||||||||||| ||||| |||| |||||||||||||||||| Sbjct 2658 CGAGGTGTTCTTGAAGAAGTTCCAAAGTGGACTCGGATTAACATGGATGAGGTTATCGGT 2717 Query 2997 ATCGAAATGGA----T--CTTGAAAC-GCA--TTTG-T-TT-GGAGTTGGTTCAGAGATT 3044 ||||||||||| | ||||| | | | ||| | || ||| | || ||||||||| Sbjct 2718 ATCGAAATGGAGAAATGGCTTGATCCTGAAACTTTTCTATTTGGAATAGGATCAGAGATT 2777 Query 3045 GCTTATGAGATTCTTCGGTGTTTAATCGGAGAGTTAGCAACCGATCT 3091 || |||||||| ||||||||||| | || |||||| |||||||||| Sbjct 2778 GCATATGAGATCCTTCGGTGTTTGGTTGGCGAGTTAACAACCGATCT 2824 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 117127503375 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5