BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G67060.1
Length=1084
Score E
Sequences producing significant alignments: (Bits) Value
Ahg475801 jgi|Araly1|475801|fgenesh2_kg.2__931__AT1G67060.1 1219 0.0
> Ahg475801 jgi|Araly1|475801|fgenesh2_kg.2__931__AT1G67060.1
Length=887
Score = 1219 bits (660), Expect = 0.0
Identities = 793/853 (93%), Gaps = 26/853 (3%)
Strand=Plus/Plus
Query 78 agaaagaaagaaagaTTCAATCTTTATTAGCCGGAGATG--G-ATTCGCCAAACTGGGAA 134
||| ||||||||||||||||||||||||||||||||||| | |||| || |||||||||
Sbjct 42 AGAGAGAAAGAAAGATTCAATCTTTATTAGCCGGAGATGATGAATTCACCGAACTGGGAA 101
Query 135 CTCCGTGGTTGTTGTAACCGGAATCAAAATACTTTCCTCATCACCATCGGAGTCTTCACC 194
||||| |||||||||||||||||||||||||||||||| |||||||||||| ||||||||
Sbjct 102 CTCCGGGGTTGTTGTAACCGGAATCAAAATACTTTCCTTATCACCATCGGAATCTTCACC 161
Query 195 GTAGTTATCCTTCTGCTATGGAGGACATTTCTATTGACTCCATTTAAACTCATTACGGTG 254
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 162 GTCGTTATCCTTCTGCTATGGAGGACATTTCTATTGACTCCATTTAAACTCATTACGGTG 221
Query 255 TTTTTGCACGAAGCTAGTCATGCCGTTGCTTGCAAGCTTACATGTGGAGATGTAGAGGGG 314
||||| || ||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 222 TTTTTACATGAAGCCAGTCATGCCGTTGCTTGCAAGCTTACATGTGGAGATGTAGAGGGG 281
Query 315 ATGGAGGTGAATGCAAATGAAGGGGGTTCGACCACAACACGTGGTGGCATTTATTGGTTG 374
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||
Sbjct 282 ATGGAGGTGAATGCAAATGAAGGGGGTTCGACAACAACACGTGGTGGCATTTATTGGCTG 341
Query 375 ATCTTACCTGCTGGCTATCTTGGCTCATCATTTTGGGGAATGGCATTGATTCTTGCATCT 434
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 342 ATCTTACCTGCTGGCTATCTTGGCTCATCATTTTGGGGAATGGCATTGATTCTTGCATCT 401
Query 435 ACCAATCTGCTTACAGCAAGAATAGCTGCTGCTGGTCTTGGTCTTGCTTTATTCATCGTT 494
||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 402 ACCAATCTGCTGACAGCAAGAATAGCTGCTGCTGGTCTGGGTCTTGCTTTATTCATCGT- 460
Query 495 CTC-TTCATTGCCAAAAACTGGACGCTTCGAGGGCTTTGTATAGGTTTCATAGTTTTCCT 553
|| |||||||||||||| |||||||||||||| ||||||||||||||||||||||||||
Sbjct 461 CTTATTCATTGCCAAAAATTGGACGCTTCGAGGTCTTTGTATAGGTTTCATAGTTTTCCT 520
Query 554 CGCTGTCATATGGGTTCTACAAGAGTTAACTACAGTCAAAATTCTCCGTTATGTCATTCT 613
|||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 521 CGCTATCATCTGGGTTCTACAAGAGTTAACTACAGTCAAAATTCTCCGTTATGTCATTCT 580
Query 614 GTTTATTGGTGTGATGAATAGCTTATTCTCAGTTTACGATATCTATGATGATTTGATATC 673
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 581 GTTCATTGGTGTGATGAATAGCTTATTCTCAGTTTACGATATCTATGATGATTTGATATC 640
Query 674 TCGGAGGGTCCATTCGAGCGATGCTGAGAAGTTCGCAGAGATCTGTCCTTGCTGTACCGG 733
||||||||||||||| ||||| ||||||||||| ||||||||||||||||||||||||||
Sbjct 641 TCGGAGGGTCCATTCAAGCGACGCTGAGAAGTTTGCAGAGATCTGTCCTTGCTGTACCGG 700
Query 734 TTGTGGCTGGGGTGTCATCTGGGGAATGATATCATTTGCGTTTCTTTGTGCATCGCTCTA 793
|||||||||||||||||| ||||||||||| ||||||||||||||||| || ||||||||
Sbjct 701 TTGTGGCTGGGGTGTCATTTGGGGAATGATTTCATTTGCGTTTCTTTGCGCGTCGCTCTA 760
Query 794 TCTCGGGCTAGTGATCCTATCATAAGAGGGTATTCTT-T--G--TTA--------CTC-- 838
|||||| |||||||||||||||||| ||||||||||| | | || |||
Sbjct 761 TCTCGGCCTAGTGATCCTATCATAAAAGGGTATTCTTGTATGAATTTGTTGGTGTCTCTC 820
Query 839 AGGTTCAGATTCTTCCCAGTGAAATGCATGCAAAGACAAATAGTTTGACAAAAAGATTGA 898
||||||| |||||||||||||||||||| | | ||||| |||||||| |||| | ||||
Sbjct 821 AGGTTCAAATTCTTCCCAGTGAAATGCA-G-A--GACAA-TAGTTTGATAAAA-GCTTGA 874
Query 899 TTCTTTAGATCCC 911
||||||| |||||
Sbjct 875 TTCTTTAAATCCC 887
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 40372169103
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5