BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G67050.1
Length=1162
Score E
Sequences producing significant alignments: (Bits) Value
Ahg475800 jgi|Araly1|475800|fgenesh2_kg.2__930__AT1G67050.1 1639 0.0
> Ahg475800 jgi|Araly1|475800|fgenesh2_kg.2__930__AT1G67050.1
Length=1144
Score = 1639 bits (887), Expect = 0.0
Identities = 1055/1128 (94%), Gaps = 44/1128 (4%)
Strand=Plus/Plus
Query 6 tctctctttctctcttcttcgaaattct--tcctcctctttttctGCAGAAACT--ATCC 61
|||||||||||||||||||||||||||| | ||||||||||||| |||||||| |
Sbjct 1 TCTCTCTTTCTCTCTTCTTCGAAATTCTCCTTCTCCTCTTTTTCTCCAGAAACTAAAAAA 60
Query 62 AAAAATCTCTTCGTTTTCACAATTTCTCA--T--TAT-Ta-aaaaaaaaa-CTTT-AAAT 113
||||||||||||||||||| || |||||| | ||| || ||||||||| |||| ||||
Sbjct 61 AAAAATCTCTTCGTTTTCATAAATTCTCATTTACTATATATAAAAAAAAACCTTTCAAAT 120
Query 114 TCTTCTTCTTCAAGAAAAAATGGCGGTGGATCTTTTATCGGAAAATTCTAATATGAGTCC 173
|| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 TCGTCTTCTTCAAG--AAAATGGCGGTGGATCTTTTATCGGAAAATTCTAATATGAGTCC 178
Query 174 AAGAATCTCATTTTCACGTGACTTTTGTCAATCAGACGCAATACCAATCGAGAAACGTCC 233
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 179 AAGAATCTCATTTTCGCGTGACTTTTGTCAATCAGACGCAATACCAATCGAGAAACGTCC 238
Query 234 CTTAAGATCATCAAACTCGAAACCATCAAGCCTCAATTCAAGCATAGATTTCGATTTCTG 293
||||||||||||||| || |||||||||||||||||||||||||| ||||||||||||||
Sbjct 239 CTTAAGATCATCAAATTCTAAACCATCAAGCCTCAATTCAAGCATTGATTTCGATTTCTG 298
Query 294 CATTCCCGGCGGCGTAAATTCCGGCGAAAGCTTCGATCAAGGTTCTTGGTCCGCCGATGA 353
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 299 CATTCCCGGCGGCGTAAATTCCGGCGAAAGCTTCGACCAAGGTTCTTGGTCCGCCGATGA 358
Query 354 ACTCTTCTCTAACGGcaaaatcttaccaacggaaatcaagaaaaaaccagaaccgggtaa 413
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 359 ACTCTTCTCTAACGGCAAAATCTTACCAACGGAAATCAAGAAAAAACCAGAACCGGGAAA 418
Query 414 aaaagaa-cc--a--g--a-a-ccaaaaccggttaa-atctaaaccGGATTCAAGAAAAC 463
||||||| || | | | | ||||||||||||| | |||||||||||||||||||||
Sbjct 419 AAAAGAACCCGAATCGAAAGATACAAAACCGGTTAAGA-CTAAACCGGATTCAAGAAAAC 477
Query 464 AGAGGAAACAACCAAACGAAGAACAACAAGAAGACGACGTGATAATCACGACGGAGGAGA 523
||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 478 AGAGGAAAC-A--AAACGAAGAACAACAAGAAGACGACGTGATAATCACGACGGAGGAGA 534
Query 524 AAACCAATACGAAGTCGTTTTGGGGGTTTAAGAGAAGCAGTAGTTTAAACTGTGGAAGTA 583
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 535 AAACCAATACGAAGTCGTTTTGGGGGTTTAAGAGAAGCAGTAGTTTAAACTGTGGAAGTA 594
Query 584 CTTATGGACGGAGTTTATGTCCGTTACCATTACTAAACCGGAGTAATTCAACCGGTTCAA 643
||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 595 CTTATGGTCGGAGTTTATGTCCGTTACCGTTACTAAACCGGAGTAATTCAACCGGTTCAA 654
Query 644 CGTCGAGTAAACAGAAACAGAGCAGCTCAAGGAAACATAACGAGCATGTTAAGTTACAAC 703
||||||||||||| ||||||||||||||||||||||| ||||| ||||| ||||||||||
Sbjct 655 CGTCGAGTAAACAAAAACAGAGCAGCTCAAGGAAACACAACGAACATGTGAAGTTACAAC 714
Query 704 AATCTTCATCGTTGtcttcttcttcttctgcttcgtcttcttTGAGTAATAATGGTTTTT 763
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 715 AATCTTCATCGTTGTCTTCTTCTTCCTCTGCTTCGTCTTCTTTGAGTAATAATGGTTTTT 774
Query 764 CGAAACCACCATTGAAGAAAAGCTATGGAGGTTATAGTTATGGTAGCCATGGTGGTGGTG 823
||||||| ||||||||||||||||||||||| |||||||||||||| ||||| |||||||
Sbjct 775 CGAAACCGCCATTGAAGAAAAGCTATGGAGGGTATAGTTATGGTAGTCATGGAGGTGGTG 834
Query 824 GGATTAGAGTGAGTCCGGTTATAAACGTTGTTCCTTCTGGGAATTTGTTTGGTTTTGGTT 883
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 835 GGATTAGAGTGAGTCCGGTTATAAACGTTGTTCCTTCAGGGAATTTGTTTGGTTTTGGTT 894
Query 884 CAATGTTTTCTGGTAATGGAAGAGACAAGAACAAGAAAAGATaaaaaaaaTGTAAGAATA 943
| ||||||||||||||||||||||||||||||||||| |||||||| ||||||||||
Sbjct 895 CCATGTTTTCTGGTAATGGAAGAGACAAGAACAAGAAGAGATAAAA----TGTAAGAATA 950
Query 944 GATATGTTT-CTGGTTTTACTGTTTTATTCTTCTGATTTGTTCTTCTTCTTGTTCTCTGA 1002
||||||||| |||||||||||||||||||||||| | ||||||||||||||||||
Sbjct 951 GATATGTTTTCTGGTTTTACTGTTTTATTCTTCT--T-----CTTCTTCTTGTTCTCTGA 1003
Query 1003 A-CTCTGAAGATTTTCTGACAGTGTGTTTTGTGGATCCCATGCCAGTATTATT-TTTT-- 1058
| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1004 AACTCTGAAGATTTTCTGACAGTGTGTTTTGTGGATCCCATGCCAGTATTATTATTTTTT 1063
Query 1059 AGACTATTGTGGTGTAATTGTGTTTTGTTTGATTTGTTAGTTTGTGTT 1106
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1064 AGACTATTGTGGTGTAATTGTGTTTTGTTTGATTTGTTAGTTTGTGTT 1111
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 43345756629
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5