BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G67080.1
Length=1022
Score E
Sequences producing significant alignments: (Bits) Value
Ahg925945 jgi|Araly1|925945|scaffold_201506.1 1011 0.0
> Ahg925945 jgi|Araly1|925945|scaffold_201506.1
Length=718
Score = 1011 bits (547), Expect = 0.0
Identities = 659/711 (93%), Gaps = 15/711 (2%)
Strand=Plus/Plus
Query 165 AGATTTGAATCAGAGATGGGTTTTTCTTCTTTCATTTCTCAGCCTTTGTCTTCATCTCTC 224
|||||| |||||||||||| ||||||||||||||||||||| ||||||||||||||||||
Sbjct 9 AGATTTAAATCAGAGATGGCTTTTTCTTCTTTCATTTCTCAACCTTTGTCTTCATCTCTC 68
Query 225 TCGGTGATGAAACGCAACGTTTCTGCTAAAAGATCGGAACTTTGTCTTGATTCTTCAAAG 284
|| |||||||||||||| |||| |||||||||||||||||||||||||| |||||||||
Sbjct 69 ACGATGATGAAACGCAACATTTCGGCTAAAAGATCGGAACTTTGTCTTGACTCTTCAAAG 128
Query 285 ATTAGATTAGATCATCGTTGGAGCTTCATTGGAGGATCAAGAATCTCTGTTCAGTCCAA- 343
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 129 ATTAGATTAGATCATCGTTGGAGCTTCATTGGAGGATCAGGAATCTCTGTTCAGTCCAAT 188
Query 344 --TTC-TT--A--C--AC-C-GTAGTTCACAAGAAATTCTCCGGTGTACGAGCTTCATGG 392
||| || | | || | ||||||| |||||||||||||||||||||||||||||||
Sbjct 189 GTTTCGTTGAATTCTAACTCTGTAGTTCGCAAGAAATTCTCCGGTGTACGAGCTTCATGG 248
Query 393 TTAACTACTACTCAGATTGCAAGCAGTGTATTTGCGGTTGGAACTACCGCGGTT-TTACC 451
||||||||| ||||||||||||||||||||||||||||||||||||| |||||| || ||
Sbjct 249 TTAACTACTTCTCAGATTGCAAGCAGTGTATTTGCGGTTGGAACTACTGCGGTTCTT-CC 307
Query 452 CTTCTATACTCTAATGGTTGTAGCACCAAAAGCTGAAATTACCAAGAAGTGTATGGAGAG 511
||| |||||||| ||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 308 CTTTTATACTCTCATGGTTGTAGCTCCAAAAGCTGAAATTACCAAGAAGTGTATGGAGAG 367
Query 512 TAGCGTACCGTATATCATCTTAGGCGTATTATATGTGTATTTGTTATACATTTCTTGGAC 571
|||| ||||||||||| |||||||||||||||| | ||||||||||||| ||||||||||
Sbjct 368 TAGCATACCGTATATCGTCTTAGGCGTATTATACGCGTATTTGTTATACCTTTCTTGGAC 427
Query 572 ACCCGAGACGCTCAAATACATGTTTTCTAGTAAATACATGTTGCCAGAGTTGTCTGGAAT 631
||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||
Sbjct 428 ACCCGAGACGCTCAAATACATGTTTTCTAGTAAATACATGTTGCCAGAGCTGTCCGGAAT 487
Query 632 AGCTAAAATGTTCTCAAGTGAAATGACTCTTGCTTCTGCTTGGATTCATCTTCTTGTTGT 691
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 488 AGCAAAAATGTTCTCAAGTGAAATGACTCTTGCTTCTGCTTGGATTCATCTTCTTGTGGT 547
Query 692 AGATCTTTTCGCTGCACGGCAAGTTTATAATGATGGGTTAGAGAACCAGATCGAGACGAG 751
||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 548 AGATCTTTTTGCTGCACGGCAAGTTTATAATGATGGGTTAGAGAATCAGATCGAGACGAG 607
Query 752 GCATTCGGTTTCACTTTGCCTTCTCTTCTGTCCGGTTGGAATCGTTTCGCATTTCGTAAC 811
|||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 608 GCATTCGGTTTCGCTCTGCCTTCTCTTCTGTCCGGTTGGAATCGTTTCGCATTTCGTAAC 667
Query 812 CAAAGCTATAATCAACAACCAGTACAAATAAGCT-GATGATCTTGGTTTCT 861
||||||| ||||||||| |||| ||| ||| | | |||||||||| |||
Sbjct 668 CAAAGCTTTAATCAACACCCAGGGCAAGTAAAATTGGTGATCTTGGTCTCT 718
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 38008548249
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5