BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G67070.1
Length=1750
Score E
Sequences producing significant alignments: (Bits) Value
Ahg908250 jgi|Araly1|908250|Al_scaffold_0002_1331 1969 0.0
> Ahg908250 jgi|Araly1|908250|Al_scaffold_0002_1331
Length=1329
Score = 1969 bits (1066), Expect = 0.0
Identities = 1239/1324 (94%), Gaps = 5/1324 (0%)
Strand=Plus/Plus
Query 190 ATGGGAGCAGACGCAATCCAAACGAATGGTCACGATCAAGCCAAGTTAACCGGCGGTGAA 249
|||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||
Sbjct 1 ATGGGAGCAGACGCAATCCAAACGAACGGTCACGATCAAACCAAGTTAACCGGCGGTGAA 60
Query 250 GAGATCCAACGGCTGAGATGTTTTGTGAAGAACTACGAATGGGGCAAACTCGGACCGGAG 309
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 61 GAGATCCAACGGCTGAGATGTTTCGTGAAGAACTACGAATGGGGCAAACTCGGACCGGAC 120
Query 310 TCATTGGTGGCGAGACTCCAAGAGGCTAATACAGGACAACGAGTCGATTCGGAGATTCCT 369
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 121 TCATTGGTGGCGAGACTCCAAGAGGCTAATACAGGACAACGAGTCGACCCGGAGATTCCT 180
Query 370 TACGCTGAGTTTTGGATGGGTACTCATGAGTCTGGACCGAGTCATGTTGAATTCGGGTC- 428
|||| |||||||||||||| ||||||||||| |||||||||||||||||||| |||||
Sbjct 181 CACGCCGAGTTTTGGATGGGGACTCATGAGTCAGGACCGAGTCATGTTGAATTTGGGTCG 240
Query 429 --GGGTCATGGTGTGTCTGATAAATGTATGGTTACATTGAAATCGTGGGTTTTGGATAAT 486
||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 241 TTGGGTCATGGTGGGTCTGATAAGTGTATGGTTACATTGAAATCGTGGGTTTTGGATAAT 300
Query 487 CCGAATTTACTCGGGTCTAAAGTCGTGGACAAATGGGGTTGTGATCTTCCTTTCCTTTTC 546
||| |||||||||||||||||||||||||||| |||||||||||||||||||| || |||
Sbjct 301 CCGGATTTACTCGGGTCTAAAGTCGTGGACAAGTGGGGTTGTGATCTTCCTTTTCTCTTC 360
Query 547 AAGGTTTTGTCAGTAACGAAAGCATTGTCGATTCAAGCACATCCAAATAAGGCCTTAGCA 606
||||| |||||||| || ||||||||||||||||||||||||||||||||||| ||||||
Sbjct 361 AAGGTGTTGTCAGTGACAAAAGCATTGTCGATTCAAGCACATCCAAATAAGGCTTTAGCA 420
Query 607 GAGAAATTGCATAGAGAAGATCCTCTTCTTTACAGAGACAATAACCACAAGCCTGAGATT 666
||||||||||||||||||||||||||||| || ||||| |||||||||||||||||||||
Sbjct 421 GAGAAATTGCATAGAGAAGATCCTCTTCTCTATAGAGATAATAACCACAAGCCTGAGATT 480
Query 667 GCTCTTGCTGTTACTCCTTTTCAAGCCCTTTGTGGTTTCGTAACTCTTAAGGAACTGAAG 726
||||||||||||||||||||| |||||||||||||||||||| |||| ||||||||||||
Sbjct 481 GCTCTTGCTGTTACTCCTTTTGAAGCCCTTTGTGGTTTCGTACCTCTCAAGGAACTGAAG 540
Query 727 GAGGTTATCACTAATGTACCAGAGATCACGGAGCTTGTAGGAAGCAAAGCTGCAGATCAA 786
||||||||||| ||||||||||||||||| |||||||| |||||||||||||||||||||
Sbjct 541 GAGGTTATCACCAATGTACCAGAGATCACAGAGCTTGTGGGAAGCAAAGCTGCAGATCAA 600
Query 787 ATCTTCAACGTCCACGAACACGATGAAGACGAGAGAATCAAATCCGTTGTTCGATTGATC 846
||||||||||||||||||||||||||||| |||||| ||||||||||||| || ||||||
Sbjct 601 ATCTTCAACGTCCACGAACACGATGAAGATGAGAGAGTCAAATCCGTTGTCCGGTTGATC 660
Query 847 TTCACACAGTTGATGTCTGCAAGTAACAATGAGACGAAGCAAGTGGTTTCTCGGATGAAG 906
||||| ||||||||||| ||||| ||||||||||||||||||| ||| ||||||||||||
Sbjct 661 TTCACGCAGTTGATGTCCGCAAGCAACAATGAGACGAAGCAAGGGGTATCTCGGATGAAG 720
Query 907 AATCGTCTGCTCTTAGAGACCAAACACCGTGAACTGTCGGAGAAAGAGAAGTTGGTTTTG 966
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 721 AATCGTCTGCTCTTAGAGACCAAACACCGTGAACTGTCGGAGAAAGAGAAGTTGGTTTTG 780
Query 967 GAACTGGAGAAACAGTACACTGGTGACATAGGTGTCATCTCAGCCTTCTTCTTTAACTAT 1026
|||||||||||||||||| | |||||||||||||| |||||||||||||||||||||||
Sbjct 781 GAACTGGAGAAACAGTACTCAGGTGACATAGGTGTGATCTCAGCCTTCTTCTTTAACTAC 840
Query 1027 GTCAAGCTTAATCCTGGAGAGGCTTTGTATTTGGACGCTAACGAGCCACACGCATATATA 1086
|||||||||||||||||||||||||||||||||||||| ||||||||||| || || ||
Sbjct 841 GTCAAGCTTAATCCTGGAGAGGCTTTGTATTTGGACGCAAACGAGCCACATGCTTACATC 900
Query 1087 TCCGGTGATTGTGTTGAGTGTATGGCGGCTTCAGACAACGTAGTTAGAGCTGGTCTTACT 1146
||||| || ||| | |||||||||||||||||||||||||| ||||||||||| ||||||
Sbjct 901 TCCGGCGACTGTATCGAGTGTATGGCGGCTTCAGACAACGTTGTTAGAGCTGGCCTTACT 960
Query 1147 CCTAAACATCGCGATGTTCAAACGCTTTGCTCTATGCTTACCTACAAATTGGGTTACCCG 1206
|||||||| |||||||||||||| ||||||||||||||||||||||||||||| ||||||
Sbjct 961 CCTAAACACCGCGATGTTCAAACCCTTTGCTCTATGCTTACCTACAAATTGGGCTACCCG 1020
Query 1207 GAGATTCTGAAAGGATTTCCTCTGACTCCTTACGTTACAAGGTATCTTCCTCCATTTGAT 1266
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1021 GAGATTCTGAAAGGATTTCCTCTAACTCCTTACGTTACAAGGTATCTTCCTCCATTTGAT 1080
Query 1267 GAGTTTGAAGTGGATCATTGTGATCTTCCTAGAGGAAAATCGACGGTTTTTCCGGCAGTA 1326
||||| |||||||| ||||| ||||| ||| | ||||| |||||||||||||||||||||
Sbjct 1081 GAGTTCGAAGTGGACCATTGCGATCTACCTGGTGGAAATTCGACGGTTTTTCCGGCAGTA 1140
Query 1327 CCAGGTCCTTCGGTTTATTTGGTTATTGAAGGAAAAGGGCAATTGCGAACCGGTTCATCT 1386
|| || |||||||||||| ||||||||||||| ||||| |||||| |||||||||||||
Sbjct 1141 CCGGGGCCTTCGGTTTATCTGGTTATTGAAGGTCAAGGGAAATTGCAAACCGGTTCATCT 1200
Query 1387 AAAGTT-TTGGTAAACCGAGGAGATGTTTTGTTTGTTCCGGCTGATATTGAGATTCACGT 1445
|| || ||||| |||||||||||||||||||||||||||||| ||| ||| |||||||
Sbjct 1201 CAA-TTGTTGGTGAACCGAGGAGATGTTTTGTTTGTTCCGGCTCATAACGAGGTTCACGT 1259
Query 1446 AACTGGAGAAAGTGATGTGATGAAGCTTTACAGAGCTGGAGTCAGCAGCAGATTCTTCCA 1505
||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1260 AACCGGAGAAAGTGATATGATGAAGCTTTACAGAGCTGGAGTCAGCAGCAGATTCTTCCA 1319
Query 1506 AACA 1509
||||
Sbjct 1320 AACA 1323
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 65667582380
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5